AT5G41970

Uncharacterised protein family (UPF0160)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012304
Physical Location & Seq
Forward (+)
16791151 .. 16793261
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41970.1

Sequence Viewer

Length: 1122 bp
ATGATGTTTTCGGTAACGAAAGGTTTAATCAGAAACTTGGCCTTGTTCCAAGTTCGTCTTCCTCCTCTCGTAGCAGCAGTAATGGCTCCTTCAAGCGTCGTTAGGGTTTACTCTACCGCTACCTCTCCTTCTCCTTCTGAAATTTCCGTCAAGAAAGTTGGTACTCATAATGGAAGCTTTCACTGCGACGAAGCTCTCGGCTGTTTCATGATTCGCCTCGTCGATAAATTCTCCGGCGCTGATATCGTCCGTTCTCGTGACCCTAAGATATTGGCAGAACTTGATGCAGTGCTTGATGTTGGAGGTGTTTATGATCCGGAGCATGACCGTTATGATCATCACCAGAAAGGTTTTGAAGAGGTTTTTGGACATGGCTTCAACACTAAGCTCAGTAGTGCTGGTCTTGTTTACAAGCATTTTGGAAAGGAGATCATAGCTAAGGAACTTAATGTCGAACAAGATCACCCTGATGTTCTTCGGTTGTTTTTAGCTGTCTACAAGAGCTTCATGGAGGCAATTGATGCTGTGGACAATGGAATAAACCGGTATGATACTGATCAGCCTCCACGATATGTGAACAACACACATCTGTCTCCAAGGGTTGGAAGATTAAATCTGGATTGGATTGACCCTGACCAGTCACAAGAAAAGGAGAATGAAGCTTTCCAACGTGCAATGGCTCTAGCTGGAAAAGAGTTCCTCGAAAGTGTTCAGTTCCATGCAAGATCGTGGTTACCGGCTCGATCAATTGTGATGCAGTGTCTTGAAGAAAGATTCAAGACAGACCCCAGCGGTGAGATCATGATATTGGATAGATTTTGCCCTTGGAAGCTTCATTTGTTCGAGCTTGAGCAAGAAATGAAGATCGAGCCTCTCATCAAATACGTCATTTACCAGGACGAGAGAGCAAAGCAGTGGAGAGTTCAAGCAGTGGCGGTCGCACCAGACAGGTTTGAGAACCGAAAGCCTCTCCCTGAGAAATGGAGAGGCCTTAGGGATGAGGAACTCTCGAAAGCTGCTGAGATTCCCGGTTGTGTCTTTGTCCACATGAGTGGCTTTATCGGCGGAAACCAATCCTATGACGGCGCTCTATCCATGGCTCAAACCGCACTCACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

373

Amino Acids

42.3

Weight (kDa)

