Rh7CG083700

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012304
Physical Location & Seq
Reverse (-)
6076569 .. 6080216
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG083700.1

Sequence Viewer

Length: 1077 bp
ATGCTTCCCTTGGTAAGCAGAAGGTTTAAGCTGTCGACTAGTCTACCCTTAGTCTTCCACAGCCACCGCCCACGCTTCATGGCCTCCGCAGCTCCACCGCCCAAGCGCGTCGGAACCCACAATGGAAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGATAAGTTCTCCAACGCCGAAATCGTCCGCACCCGCGACCCCAAGGTCTTGGAGGGTTTGGACGCTGTGCTTGATGTTGGGGGTGTGTATGACCCGAGCACAGATCGGTACGATCATCACCAGAAGGGGTTTGAGGAGGTTTTTGGCCATGGGTTTAAGACCAAGCTGAGTAGTGCTGGACTGGTCTACAAGCATTTTGGGAAGGAAATAATAGCCAAGGAGCTTCAAGTTGATGAAGGACACCTTGATGTGCAGAGGCTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCGATTGATGCAGTTGACAATGGAATCAATCAGTATGATACAGACCAGCCTCCAAGATATGTGAATAATACACACTTATCTTCAAGGGTGGGGAGGTTGAATTTGGACTGGATAGATCCTGATCAATCATCTGAGAAGGAGAATGAAGCCTTTCAACAAGCAATGGCTCTAGCTGGCAGTGAATTTTTAAGTAGTCTGCGTTTTCATGCCAAATCATGGTTACCAGCACGGTCTATTGTGATGGAGTGTCTCCTAGCAAGATGGAGTATTGATGCTAGTGGAGAAATTATGGTTTTGAATCGGTTTTGTCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAGATGAAGATTGACCCTCCCATCAAATATGTTCTCTATCAGGATGATAGGAGTAAAAGCTGGCGAGTTCAAGCGGTGGCAGTTGCTCCTGATAGATTCGAGAGCCGAAAGCCTCTTGCATCTCAATGGCGAGGGCTTAGAGACGATGAGCTCTCAACAGTGACTGGGATTCCCGGATGTGTCTTTGTCCACATGAGCGGGTTTATCGGAGGAAATCAAACATACGAGGGTGCTCTGGCCATGGCAAAGGCTAGTCTGAAGCTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

358

Amino Acids

40.43

Weight (kDa)

