Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

89385075 .. 89387141

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGCAAATTACAAAGGGAAAGAGGTTGATCTTGTTCCCTGTTCCCCTTGAAGGCCATATAAACCCCATGCTAAAGCTAGCCAATCTTCTCTACTCCAAAGGCTTCTCCATAACCATCATCCACACCAAATTTAACTTCCCAAACCCTTCACTCCATCCACACTTCACCTTTCGCTCAATCCCAGATGGGTTGTCTGAAACTGAGGCTTCCCCCGAAGATATCATCCATCTCTTCTCTCTTTTCAATACTAAATGTGTTGAACCCTTCAAGGAATGCTTGTGTAGCTTGTTATCAGAGGAGCCTATTGCTTGTTTGATCTCTGACTCTATATTCCATTTCACTCATTCTGTTGCTGAGACCTTTAAGCTCCCAAGGATTGTCTTTGAGACCGGGGGCATGACTTCCTATGCTGTTTTTACTCAATTTCCACTACTAAAAGAAAAAGGCTACATTCCGGTGACGCAAGATTCTCAACTAGAAAAGGTGGTGCCGGAGCTTCCACCTCTCAGAATCAAAGACCTTCCGGTTTTCCCAAAGGGCGACCCGGAGAAACATTTTGAACTATGTGCAGTTATTGTGGCCAAAGTTGCAGCCTCTGATGGAGTCATTTTTAACACTTTTAGAGATCTTGAAGAACAAGGACTGGCAACATTGCACAAACAATTCCCTAATCTTCCAGTTTTCCCAATAGGCCCATTCCACAAGTGTGTCCCTGAGGAAGCCTCTTCTTCAACTAGTGATCAAAGTTGCATTTCTTGGCTAAACACTCAAGTACCAAACTCTGTTATTTATGTTAGCTTTGGGACCCTTGCAGCAATAACCAAGACGCAGTTTTTGGAGATAGCTTGGGGATTAGCTAACAGCCACCAACCTTTCTTGTGGGTGGTTCGACCTGGCTTAGTCCATGGGTCAGACTGGCTTGAATCATTGCCTACTGGATTTCTTGAGAATTTGAATGAGAGGGGTCACATTGTGAAACGGGCACCCCAAAAAAAGTGTTGGCACATCCATCAGTTGGAGCTTTTTGGACTCACAATGGTTGGAATTCTACATTGGAGAGTGTGTGTGAAGGTGTCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

361

Amino Acids

40.59

Weight (kDa)

