Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

9241218 .. 9242441

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGCAAATTAAGAAAGGCCAGAGGTTGATACTCTTCCCATTACCGTTTCAAGGCCATATAAACCCTATGCTCGAGCTAGCTAACGTTCTATATTTCAGAGGCTTCTCCATAACCATCATCCACACCAACTTCAACTCTCTCAACCCTTCAACCTATCCTCACTTCACCTTCCATTCAATCCCTGATGGCCTATCTGAAACTGAGACCTCCACAAACAATCCCCTCCTCCTTCTTTCTTGTCTAAATGCGCACTGTTGTGATCCATTCCGAAACTGCCTGGCTAGCTTGTTATCTGATGATGGTTCACAGGAGCCTATTGCTTGCTTAATCACTGACCCTGTCTTTGACTTCACTCAATCTGTTGCTAAGAGCCTTAAGCTTCCAAGGATGCTGCTAAGAACAGGAGGTGCCTCATCAACTATTGTTTATGCCGCATTTCCACTTCTGTGGGAAAAGGGTTACCTCCCAAAACAAGAATCTCAACTGGAAGAGCCAGTAGTAGAGCTGTCACCACTCAAAGTGAAAGACCTTCCAATGATGAACTCTTGTGACCCACAGGGATATTATCAATTTATAACCGAAATGTGCCCATTTCACAAATGGTTCCCAACCTCCTATTCAAATAGTTTATTATCAGAGGATGAAAGTTGCATTTCATGGCTAAACACTCAAGCACCAAAATCTGTTGTCTATGTTAGCTTTGGGAGCATTGCTGCAATAAATGAAGATCAATTTTTGGAAATAGCTTGGGGACTAGCCAACACCAATCAGCCCTTCTTGTGGGTGGTTCGACCTGGATTAATCCAAGGCTCTGAATGGCTCGAAAAATTACCTCAAGGGTACCTGGAGGCTTTAAATGAGAAGGGTCACACTGTGAAATGGGCACCACAGAAAAAGGTGCTGGCTCATCCAGCTGTGGGACTGTTCTGGACTCACAATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

316

Amino Acids

35.41

Weight (kDa)