6.5

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 37 - 355 3.1e-138 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 1005
AccI GTMKAC 3 cut(s) 35, 43, 360
AccII CGCG 2 cut(s) 108, 210
AciI CCGC 7 cut(s) 67, 87, 98, 202, 208, 881, 1005
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 319, 1044
AcsI RAATTY 2 cut(s) 565, 647
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 681
AgsI TTSAA 8 cut(s) 401, 549, 565, 620, 763, 797, 803, 878
AhlI ACTAGT 1 cut(s) 38
Alw21I GWGCWC 3 cut(s) 275, 960, 1042
Alw26I GTCTC 2 cut(s) 719, 942
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 2 cut(s) 433, 971
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 3 cut(s) 81, 319, 1044
ApeKI GCWGC 2 cut(s) 89, 153
ApoI RAATTY 2 cut(s) 565, 647
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 2 cut(s) 163, 284
AvaI CYCGRG 1 cut(s) 268
BalI TGGCCA 2 cut(s) 321, 1046
BanII GRGCYC 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 3 cut(s) 275, 960, 1042
BbvI GCAGC 2 cut(s) 101, 140
BccI CCATC 3 cut(s) 700, 720, 836
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 2 cut(s) 719, 942
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 5 cut(s) 39, 635, 719, 741, 1059
BisI GCNGC 2 cut(s) 90, 154
BlsI GCNGC 2 cut(s) 91, 155
Bme1390I CCNGG 1 cut(s) 981
BmeT110I CYCGRG 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 981
BmrI ACTGGG 1 cut(s) 981
BmsI GCATC 3 cut(s) 463, 727, 935
BmuI ACTGGG 1 cut(s) 981
BpiI GAAGAC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 981
BsaBI GATNNNNATC 1 cut(s) 585
BsaJI CCNNGG 7 cut(s) 9, 148, 216, 322, 390, 776, 1047
Bsc4I CCNNNNNNNGG 1 cut(s) 681
Bse1I ACTGG 3 cut(s) 360, 578, 976
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 585
BseDI CCNNGG 7 cut(s) 9, 148, 216, 322, 390, 776, 1047
BseGI GGATG 2 cut(s) 856, 989
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 1 cut(s) 681
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 2 cut(s) 332, 588
BseNI ACTGG 3 cut(s) 360, 578, 976
BseRI GAGGAG 2 cut(s) 323, 821
BseXI GCAGC 2 cut(s) 101, 140
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 2 cut(s) 108, 210
BshFI GGCC 3 cut(s) 83, 321, 1046
BsiHKAI GWGCWC 3 cut(s) 275, 960, 1042
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 981
BslI CCNNNNNNNGG 1 cut(s) 681
BsmAI GTCTC 2 cut(s) 719, 942
BsmBI CGTCTC 1 cut(s) 942
BsnI GGCC 3 cut(s) 83, 321, 1046
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 275, 960, 1042
Bsp143I GATC 4 cut(s) 277, 286, 580, 586
Bsp19I CCATGG 2 cut(s) 322, 1047
BspACI CCGC 7 cut(s) 67, 87, 98, 202, 208, 881, 1005
BspANI GGCC 3 cut(s) 83, 321, 1046
BspCNI CTCAG 2 cut(s) 333, 589
BspFNI CGCG 2 cut(s) 108, 210
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 1005
BsrDI GCAATG 1 cut(s) 633
BsrI ACTGG 3 cut(s) 360, 578, 976
BssECI CCNNGG 7 cut(s) 9, 148, 216, 322, 390, 776, 1047
BssMI GATC 4 cut(s) 277, 286, 580, 586
BssT1I CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
Bst4CI ACNGT 2 cut(s) 696, 967
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 2 cut(s) 640, 869
BstDEI CTNAG 4 cut(s) 49, 341, 597, 944
BstDSI CCRYGG 2 cut(s) 322, 1047
BstEII GGTNACC 1 cut(s) 684
BstF5I GGATG 2 cut(s) 856, 989
BstFNI CGCG 2 cut(s) 108, 210
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 4 cut(s) 280, 289, 583, 589
BstMAI GTCTC 2 cut(s) 719, 942
BstMBI GATC 4 cut(s) 277, 286, 580, 586
BstMWI GCNNNNNNNGC 3 cut(s) 89, 135, 473
BstPI GGTNACC 1 cut(s) 684
BstSCI CCNGG 1 cut(s) 979
BstUI CGCG 2 cut(s) 108, 210
BstV1I GCAGC 2 cut(s) 101, 140
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 3 cut(s) 83, 321, 1046
BtgI CCRYGG 2 cut(s) 322, 1047
BtsCI GGATG 2 cut(s) 856, 989
BtsI GCAGTG 2 cut(s) 133, 649
BtsIMutI CAGTG 3 cut(s) 133, 649, 972
Cac8I GCNNGC 2 cut(s) 640, 869
CaiI CAGNNNCTG 2 cut(s) 433, 971
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 108
CseI GACGC 2 cut(s) 97, 245
Csp6I GTAC 1 cut(s) 283
CviAII CATG 7 cut(s) 79, 160, 323, 671, 681, 1000, 1048
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 4 cut(s) 49, 341, 597, 944
DpnI GATC 4 cut(s) 279, 288, 582, 588
DpnII GATC 4 cut(s) 277, 286, 580, 586
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 319, 1044
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
