Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007737

Physical Location & Seq

Genomic Coordinates Forward (+)

12044151 .. 12046621

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG148400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGGGAAAAACACTAAATGCTGTTGAAGTTGTTGCCTTTGATTACCCATACATGTCTGGTGGGAAAAAGAGAGCCCCTCCGAAGGCTGAAAAGTTGGTCGATTTTCACGCTGATTTTGTGAAGAAAACTGTTGAAAAGCACCCAGGTCATCCATTGATTTTGGCTGGAAAATCTATGGGTTCAAGAGTCAGCTGCATGGTAGCTTGCAAGGAAGATATTCATGCTTCAGCAATTGTTTGCTTAGGGTACCCACTAAAGGGTATTAATGGGGCACTGCGAGATGAAACTCTGTTGCGACTTTCAATTCCTGTAATGTTTGTCCAGGGTAGTAAGGATGCACTTTGTCCGTTGGAAAAGCTAGAAGTTACTCGCAAGAAGATAAAATGTCTTAGTGGTTTGCATGTGATTGATGGTGGCGACCACTCCTTCAAGATTGGAAAGAAGCAACTGCAAACCACTGGGTTAACGCAAGACCAAGCTGAAGATCTTGCAGTTGAGGCAATTGCAGCCTTTCTGTCAAGTTTTCTTGGACAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

180

Amino Acids

19.49

Weight (kDa)

9.07

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_11	PF20408	7 - 173	1.6e-34	Alpha/beta hydrolase domain
Abhydrolase_1	PF00561	10 - 83	3.3e-06	alpha/beta hydrolase fold
Abhydrolase_5	PF12695	36 - 143	5.7e-07	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41850
fragaria_vesca	FvH4_5g04410 FvH4_5g04410 FvH4_5g04410
malus_domestica	MD06G1104500.v1.1 MD06G1104600.v1.1 MD14G1123300.v1.1
prunus_persica	Prupe.5G117200_v2.0.a1 Prupe.5G117200_v2.0.a1 Prupe.5G117200_v2.0.a1
pyrus_communis	pycom06g09910
rosa_chinensis	RchiOBHm_Chr7g0195141 RchiOBHm_Chr7g0195151
rosa_laevigata	RLG00000004143 RLG00000004144
rosa_multiflora	Rmu_sc0002381.1_g000025
rosa_roxburghii	Rroxscaffold_3G00260750
rosa_rugosa	Rorug07G0021000
rosa_samantha	Rh7AG148400 Rh7BG149300 Rh7BG149500 Rh7CG152900 Rh7DG149600
rosa_wichuraiana	Rw7G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AcuI	CTGAAG	2 cut(s)	213, 504
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	85, 259, 260
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	5 cut(s)	29, 137, 186, 306, 433
AjnI	CCWGG	2 cut(s)	145, 324
AluBI	AGCT	4 cut(s)	195, 206, 361, 482
AluI	AGCT	4 cut(s)	195, 206, 361, 482
ApeKI	GCWGC	2 cut(s)	195, 509
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	219
Asp718I	GGTACC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	182, 521
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	147, 326
BfaI	CTAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	2 cut(s)	196, 510
BlsI	GCNGC	2 cut(s)	197, 511
Bme1390I	CCNGG	2 cut(s)	147, 326
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	147, 326
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
Bpu10I	CCTNAGC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	145, 325
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 259, 260
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	2 cut(s)	147, 326
BseDI	CCNNGG	2 cut(s)	145, 325
BseGI	GGATG	2 cut(s)	151, 343
BseLI	CCNNNNNNNGG	3 cut(s)	85, 259, 260
BseNI	ACTGG	1 cut(s)	466
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	182, 521
BshNI	GGYRCC	1 cut(s)	249
BslI	CCNNNNNNNGG	3 cut(s)	85, 259, 260
Bsp1286I	GDGCHC	2 cut(s)	79, 277
Bsp143I	GATC	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	145, 325
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	147, 326
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	244, 392
BstF5I	GGATG	2 cut(s)	151, 343
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 509
BstNI	CCWGG	2 cut(s)	147, 326
BstNSI	RCATGY	2 cut(s)	58, 407
BstSCI	CCNGG	2 cut(s)	145, 324
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	182, 521
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	151, 343
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	275, 459
Cac8I	GCNNGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	4 cut(s)	55, 199, 224, 404
CviJI	RGCY	8 cut(s)	77, 89, 167, 195, 206, 361, 482, 512
CviKI_1	RGCY	8 cut(s)	77, 89, 167, 195, 206, 361, 482, 512
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	244, 392
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	213, 504
EcoRII	CCWGG	2 cut(s)	145, 324
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	4 cut(s)	58, 202, 227, 407
FaiI	YATR	6 cut(s)	52, 56, 179, 200, 225, 405
FatI	CATG	4 cut(s)	54, 198, 223, 403
Fnu4HI	GCNGC	2 cut(s)	196, 510
FokI	GGATG	2 cut(s)	138, 350
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	196, 510
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	196, 510
Hin1II	CATG	4 cut(s)	58, 202, 227, 407
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HinfI	GANTC	1 cut(s)	189
HpaI	GTTAAC	1 cut(s)	468
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	186, 433
Hpy8I	GTNNAC	1 cut(s)	468
HpyAV	CCTTC	2 cut(s)	79, 439
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	7 cut(s)	198, 210, 341, 403, 454, 494, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 509
HpyF3I	CTNAG	2 cut(s)	244, 392
Hsp92II	CATG	4 cut(s)	58, 202, 227, 407
KpnI	GGTACC	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	487
LpnPI	CCDG	8 cut(s)	45, 132, 153, 159, 311, 324, 338, 447
Lsp1109I	GCAGC	2 cut(s)	182, 521
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	4 cut(s)	136, 227, 391, 497
MfeI	CAATTG	2 cut(s)	234, 504
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	79, 277
MluCI	AATT	3 cut(s)	234, 306, 504
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	2 cut(s)	90, 493
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	2 cut(s)	267, 467
MspA1I	CMGCKG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	147, 326
MunI	CAATTG	2 cut(s)	234, 504
MvaI	CCWGG	2 cut(s)	147, 326
MwoI	GCNNNNNNNGC	2 cut(s)	500, 509
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	58, 202, 227, 407
NlaIV	GGNNCC	1 cut(s)	251
NspI	RCATGY	2 cut(s)	58, 407
PciI	ACATGT	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	197, 511
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	145, 324
PspGI	CCWGG	2 cut(s)	145, 324
PspN4I	GGNNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	267, 467
SatI	GCNGC	2 cut(s)	196, 510
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	2 cut(s)	147, 326
SduI	GDGCHC	2 cut(s)	79, 277
SetI	ASST	6 cut(s)	151, 197, 208, 363, 484, 542
SfaNI	GCATC	1 cut(s)	328
Sse9I	AATT	3 cut(s)	234, 306, 504
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	145, 324
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	234, 306, 504
Tru1I	TTAA	2 cut(s)	267, 467
Tru9I	TTAA	2 cut(s)	267, 467
TscAI	CASTG	2 cut(s)	282, 466
TseI	GCWGC	2 cut(s)	195, 509
TspDTI	ATGAA	2 cut(s)	212, 300
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	282, 466
VspI	ATTAAT	1 cut(s)	267
XceI	RCATGY	2 cut(s)	58, 407
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.