Rw7G012670

KAT8 regulatory NSL complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007737
Physical Location & Seq
Forward (+)
12030325 .. 12032402
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012670.1

Sequence Viewer

Length: 696 bp
ATGGCTTCACCACCAAGTCCAAAACGCAGGCGTAAGGATGACGATAGAAATGAAACGGCAGCAACATCGCCGGAGAAATCATCCCCTGTGGTGGTCTTTGCTCACGGCGCCGGTGCTCCCTCTTCTTCTGATTGGATGATCAGATGGAAGGATATGTTGGGAAAAGCACTAAATGCTGTTGAAGTTGTTGCCTTTGATTACCCATACATGTCTGGTGGGAAAAAGAGAGCCCCTCCGAAGGCTGAAAAGTTGGTCGATTTTCACGCTGATTTTGTGAAGAAAACTGTTGAAAAGTACCCAGGTCATCCATTGATTTTGGCTGGAAAATCTATGGGTTCAAGAGTCAGCTGCATGGTAGCTTGCAAGGAAGATATTCATGCTTCAGCAATTGTTTGCTTAGGGTACCCACTAAAGGGTATTAATGGGGCACTGAGAGATGAAACTCTGTTGCGACTTTCAATTCCTGTAATGTTTGTCCAGGGTAGTAAAGATGCACTTTGTCCATTGGAAAACCTAGAAGTTACTCGCAAGAAGATAAAATGTCTTAGTGGTTTGCATGTGATTGATGGTGGCGACCACTCCTTCAAGATTGGAAAGAAGCAGCTGCAAACCACTGGGTTAACGCAAGACCAAGCTGAAGATCTTGCAGTTGAGGCAATTGCAGCCTTTCTGTCAAGTTTTCTTGTAGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

231

Amino Acids

25.11

Weight (kDa)

