Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007737

Physical Location & Seq

Genomic Coordinates Reverse (-)

2585792 .. 2587663

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCTCACCACCGAGTCCAAAACGCCGGCGTATAGATGACGACACAAATGAAACGGCGGCAAAATCGCCGGAGAAATCTTCCCCTGTGGTCGTCTTTGCTCACGGCGCCGGTGCTCCCTCTTCTTCTGATTGGATGATCAGATGGAAGGATATGTTGGGTAAAGCACTAAATGCTGTTGAAGTTGTTACTTTTGATTACCCATATATGTCTGGTGGGAAAAAGAGAGCTCCTCCGAAGGCTGAAAAGTTGGTTGATTTTCACGCCGATTTTGTGAAGCAAACTGTTGCTAAATACCCAGGTCATCCATTGGTTTTGGCTGGAAAATCTATGGGTTCAAGAGTGAGCTGCATGGTAGCTTGCAAGGAAGATATTCATGCTTCAGCAATTGTTTGCTTAGGATACCCACTAAAGGTTAGGTGTTACGAAGTTTTCCCCACATCACATTTTCTGTCCAAGATATATTTTTCTTCTTCTTCACTTCCATTTTGGGTATGCTTATTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

170

Amino Acids

18.57

Weight (kDa)

9.21

Isoelectric Point (pI)

65.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_11	PF20408	29 - 138	5.1e-28	Alpha/beta hydrolase domain
Abhydrolase_1	PF00561	29 - 135	1e-09	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	31 - 136	7e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41850
fragaria_vesca	FvH4_5g04410 FvH4_5g04410 FvH4_5g04410
malus_domestica	MD06G1104500.v1.1 MD06G1104600.v1.1 MD14G1123300.v1.1
prunus_persica	Prupe.5G117200_v2.0.a1 Prupe.5G117200_v2.0.a1 Prupe.5G117200_v2.0.a1
pyrus_communis	pycom06g09910
rosa_chinensis	RchiOBHm_Chr7g0195141 RchiOBHm_Chr7g0195151
rosa_laevigata	RLG00000004143 RLG00000004144
rosa_multiflora	Rmu_sc0002381.1_g000025
rosa_roxburghii	Rroxscaffold_3G00260750
rosa_rugosa	Rorug07G0021000
rosa_samantha	Rh7AG148400 Rh7BG149300 Rh7BG149500 Rh7CG152900 Rh7DG149600
rosa_wichuraiana	Rw7G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	182, 339
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	230, 348, 359
AluI	AGCT	3 cut(s)	230, 348, 359
Alw21I	GWGCWC	2 cut(s)	118, 232
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	118, 232
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	2 cut(s)	72, 121
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	395
BclI	TGATCA	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	60, 349
BlsI	GCNGC	2 cut(s)	61, 350
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
Bpu10I	CCTNAGC	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	2 cut(s)	27, 110
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	141, 304
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	335
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	118, 232
BsiSI	CCGG	3 cut(s)	28, 71, 111
BslI	CCNNNNNNNGG	1 cut(s)	412
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	118, 232
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	2 cut(s)	27, 110
BssAI	RCCGGY	2 cut(s)	27, 110
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	29, 361
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	141, 304
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 173
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	141, 304
Cac8I	GCNNGC	2 cut(s)	29, 361
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	27, 110
CviAII	CATG	2 cut(s)	352, 377
CviJI	RGCY	6 cut(s)	5, 230, 242, 320, 348, 359
CviKI_1	RGCY	6 cut(s)	5, 230, 242, 320, 348, 359
DdeI	CTNAG	1 cut(s)	397
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	2 cut(s)	355, 380
FatI	CATG	2 cut(s)	351, 376
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	60, 349
FokI	GGATG	2 cut(s)	148, 291
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	60, 349
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	60, 349
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	28, 71, 111
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	355, 380
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	28, 71, 111
Hpy188I	TCNGA	3 cut(s)	130, 143, 237
Hpy188III	TCNNGA	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	142, 232
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	351, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 173
HpyF3I	CTNAG	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	355, 380
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	121, 235
LpnPI	CCDG	8 cut(s)	41, 84, 99, 124, 198, 285, 306, 312
Lsp1109I	GCAGC	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	187, 422
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	7 cut(s)	72, 114, 117, 380, 462, 465, 468
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	118, 232
MluCI	AATT	1 cut(s)	387
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	3 cut(s)	16, 130, 243
MreI	CGCCGGCG	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	508
MspI	CCGG	3 cut(s)	28, 71, 111
MspR9I	CCNGG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	107, 173
NaeI	GCCGGC	1 cut(s)	29
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	1 cut(s)	138
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	355, 380
NlaIV	GGNNCC	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	61, 350
PleI	GAGTC	1 cut(s)	24
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	2 cut(s)	60, 349
Sau3AI	GATC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	118, 232
SetI	ASST	6 cut(s)	232, 304, 350, 361, 417, 422
SfoI	GGCGCC	1 cut(s)	109
SgrAI	CRCCGGYG	2 cut(s)	27, 110
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	1 cut(s)	59
SspDI	GGCGCC	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	1 cut(s)	387
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	66, 365
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.