5.88

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 52 - 371 6.5e-139 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 602
AccI GTMKAC 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 5 cut(s) 117, 792, 935, 1065, 1107
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 141, 227
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 602
AgeI ACCGGT 1 cut(s) 543
AgsI TTSAA 6 cut(s) 93, 356, 379, 767, 778, 926
AjnI CCWGG 1 cut(s) 894
AjuI GAANNNNNNNTTGG 4 cut(s) 42, 74, 348, 380
AleI CACNNNNGTG 1 cut(s) 1050
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 1 cut(s) 308
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 2 cut(s) 39, 988
ApeKI GCWGC 2 cut(s) 74, 1016
ApoI RAATTY 2 cut(s) 141, 227
AsiGI ACCGGT 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 708
AspLEI GCGC 2 cut(s) 239, 1088
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 3 cut(s) 332, 455, 806
AxyI CCTNAGG 1 cut(s) 992
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 86, 1003
BceAI ACGGC 1 cut(s) 1099
BciT130I CCWGG 1 cut(s) 896
BclI TGATCA 2 cut(s) 334, 556
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 1 cut(s) 683
BfoI RGCGCY 2 cut(s) 240, 1089
BisI GCNGC 2 cut(s) 75, 1017
BlsI GCNGC 2 cut(s) 76, 1018
Bme1390I CCNGG 2 cut(s) 896, 1029
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 896, 1029
BmsI GCATC 3 cut(s) 274, 511, 744
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 869
BpuMI CCSGG 1 cut(s) 1029
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 3 cut(s) 596, 824, 1095
BsaWI WCCGGW 2 cut(s) 316, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse118I RCCGGY 2 cut(s) 543, 736
Bse1I ACTGG 1 cut(s) 637
Bse21I CCTNAGG 1 cut(s) 992
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 596, 824, 1095
BseGI GGATG 1 cut(s) 1003
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 3 cut(s) 403, 966, 1011
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 86, 1003
BseYI CCCAGC 1 cut(s) 788
Bsh1285I CGRYCG 1 cut(s) 939
BshFI GGCC 2 cut(s) 41, 990
BshTI ACCGGT 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 939
BsiSI CCGG 5 cut(s) 234, 317, 544, 737, 1029
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 597
BsnI GGCC 2 cut(s) 41, 990
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
Bsp19I CCATGG 1 cut(s) 1095
BspACI CCGC 5 cut(s) 117, 792, 935, 1065, 1107
BspANI GGCC 2 cut(s) 41, 990
BspCNI CTCAG 3 cut(s) 402, 967, 1012
BspEI TCCGGA 1 cut(s) 316
BspHI TCATGA 2 cut(s) 207, 801
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 2 cut(s) 543, 736
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 2 cut(s) 543, 736
BssECI CCNNGG 3 cut(s) 596, 824, 1095
BssMI GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 3 cut(s) 596, 824, 1095
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 521
BstDEI CTNAG 7 cut(s) 264, 384, 389, 438, 975, 992, 1020
BstDSI CCRYGG 1 cut(s) 1095
BstEII GGTNACC 1 cut(s) 732
BstF5I GGATG 1 cut(s) 1003
BstH2I RGCGCY 2 cut(s) 240, 1089
BstHHI GCGC 2 cut(s) 239, 1088
BstKTI GATC 9 cut(s) 316, 337, 432, 463, 559, 728, 746, 801, 867
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
BstMCI CGRYCG 1 cut(s) 939
BstMWI GCNNNNNNNGC 5 cut(s) 83, 183, 521, 1062, 1106
BstNI CCWGG 1 cut(s) 896
BstPI GGTNACC 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 894, 1027
BstV1I GCAGC 2 cut(s) 86, 1003
BstV2I GAAGAC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 1052
Bsu36I CCTNAGG 1 cut(s) 992
BsuRI GGCC 2 cut(s) 41, 990
BtgI CCRYGG 1 cut(s) 1095
BtsCI GGATG 1 cut(s) 1003
BtsI GCAGTG 5 cut(s) 181, 294, 764, 920, 936
BtsIMutI CAGTG 5 cut(s) 181, 294, 764, 920, 936
CciI TCATGA 2 cut(s) 207, 801
CfoI GCGC 2 cut(s) 239, 1088
Cfr10I RCCGGY 2 cut(s) 543, 736
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 543
CviAII CATG 8 cut(s) 208, 323, 371, 508, 719, 802, 1048, 1096
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 7 cut(s) 264, 384, 389, 438, 975, 992, 1020
DpnI GATC 9 cut(s) 315, 336, 431, 462, 558, 727, 745, 800, 866
DpnII GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 1 cut(s) 1080
Eco130I CCWWGG 3 cut(s) 596, 824, 1095
Eco147I AGGCCT 1 cut(s) 990
Eco32I GATATC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 992
Eco91I GGTNACC 1 cut(s) 732
EcoO65I GGTNACC 1 cut(s) 732
EcoRII CCWGG 1 cut(s) 894
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 3 cut(s) 596, 824, 1095