Eco24I GRGCYC 1 cut(s) 960
Eco53kI GAGCTC 1 cut(s) 958
Eco88I CYCGRG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 958
EcoO65I GGTNACC 1 cut(s) 684
EcoT14I CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
Esp3I CGTCTC 1 cut(s) 942
FaeI CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 7 cut(s) 78, 159, 322, 670, 680, 999, 1047
FauI CCCGC 2 cut(s) 215, 998
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 3 cut(s) 35, 43, 360
Fnu4HI GCNGC 2 cut(s) 90, 154
FokI GGATG 2 cut(s) 863, 996
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 2 cut(s) 90, 154
FspBI CTAG 5 cut(s) 39, 635, 719, 741, 1059
GlaI GCGC 1 cut(s) 107
GluI GCNGC 2 cut(s) 90, 154
HaeIII GGCC 3 cut(s) 83, 321, 1046
HapII CCGG 1 cut(s) 981
HgaI GACGC 2 cut(s) 97, 245
HhaI GCGC 1 cut(s) 108
Hin1II CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 2 cut(s) 36, 481
HindII GTYRAC 2 cut(s) 36, 481
HindIII AAGCTT 4 cut(s) 127, 454, 782, 1067
HinfI GANTC 5 cut(s) 163, 489, 763, 903, 976
HpaII CCGG 1 cut(s) 981
HphI GGTGA 2 cut(s) 163, 284
Hpy166II GTNNAC 6 cut(s) 36, 44, 361, 448, 481, 997
Hpy188I TCNGA 4 cut(s) 113, 598, 1016, 1065
Hpy188III TCNNGA 5 cut(s) 160, 584, 848, 896, 907
Hpy8I GTNNAC 6 cut(s) 36, 44, 361, 448, 481, 997
Hpy99I CGWCG 2 cut(s) 113, 143
HpyAV CCTTC 5 cut(s) 15, 292, 370, 404, 595
HpyCH4III ACNGT 2 cut(s) 696, 967
HpyCH4V TGCA 3 cut(s) 427, 476, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 135, 473
HpyF3I CTNAG 4 cut(s) 49, 341, 597, 944
Hsp92II CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 4 cut(s) 277, 286, 580, 586
LmnI GCTCC 3 cut(s) 97, 394, 898
Lsp1109I GCAGC 2 cut(s) 101, 140
LweI GCATC 3 cut(s) 463, 727, 935
MaeI CTAG 5 cut(s) 39, 635, 719, 741, 1059
MaeIII GTNAC 2 cut(s) 684, 967
MalI GATC 4 cut(s) 279, 288, 582, 588
MbiI CCGCTC 1 cut(s) 1005
MboI GATC 4 cut(s) 277, 286, 580, 586
MboII GAAGA 4 cut(s) 46, 537, 815, 826
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 3 cut(s) 275, 960, 1042
MlsI TGGCCA 2 cut(s) 321, 1046
MluCI AATT 3 cut(s) 565, 647, 750
MluNI TGGCCA 2 cut(s) 321, 1046
MmeI TCCRAC 2 cut(s) 91, 210
Mox20I TGGCCA 2 cut(s) 321, 1046
MroXI GAANNNNTTC 1 cut(s) 615
MscI TGGCCA 2 cut(s) 321, 1046
MseI TTAA 3 cut(s) 27, 330, 653
MslI CAYNNNNRTG 2 cut(s) 420, 931
Msp20I TGGCCA 2 cut(s) 321, 1046
MspI CCGG 1 cut(s) 981
MspR9I CCNGG 1 cut(s) 981
MvnI CGCG 2 cut(s) 108, 210
MwoI GCNNNNNNNGC 3 cut(s) 89, 135, 473
NciI CCSGG 1 cut(s) 981
NcoI CCATGG 2 cut(s) 322, 1047
NdeII GATC 4 cut(s) 277, 286, 580, 586
NlaIII CATG 7 cut(s) 82, 163, 326, 674, 684, 1003, 1051
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 967
PagI TCATGA 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 163, 489, 763, 903, 976
PflMI CCANNNNNTGG 1 cut(s) 681
PfoI TCCNGGA 1 cut(s) 979
PkrI GCNGC 2 cut(s) 91, 155
Psp124BI GAGCTC 1 cut(s) 960
PspEI GGTNACC 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 115
PstNI CAGNNNCTG 2 cut(s) 433, 971
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 420, 931
SacI GAGCTC 1 cut(s) 960
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 27, 330, 653
SatI GCNGC 2 cut(s) 90, 154
Sau3AI GATC 4 cut(s) 277, 286, 580, 586
ScrFI CCNGG 1 cut(s) 981
SduI GDGCHC 3 cut(s) 275, 960, 1042
SfaNI GCATC 3 cut(s) 463, 727, 935
SmiMI CAYNNNNRTG 2 cut(s) 420, 931
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 3 cut(s) 565, 647, 750
SsiI CCGC 7 cut(s) 67, 87, 98, 202, 208, 881, 1005
SspMI CTAG 5 cut(s) 39, 635, 719, 741, 1059
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 1 cut(s) 979
StyI CCWWGG 6 cut(s) 9, 216, 322, 390, 776, 1047
TaaI ACNGT 2 cut(s) 696, 967
TaqI TCGA 2 cut(s) 35, 906
TasI AATT 3 cut(s) 565, 647, 750
TfiI GAWTC 5 cut(s) 163, 489, 763, 903, 976
Tru1I TTAA 3 cut(s) 27, 330, 653
Tru9I TTAA 3 cut(s) 27, 330, 653
TscAI CASTG 3 cut(s) 140, 649, 972
TseFI GTSAC 1 cut(s) 967
TseI GCWGC 2 cut(s) 89, 153
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 7 cut(s) 67, 148, 423, 624, 659, 776, 827
TspRI CASTG 3 cut(s) 140, 649, 972
Van91I CCANNNNNTGG 1 cut(s) 681
XapI RAATTY 2 cut(s) 565, 647
XmiI GTMKAC 3 cut(s) 35, 43, 360
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 5 cut(s) 39, 635, 719, 741, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.