5.58

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	221 - 315	2.1e-11	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
Acc16I	TGCGCA	1 cut(s)	252
Acc65I	GGTACC	1 cut(s)	843
AccB1I	GGYRCC	3 cut(s)	410, 843, 886
AciI	CCGC	1 cut(s)	435
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	877
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	3 cut(s)	53, 783, 920
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	53, 136, 153, 180, 624
AjnI	CCWGG	3 cut(s)	279, 796, 846
AjuI	GAANNNNNNNTTGG	4 cut(s)	604, 636, 761, 793
AleI	CACNNNNGTG	2 cut(s)	258, 448
AluBI	AGCT	8 cut(s)	79, 83, 288, 382, 508, 702, 749, 917
AluI	AGCT	8 cut(s)	79, 83, 288, 382, 508, 702, 749, 917
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	19, 55, 190
ApeKI	GCWGC	2 cut(s)	394, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AseI	ATTAAT	1 cut(s)	803
Asp718I	GGTACC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	160, 504
AsuNHI	GCTAGC	2 cut(s)	79, 284
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	2 cut(s)	593, 889
BanI	GGYRCC	3 cut(s)	410, 843, 886
BbvI	GCAGC	2 cut(s)	381, 703
BccI	CCATC	3 cut(s)	125, 182, 296
BciT130I	CCWGG	3 cut(s)	281, 798, 848
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	80, 285, 758
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	3 cut(s)	395, 435, 717
BlsI	GCNGC	3 cut(s)	396, 436, 718
Bme1390I	CCNGG	3 cut(s)	281, 798, 848
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	5 cut(s)	315, 412, 608, 845, 888
BmrFI	CCNGG	3 cut(s)	281, 798, 848
BmsI	GCATC	1 cut(s)	381
BmtI	GCTAGC	2 cut(s)	83, 288
BpmI	CTGGAG	1 cut(s)	869
BpuEI	CTTGAG	2 cut(s)	657, 822
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	386, 808
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 783, 920
Bse1I	ACTGG	2 cut(s)	492, 497
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	3 cut(s)	281, 798, 848
BseDI	CCNNGG	2 cut(s)	386, 808
BseGI	GGATG	4 cut(s)	120, 396, 649, 910
BseLI	CCNNNNNNNGG	3 cut(s)	53, 783, 920
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	492, 497
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	2 cut(s)	593, 889
BseXI	GCAGC	2 cut(s)	381, 703
BshFI	GGCC	3 cut(s)	21, 57, 192
BshNI	GGYRCC	3 cut(s)	410, 843, 886
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	768, 936
BslI	CCNNNNNNNGG	3 cut(s)	53, 783, 920
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	768, 936
BsnI	GGCC	3 cut(s)	21, 57, 192
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	593, 889
Bsp143I	GATC	2 cut(s)	262, 730
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	3 cut(s)	21, 57, 192
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	5 cut(s)	315, 412, 608, 845, 888
BspOI	GCTAGC	2 cut(s)	83, 288
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	486
BspT107I	GGYRCC	3 cut(s)	410, 843, 886
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	492, 497
BssECI	CCNNGG	2 cut(s)	386, 808
BssMI	GATC	2 cut(s)	262, 730
BssT1I	CCWWGG	2 cut(s)	386, 808
Bst2UI	CCWGG	3 cut(s)	281, 798, 848
Bst4CI	ACNGT	4 cut(s)	48, 257, 877, 927
Bst6I	CTCTTC	2 cut(s)	41, 486
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	81, 286, 325, 906
BstDEI	CTNAG	3 cut(s)	204, 369, 398
BstEII	GGTNACC	1 cut(s)	461
BstF5I	GGATG	4 cut(s)	120, 396, 649, 910
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	265, 733
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	262, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 708, 914
BstNI	CCWGG	3 cut(s)	281, 798, 848
BstPI	GGTNACC	1 cut(s)	461
BstSCI	CCNGG	3 cut(s)	279, 796, 846
BstSLI	GKGCMC	2 cut(s)	593, 889
BstV1I	GCAGC	2 cut(s)	381, 703
BstXI	CCANNNNNNTGG	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	21, 57, 192
BtsCI	GGATG	4 cut(s)	120, 396, 649, 910
BtsIMutI	CAGTG	3 cut(s)	253, 333, 873
Cac8I	GCNNGC	4 cut(s)	81, 286, 325, 906
CfoI	GCGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	844
CviAII	CATG	1 cut(s)	660
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	3 cut(s)	204, 369, 398
DpnI	GATC	2 cut(s)	264, 732
DpnII	GATC	2 cut(s)	262, 730
DraI	TTTAAA	1 cut(s)	858
DraIII	CACNNNGTG	1 cut(s)	877
Eam1104I	CTCTTC	2 cut(s)	41, 486