ErhI CCWWGG 3 cut(s) 596, 824, 1095
FaeI CATG 8 cut(s) 211, 326, 374, 511, 722, 805, 1051, 1099
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 8 cut(s) 207, 322, 370, 507, 718, 801, 1047, 1095
FbaI TGATCA 2 cut(s) 334, 556
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 75, 1017
FokI GGATG 1 cut(s) 1010
Fsp4HI GCNGC 2 cut(s) 75, 1017
FspBI CTAG 1 cut(s) 683
GlaI GCGC 2 cut(s) 238, 1087
GluI GCNGC 2 cut(s) 75, 1017
GsaI CCCAGC 1 cut(s) 792
HaeII RGCGCY 2 cut(s) 240, 1089
HaeIII GGCC 2 cut(s) 41, 990
HapII CCGG 5 cut(s) 234, 317, 544, 737, 1029
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 239, 1088
Hin1II CATG 8 cut(s) 211, 326, 374, 511, 722, 805, 1051, 1099
Hin6I GCGC 2 cut(s) 237, 1086
HinP1I GCGC 2 cut(s) 237, 1086
HindIII AAGCTT 3 cut(s) 175, 660, 830
HinfI GANTC 3 cut(s) 211, 774, 1024
HpaII CCGG 5 cut(s) 234, 317, 544, 737, 1029
HphI GGTGA 3 cut(s) 332, 455, 806
Hpy166II GTNNAC 6 cut(s) 109, 409, 496, 529, 577, 1045
Hpy188I TCNGA 3 cut(s) 32, 139, 1121
Hpy188III TCNNGA 9 cut(s) 151, 208, 257, 317, 617, 764, 778, 802, 1009
Hpy8I GTNNAC 6 cut(s) 109, 409, 496, 529, 577, 1045
Hpy99I CGWCG 3 cut(s) 101, 191, 224
HpyAV CCTTC 3 cut(s) 99, 138, 144
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 2 cut(s) 670, 885
HpyCH4V TGCA 4 cut(s) 287, 674, 722, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 183, 521, 1062, 1106
HpyF3I CTNAG 7 cut(s) 264, 384, 389, 438, 975, 992, 1020
HpySE526I ACGT 2 cut(s) 670, 885
Hsp92II CATG 8 cut(s) 211, 326, 374, 511, 722, 805, 1051, 1099
HspAI GCGC 2 cut(s) 237, 1086
Kpn2I TCCGGA 1 cut(s) 316
Ksp22I TGATCA 2 cut(s) 334, 556
Kzo9I GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
LmnI GCTCC 2 cut(s) 91, 319
Lsp1109I GCAGC 2 cut(s) 86, 1003
LweI GCATC 3 cut(s) 274, 511, 744
MaeI CTAG 1 cut(s) 683
MaeII ACGT 2 cut(s) 670, 885
MaeIII GTNAC 4 cut(s) 13, 257, 639, 732
MalI GATC 9 cut(s) 315, 336, 431, 462, 558, 727, 745, 800, 866
MboI GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
MboII GAAGA 6 cut(s) 50, 368, 467, 618, 779, 874
MfeI CAATTG 2 cut(s) 516, 747
MluCI AATT 4 cut(s) 141, 227, 516, 747
MmeI TCCRAC 3 cut(s) 280, 583, 691
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 3 cut(s) 26, 447, 611
MslI CAYNNNNRTG 2 cut(s) 468, 1050
MspA1I CMGCKG 1 cut(s) 792
MspI CCGG 5 cut(s) 234, 317, 544, 737, 1029
MspR9I CCNGG 2 cut(s) 896, 1029
MunI CAATTG 2 cut(s) 516, 747
MvaI CCWGG 1 cut(s) 896
MwoI GCNNNNNNNGC 5 cut(s) 83, 183, 521, 1062, 1106
NciI CCSGG 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 1095
NdeII GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
NlaIII CATG 8 cut(s) 211, 326, 374, 511, 722, 805, 1051, 1099
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 257, 639
OliI CACNNNNGTG 1 cut(s) 1050
PagI TCATGA 2 cut(s) 207, 801
PceI AGGCCT 1 cut(s) 990
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 3 cut(s) 211, 774, 1024
PflMI CCANNNNNTGG 1 cut(s) 602
PinAI ACCGGT 1 cut(s) 543
PkrI GCNGC 2 cut(s) 76, 1018
Psp6I CCWGG 1 cut(s) 894
PspEI GGTNACC 1 cut(s) 732
PspFI CCCAGC 1 cut(s) 788
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 1 cut(s) 87
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 2 cut(s) 468, 1050
SaqAI TTAA 3 cut(s) 26, 447, 611
SatI GCNGC 2 cut(s) 75, 1017
Sau3AI GATC 9 cut(s) 313, 334, 429, 460, 556, 725, 743, 798, 864
ScrFI CCNGG 2 cut(s) 896, 1029
SfaNI GCATC 3 cut(s) 274, 511, 744
SmiMI CAYNNNNRTG 2 cut(s) 468, 1050
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 4 cut(s) 141, 227, 516, 747
SseBI AGGCCT 1 cut(s) 990
SsiI CCGC 5 cut(s) 117, 792, 935, 1065, 1107
SspMI CTAG 1 cut(s) 683
StuI AGGCCT 1 cut(s) 990
StyD4I CCNGG 2 cut(s) 894, 1027
StyI CCWWGG 3 cut(s) 596, 824, 1095
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 2 cut(s) 673, 888
TaqI TCGA 7 cut(s) 222, 453, 702, 742, 843, 867, 1010
TasI AATT 4 cut(s) 141, 227, 516, 747
TfiI GAWTC 3 cut(s) 211, 774, 1024
Tru1I TTAA 3 cut(s) 26, 447, 611
Tru9I TTAA 3 cut(s) 26, 447, 611
TscAI CASTG 5 cut(s) 188, 294, 764, 920, 936
TseFI GTSAC 2 cut(s) 257, 639
TseI GCWGC 2 cut(s) 74, 1016
Tsp45I GTSAC 2 cut(s) 257, 639
TspDTI ATGAA 5 cut(s) 196, 496, 672, 824, 875
TspGWI ACGGA 2 cut(s) 136, 239
TspRI CASTG 5 cut(s) 188, 294, 764, 920, 936
Van91I CCANNNNNTGG 1 cut(s) 602
XapI RAATTY 2 cut(s) 141, 227
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.