Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004988.1

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

49140 .. 51424

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004988.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgacgattgcaagatatgtaagtgacgtttggaaggtcggtttgcagtttgagcatggggttgagagagacgagatcaaaagaacgattagaaaactgatggtggagaaagaagggaatgagatcagggacaggagctcgaagctaatggagaggagcttgaagctaatagagaaggcaagtcattccttgaaagaaggtggctcctcaaaccaatccttggatgccttgtcaacagtggccggaacacctactggtcgaagaaacgggtttgccgcacccaaaactcttcgattctttttcatcgacatgaatcgaggtaaactaagagaaggggatgaggcggcgtggaatggtagtccaaaatcgaccagtgtaatggtttggggtggccatacggaaaagaacccgttggaccccaggttcgggttgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

9.79

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AciI	CCGC	2 cut(s)	276, 344
AcoI	YGGCCR	2 cut(s)	240, 391
AfiI	CCNNNNNNNGG	3 cut(s)	220, 425, 426
AgsI	TTSAA	2 cut(s)	163, 193
AjnI	CCWGG	1 cut(s)	419
AloI	GAACNNNNNNTCC	1 cut(s)	407
AluBI	AGCT	4 cut(s)	138, 145, 159, 166
AluI	AGCT	4 cut(s)	138, 145, 159, 166
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	240, 391
ArsI	GACNNNNNNTTYG	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	276, 345
BlsI	GCNGC	2 cut(s)	277, 346
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	205, 417
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	219, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 425, 426
Bse1I	ACTGG	2 cut(s)	259, 372
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	219, 419
BseGI	GGATG	2 cut(s)	229, 343
BseLI	CCNNNNNNNGG	3 cut(s)	220, 425, 426
BseNI	ACTGG	2 cut(s)	259, 372
BseRI	GAGGAG	2 cut(s)	169, 196
BshFI	GGCC	2 cut(s)	242, 393
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	220, 425, 426
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	242, 393
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	75, 123
BspACI	CCGC	2 cut(s)	276, 344
BspANI	GGCC	2 cut(s)	242, 393
BspLI	GGNNCC	2 cut(s)	205, 417
BsrI	ACTGG	2 cut(s)	259, 372
BssECI	CCNNGG	2 cut(s)	219, 419
BssMI	GATC	2 cut(s)	75, 123
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	229, 343
BstKTI	GATC	2 cut(s)	78, 126
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	75, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	242, 393
BtsCI	GGATG	2 cut(s)	229, 343
BtsIMutI	CAGTG	2 cut(s)	243, 379
Cfr13I	GGNCC	1 cut(s)	415
CviAII	CATG	2 cut(s)	56, 310
CviJI	RGCY	7 cut(s)	138, 145, 159, 166, 204, 242, 393
CviKI_1	RGCY	7 cut(s)	138, 145, 159, 166, 204, 242, 393
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	2 cut(s)	77, 125
DpnII	GATC	2 cut(s)	75, 123
EaeI	YGGCCR	2 cut(s)	240, 391
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	59, 313
FaiI	YATR	4 cut(s)	18, 57, 311, 396
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	55, 309
Fnu4HI	GCNGC	2 cut(s)	276, 345
FokI	GGATG	2 cut(s)	236, 350
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	276, 345
GluI	GCNGC	2 cut(s)	276, 345
HaeIII	GGCC	2 cut(s)	242, 393
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	2 cut(s)	59, 313
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	294, 313
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	2 cut(s)	234, 323
Hpy8I	GTNNAC	2 cut(s)	234, 323
HpyAV	CCTTC	5 cut(s)	28, 107, 169, 191, 326
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	11, 46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	59, 313
Kzo9I	GATC	2 cut(s)	75, 123
LmnI	GCTCC	3 cut(s)	135, 156, 209
LpnPI	CCDG	7 cut(s)	112, 118, 240, 256, 385, 406, 433
LweI	GCATC	1 cut(s)	214
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	77, 125
MboI	GATC	2 cut(s)	75, 123
MboII	GAAGA	2 cut(s)	273, 281
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	147, 217, 311, 334
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	75, 123
NlaIII	CATG	2 cut(s)	59, 313
NlaIV	GGNNCC	2 cut(s)	205, 417
NmuCI	GTSAC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	294, 313
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	277, 346
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	205, 417
PspPI	GGNCC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	140
SatI	GCNGC	2 cut(s)	276, 345
Sau3AI	GATC	2 cut(s)	75, 123
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	308
SsiI	CCGC	2 cut(s)	276, 344
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	6 cut(s)	140, 259, 292, 306, 316, 368
TauI	GCSGC	2 cut(s)	278, 347
TfiI	GAWTC	2 cut(s)	294, 313
TscAI	CASTG	2 cut(s)	243, 379
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	292, 326
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	243, 379
Van91I	CCANNNNNTGG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.