9.02

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_11 PF20408 29 - 224 1.5e-42 Alpha/beta hydrolase domain
Abhydrolase_1 PF00561 29 - 134 1e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 31 - 139 1.4e-08 Alpha/beta hydrolase family
Abhydrolase_5 PF12695 88 - 194 2.3e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 107, 402
AcuI CTGAAG 2 cut(s) 366, 657
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 296, 404
AfiI CCNNNNNNNGG 4 cut(s) 91, 238, 412, 413
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 5 cut(s) 182, 290, 339, 459, 586
AjnI CCWGG 2 cut(s) 298, 477
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 348, 359, 604, 635
AluI AGCT 4 cut(s) 348, 359, 604, 635
Alw21I GWGCWC 1 cut(s) 118
ApeKI GCWGC 5 cut(s) 59, 348, 601, 604, 662
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 372
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 430
BanI GGYRCC 2 cut(s) 107, 402
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 71, 335, 591, 613, 674
BccI CCATC 2 cut(s) 138, 560
BceAI ACGGC 2 cut(s) 72, 121
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 2 cut(s) 300, 479
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 111
BglII AGATCT 1 cut(s) 640
BisI GCNGC 5 cut(s) 60, 349, 602, 605, 663
BlsI GCNGC 5 cut(s) 61, 350, 603, 606, 664
Bme1390I CCNGG 2 cut(s) 300, 479
BmiI GGNNCC 2 cut(s) 109, 404
BmrFI CCNGG 2 cut(s) 300, 479
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 624
BplI GAGNNNNNCTC 2 cut(s) 217, 249
Bpu10I CCTNAGC 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 298, 478
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 238, 412, 413
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 619
BseBI CCWGG 2 cut(s) 300, 479
BseDI CCNNGG 2 cut(s) 298, 478
BseGI GGATG 4 cut(s) 43, 80, 141, 304
BseLI CCNNNNNNNGG 4 cut(s) 91, 238, 412, 413
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 619
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 5 cut(s) 71, 335, 591, 613, 674
BshNI GGYRCC 2 cut(s) 107, 402
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 2 cut(s) 71, 111
BslI CCNNNNNNNGG 4 cut(s) 91, 238, 412, 413
Bsp1286I GDGCHC 3 cut(s) 118, 232, 430
Bsp143I GATC 2 cut(s) 138, 640
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 109, 404
BspT107I GGYRCC 2 cut(s) 107, 402
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 298, 478
BssMI GATC 2 cut(s) 138, 640
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 300, 479
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 29, 361
BstDEI CTNAG 3 cut(s) 397, 431, 545
BstF5I GGATG 4 cut(s) 43, 80, 141, 304
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 141, 643
BstMBI GATC 2 cut(s) 138, 640
BstMWI GCNNNNNNNGC 4 cut(s) 107, 173, 653, 662
BstNI CCWGG 2 cut(s) 300, 479
BstNSI RCATGY 2 cut(s) 211, 560
BstSCI CCNGG 2 cut(s) 298, 477
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 5 cut(s) 71, 335, 591, 613, 674
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 4 cut(s) 43, 80, 141, 304
BtsIMutI CAGTG 2 cut(s) 428, 612
Cac8I GCNNGC 2 cut(s) 29, 361
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 110
Csp6I GTAC 2 cut(s) 295, 403
CviAII CATG 4 cut(s) 208, 352, 377, 557
CviJI RGCY 9 cut(s) 5, 230, 242, 320, 348, 359, 604, 635, 665
CviKI_1 RGCY 9 cut(s) 5, 230, 242, 320, 348, 359, 604, 635, 665
CviQI GTAC 2 cut(s) 295, 403
DdeI CTNAG 3 cut(s) 397, 431, 545
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 140, 642
DpnII GATC 2 cut(s) 138, 640
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 366, 657
EcoRII CCWGG 2 cut(s) 298, 477
EcoT38I GRGCYC 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
FaeI CATG 4 cut(s) 211, 355, 380, 560
FaiI YATR 7 cut(s) 155, 205, 209, 332, 353, 378, 558
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 4 cut(s) 207, 351, 376, 556
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 5 cut(s) 60, 349, 602, 605, 663
FokI GGATG 4 cut(s) 50, 67, 148, 291
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 5 cut(s) 60, 349, 602, 605, 663
FspBI CTAG 1 cut(s) 515
GlaI GCGC 1 cut(s) 109
GluI GCNGC 5 cut(s) 60, 349, 602, 605, 663
HaeII RGCGCY 1 cut(s) 111
HapII CCGG 2 cut(s) 71, 111
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 211, 355, 380, 560
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 1 cut(s) 342
HpaI GTTAAC 1 cut(s) 621
HpaII CCGG 2 cut(s) 71, 111
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 3 cut(s) 130, 143, 237
Hpy188III TCNNGA 2 cut(s) 339, 586
Hpy8I GTNNAC 1 cut(s) 621
HpyAV CCTTC 3 cut(s) 142, 232, 592
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 7 cut(s) 351, 363, 494, 556, 607, 647, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 173, 653, 662
HpyF3I CTNAG 3 cut(s) 397, 431, 545
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 211, 355, 380, 560
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 138
KspAI GTTAAC 1 cut(s) 621
Kzo9I GATC 2 cut(s) 138, 640
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 5 cut(s) 71, 335, 591, 613, 674
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 515
MaeIII GTNAC 1 cut(s) 520
MalI GATC 2 cut(s) 140, 642
MboI GATC 2 cut(s) 138, 640
MboII GAAGA 6 cut(s) 114, 117, 289, 380, 544, 650
MfeI CAATTG 2 cut(s) 387, 657
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 3 cut(s) 118, 232, 430
MluCI AATT 3 cut(s) 387, 459, 657
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 3 cut(s) 130, 243, 646
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 420, 620
MspA1I CMGCKG 2 cut(s) 348, 604
MspI CCGG 2 cut(s) 71, 111
MspR9I CCNGG 2 cut(s) 300, 479
MunI CAATTG 2 cut(s) 387, 657
MvaI CCWGG 2 cut(s) 300, 479
MwoI GCNNNNNNNGC 4 cut(s) 107, 173, 653, 662
NarI GGCGCC 1 cut(s) 108
NdeII GATC 2 cut(s) 138, 640
NlaIII CATG 4 cut(s) 211, 355, 380, 560
NlaIV GGNNCC 2 cut(s) 109, 404
NspI RCATGY 2 cut(s) 211, 560
PciI ACATGT 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 372
PkrI GCNGC 5 cut(s) 61, 350, 603, 606, 664
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 350
PscI ACATGT 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 298, 477
PspGI CCWGG 2 cut(s) 298, 477
PspN4I GGNNCC 2 cut(s) 109, 404
PsuI RGATCY 1 cut(s) 640
PvuII CAGCTG 2 cut(s) 348, 604
RsaI GTAC 2 cut(s) 296, 404
RsaNI GTAC 2 cut(s) 295, 403
SaqAI TTAA 2 cut(s) 420, 620
SatI GCNGC 5 cut(s) 60, 349, 602, 605, 663
Sau3AI GATC 2 cut(s) 138, 640
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 2 cut(s) 300, 479
SduI GDGCHC 3 cut(s) 118, 232, 430
SetI ASST 7 cut(s) 304, 350, 361, 516, 606, 637, 695
SfaNI GCATC 1 cut(s) 481
SfoI GGCGCC 1 cut(s) 109
SgrAI CRCCGGYG 1 cut(s) 110
Sse9I AATT 3 cut(s) 387, 459, 657
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 2 cut(s) 298, 477
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 387, 459, 657
Tru1I TTAA 2 cut(s) 420, 620
Tru9I TTAA 2 cut(s) 420, 620
TscAI CASTG 2 cut(s) 435, 619
TseI GCWGC 5 cut(s) 59, 348, 601, 604, 662
TspDTI ATGAA 3 cut(s) 66, 365, 453
TspRI CASTG 2 cut(s) 435, 619
VspI ATTAAT 1 cut(s) 420
XceI RCATGY 2 cut(s) 211, 560
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.