EarI	CTCTTC	2 cut(s)	41, 486
Eco130I	CCWWGG	2 cut(s)	386, 808
Eco31I	GGTCTC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	461
EcoO65I	GGTNACC	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	279, 796, 846
EcoT14I	CCWWGG	2 cut(s)	386, 808
ErhI	CCWWGG	2 cut(s)	386, 808
FaeI	CATG	1 cut(s)	663
FaiI	YATR	9 cut(s)	60, 62, 71, 94, 113, 432, 578, 661, 696
FaqI	GGGAC	2 cut(s)	768, 936
FatI	CATG	1 cut(s)	659
Fnu4HI	GCNGC	3 cut(s)	395, 435, 717
FokI	GGATG	4 cut(s)	107, 403, 656, 897
Fsp4HI	GCNGC	3 cut(s)	395, 435, 717
FspAI	RTGCGCAY	1 cut(s)	252
FspBI	CTAG	3 cut(s)	80, 285, 758
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	395, 435, 717
GsuI	CTGGAG	1 cut(s)	869
HaeIII	GGCC	3 cut(s)	21, 57, 192
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	663
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	479, 934
HphI	GGTGA	2 cut(s)	160, 504
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	6 cut(s)	101, 199, 272, 298, 640, 817
Hpy188III	TCNNGA	1 cut(s)	931
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	6 cut(s)	159, 181, 242, 542, 787, 859
HpyCH4III	ACNGT	4 cut(s)	48, 257, 877, 927
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	654, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 708, 914
HpyF3I	CTNAG	3 cut(s)	204, 369, 398
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	663
HspAI	GCGC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	847
Kzo9I	GATC	2 cut(s)	262, 730
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	3 cut(s)	4, 313, 708
Lsp1109I	GCAGC	2 cut(s)	381, 703
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	3 cut(s)	80, 285, 758
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	461, 510, 551, 869
MalI	GATC	2 cut(s)	264, 732
MboI	GATC	2 cut(s)	262, 730
MboII	GAAGA	3 cut(s)	28, 503, 740
MhlI	GDGCHC	2 cut(s)	593, 889
MluCI	AATT	4 cut(s)	9, 572, 734, 830
MlyI	GAGTC	1 cut(s)	928
MseI	TTAA	5 cut(s)	12, 329, 378, 803, 857
MslI	CAYNNNNRTG	2 cut(s)	258, 448
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	3 cut(s)	281, 798, 848
MvaI	CCWGG	3 cut(s)	281, 798, 848
MwoI	GCNNNNNNNGC	3 cut(s)	285, 708, 914
NdeII	GATC	2 cut(s)	262, 730
NheI	GCTAGC	2 cut(s)	79, 284
NlaIII	CATG	1 cut(s)	663
NlaIV	GGNNCC	5 cut(s)	315, 412, 608, 845, 888
NmuCI	GTSAC	3 cut(s)	510, 551, 869
NsbI	TGCGCA	1 cut(s)	252
OliI	CACNNNNGTG	2 cut(s)	258, 448
PaeR7I	CTCGAG	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	396, 436, 718
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
PshBI	ATTAAT	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	578
Psp1406I	AACGTT	1 cut(s)	87
Psp6I	CCWGG	3 cut(s)	279, 796, 846
PspEI	GGTNACC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	279, 796, 846
PspN4I	GGNNCC	5 cut(s)	315, 412, 608, 845, 888
PspXI	VCTCGAGB	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
RseI	CAYNNNNRTG	2 cut(s)	258, 448
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	5 cut(s)	12, 329, 378, 803, 857
SatI	GCNGC	3 cut(s)	395, 435, 717
Sau3AI	GATC	2 cut(s)	262, 730
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	3 cut(s)	281, 798, 848
SduI	GDGCHC	2 cut(s)	593, 889
SfaNI	GCATC	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	2 cut(s)	258, 448
SmlI	CTYRAG	4 cut(s)	74, 377, 672, 837
SmoI	CTYRAG	4 cut(s)	74, 377, 672, 837
Sse9I	AATT	4 cut(s)	9, 572, 734, 830
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	3 cut(s)	80, 285, 758
StyD4I	CCNGG	3 cut(s)	279, 796, 846
StyI	CCWWGG	2 cut(s)	386, 808
TaaI	ACNGT	4 cut(s)	48, 257, 877, 927
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	75, 793, 825
TasI	AATT	4 cut(s)	9, 572, 734, 830
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	5 cut(s)	12, 329, 378, 803, 857
Tru9I	TTAA	5 cut(s)	12, 329, 378, 803, 857
TscAI	CASTG	3 cut(s)	260, 340, 880
TseFI	GTSAC	3 cut(s)	510, 551, 869
TseI	GCWGC	2 cut(s)	394, 716
Tsp45I	GTSAC	3 cut(s)	510, 551, 869
TspDTI	ATGAA	4 cut(s)	557, 648, 660, 741
TspRI	CASTG	3 cut(s)	260, 340, 880
Tth111I	GACNNNGTC	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	3 cut(s)	80, 285, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.