6.46

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	490, 985
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	3 cut(s)	131, 952, 1047
AdeI	CACNNNGTG	1 cut(s)	976
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	53, 1018
AgsI	TTSAA	9 cut(s)	53, 247, 263, 271, 563, 635, 735, 926, 958
AhlI	ACTAGT	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	895
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 1039, 1071
AleI	CACNNNNGTG	1 cut(s)	708
AluBI	AGCT	8 cut(s)	79, 288, 370, 499, 801, 848, 860, 1024
AluI	AGCT	8 cut(s)	79, 288, 370, 499, 801, 848, 860, 1024
Alw26I	GTCTC	2 cut(s)	353, 383
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	55, 582, 694
ApeKI	GCWGC	2 cut(s)	593, 815
ApoI	RAATTY	3 cut(s)	131, 952, 1047
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
AspS9I	GGNCC	2 cut(s)	695, 807
AsuC2I	CCSGG	2 cut(s)	394, 548
AsuHPI	GGTGA	2 cut(s)	160, 472
AsuNHI	GCTAGC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	717
BaeGI	GKGCMC	1 cut(s)	988
BaeI	ACNNNNGTAYC	2 cut(s)	759, 792
BalI	TGGCCA	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	490, 985
BbvI	GCAGC	2 cut(s)	605, 827
BccI	CCATC	6 cut(s)	125, 165, 182, 237, 596, 1020
BciT130I	CCWGG	1 cut(s)	897
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	2 cut(s)	394, 548
BcoDI	GTCTC	2 cut(s)	353, 383
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	3 cut(s)	80, 479, 738
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	2 cut(s)	594, 816
BlsI	GCNGC	2 cut(s)	595, 817
Bme1390I	CCNGG	3 cut(s)	394, 548, 897
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	695, 807
BmiI	GGNNCC	5 cut(s)	303, 492, 808, 809, 987
BmrFI	CCNGG	3 cut(s)	394, 548, 897
BmtI	GCTAGC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpuEI	CTTGAG	2 cut(s)	756, 968
BpuMI	CCSGG	2 cut(s)	394, 548
BsaI	GGTCTC	2 cut(s)	353, 383
BsaJI	CCNNGG	3 cut(s)	374, 393, 907
BsaWI	WCCGGW	2 cut(s)	457, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	1051, 1081
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 1018
Bse1I	ACTGG	4 cut(s)	651, 680, 923, 943
Bse21I	CCTNAGG	1 cut(s)	717
Bse3DI	GCAATG	2 cut(s)	653, 929
BseBI	CCWGG	1 cut(s)	897
BseDI	CCNNGG	3 cut(s)	374, 393, 907
BseGI	GGATG	4 cut(s)	120, 157, 225, 1008
BseLI	CCNNNNNNNGG	2 cut(s)	53, 1018
BseMI	GCAATG	2 cut(s)	653, 929
BseMII	CTCAG	4 cut(s)	195, 348, 523, 708
BseNI	ACTGG	4 cut(s)	651, 680, 923, 943
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	2 cut(s)	605, 827
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	57, 584, 696
BshNI	GGYRCC	2 cut(s)	490, 985
BsiSI	CCGG	5 cut(s)	393, 458, 494, 527, 548
BslFI	GGGAC	3 cut(s)	698, 820, 1063
BslI	CCNNNNNNNGG	2 cut(s)	53, 1018
BsmAI	GTCTC	2 cut(s)	353, 383
BsmFI	GGGAC	3 cut(s)	698, 820, 1063
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	57, 584, 696
Bso31I	GGTCTC	2 cut(s)	353, 383
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	4 cut(s)	30, 318, 628, 742
Bsp19I	CCATGG	1 cut(s)	907
BspANI	GGCC	3 cut(s)	57, 584, 696
BspCNI	CTCAG	4 cut(s)	196, 349, 522, 709
BspLI	GGNNCC	5 cut(s)	303, 492, 808, 809, 987
BspOI	GCTAGC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	490, 985
BspTNI	GGTCTC	2 cut(s)	353, 383
BsrDI	GCAATG	2 cut(s)	653, 929
BsrI	ACTGG	4 cut(s)	651, 680, 923, 943
BssECI	CCNNGG	3 cut(s)	374, 393, 907
BssMI	GATC	4 cut(s)	30, 318, 628, 742
BssT1I	CCWWGG	2 cut(s)	374, 907
Bst2UI	CCWGG	1 cut(s)	897
Bst6I	CTCTTC	2 cut(s)	239, 733
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	5 cut(s)	204, 357, 509, 717, 901
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	4 cut(s)	120, 157, 225, 1008
BstKTI	GATC	4 cut(s)	33, 321, 631, 745
BstMAI	GTCTC	2 cut(s)	353, 383
BstMBI	GATC	4 cut(s)	30, 318, 628, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 590
BstNI	CCWGG	1 cut(s)	897
BstSCI	CCNGG	3 cut(s)	392, 546, 895
BstSLI	GKGCMC	1 cut(s)	988
BstV1I	GCAGC	2 cut(s)	605, 827
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	57, 584, 696
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	4 cut(s)	120, 157, 225, 1008
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	695, 807
CseI	GACGC	2 cut(s)	472, 838
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	3 cut(s)	70, 400, 908
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	5 cut(s)	204, 357, 509, 717, 901
DpnI	GATC	4 cut(s)	32, 320, 630, 744
DpnII	GATC	4 cut(s)	30, 318, 628, 742
DraIII	CACNNNGTG	1 cut(s)	976
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	239, 733
EarI	CTCTTC	2 cut(s)	239, 733
Eco130I	CCWWGG	2 cut(s)	374, 907
Eco31I	GGTCTC	2 cut(s)	353, 383
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	807
Eco81I	CCTNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	1 cut(s)	895
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	374, 907
ErhI	CCWWGG	2 cut(s)	374, 907
FaeI	CATG	3 cut(s)	73, 403, 911
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	3 cut(s)	698, 820, 1063
FatI	CATG	3 cut(s)	69, 399, 907
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	2 cut(s)	594, 816
FokI	GGATG	4 cut(s)	107, 144, 212, 995
Fsp4HI	GCNGC	2 cut(s)	594, 816
FspBI	CTAG	3 cut(s)	80, 479, 738
GluI	GCNGC	2 cut(s)	594, 816
HaeIII	GGCC	3 cut(s)	57, 584, 696
HapII	CCGG	5 cut(s)	393, 458, 494, 527, 548
HgaI	GACGC	2 cut(s)	472, 838
Hin1II	CATG	3 cut(s)	73, 403, 911
HinfI	GANTC	6 cut(s)	326, 470, 513, 606, 926, 1032
HpaII	CCGG	5 cut(s)	393, 458, 494, 527, 548
HphI	GGTGA	2 cut(s)	160, 472
Hpy188I	TCNGA	6 cut(s)	199, 298, 325, 512, 601, 916
Hpy188III	TCNNGA	2 cut(s)	632, 947
HpyAV	CCTTC	5 cut(s)	47, 159, 277, 533, 1066
HpyCH4V	TGCA	5 cut(s)	572, 593, 658, 753, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 590
HpyF3I	CTNAG	5 cut(s)	204, 357, 509, 717, 901
Hsp92II	CATG	3 cut(s)	73, 403, 911
KflI	GGGWCCC	1 cut(s)	807
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	30, 318, 628, 742
LmnI	GCTCC	5 cut(s)	4, 301, 375, 496, 1021
Lsp1109I	GCAGC	2 cut(s)	605, 827
MaeI	CTAG	3 cut(s)	80, 479, 738
MaeIII	GTNAC	2 cut(s)	460, 968
MalI	GATC	4 cut(s)	32, 320, 630, 744
MboI	GATC	4 cut(s)	30, 318, 628, 742
MboII	GAAGA	7 cut(s)	80, 226, 230, 647, 668, 720, 723
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	988
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	6 cut(s)	9, 131, 425, 665, 952, 1047
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	3 cut(s)	320, 615, 1026
MmeI	TCCRAC	2 cut(s)	999, 1024
MnlI	CCTC	8 cut(s)	18, 199, 292, 516, 607, 712, 736, 957
Mox20I	TGGCCA	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	3 cut(s)	135, 366, 615
MslI	CAYNNNNRTG	2 cut(s)	458, 708
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	5 cut(s)	393, 458, 494, 527, 548
MspR9I	CCNGG	3 cut(s)	394, 548, 897
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	2 cut(s)	285, 590
NciI	CCSGG	2 cut(s)	394, 548
NcoI	CCATGG	1 cut(s)	907
NdeII	GATC	4 cut(s)	30, 318, 628, 742
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	73, 403, 911
NlaIV	GGNNCC	5 cut(s)	303, 492, 808, 809, 987
NmuCI	GTSAC	2 cut(s)	460, 968
OliI	CACNNNNGTG	1 cut(s)	708
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	470, 513, 926
PflMI	CCANNNNNTGG	1 cut(s)	1018
PkrI	GCNGC	2 cut(s)	595, 817
PleI	GAGTC	3 cut(s)	320, 614, 1026
PpsI	GAGTC	3 cut(s)	320, 614, 1026
PpuMI	RGGWCCY	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	5 cut(s)	303, 492, 808, 809, 987
PspPI	GGNCC	2 cut(s)	695, 807
PspPPI	RGGWCCY	1 cut(s)	807
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	2 cut(s)	458, 708
SaqAI	TTAA	3 cut(s)	135, 366, 615
SatI	GCNGC	2 cut(s)	594, 816
Sau3AI	GATC	4 cut(s)	30, 318, 628, 742
Sau96I	GGNCC	2 cut(s)	695, 807
SchI	GAGTC	3 cut(s)	320, 615, 1026
ScrFI	CCNGG	3 cut(s)	394, 548, 897
SduI	GDGCHC	1 cut(s)	988
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	2 cut(s)	458, 708
SmlI	CTYRAG	2 cut(s)	771, 947
SmoI	CTYRAG	2 cut(s)	771, 947
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	6 cut(s)	9, 131, 425, 665, 952, 1047
SspMI	CTAG	3 cut(s)	80, 479, 738
StyD4I	CCNGG	3 cut(s)	392, 546, 895
StyI	CCWWGG	2 cut(s)	374, 907
TaqI	TCGA	1 cut(s)	892
TasI	AATT	6 cut(s)	9, 131, 425, 665, 952, 1047
TfiI	GAWTC	3 cut(s)	470, 513, 926
Tru1I	TTAA	3 cut(s)	135, 366, 615
Tru9I	TTAA	3 cut(s)	135, 366, 615
TseFI	GTSAC	2 cut(s)	460, 968
TseI	GCWGC	2 cut(s)	593, 815
Tsp45I	GTSAC	2 cut(s)	460, 968
Van91I	CCANNNNNTGG	1 cut(s)	1018
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	3 cut(s)	131, 952, 1047
XspI	CTAG	3 cut(s)	80, 479, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.