Rh7BG080300

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012304
Physical Location & Seq
Forward (+)
5807151 .. 5810027
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG080300.1

Sequence Viewer

Length: 999 bp
ATGGCCTCTGTAGCTCCACCGCCCAAGCGCGTCGGAACCCACAATGGAAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGATAAGTTCTCCAACGCCGAAATCGTCCGCACCCGCGACCCCAAGGTGTTGGAGGGTTTGGACGCTGTGCTTGATGTTGGGGGCGTGTATGACCCGAGCACGGATCGGTACGATCATCACCAGAAGGGGTTTGAGGAGGTTTTTGGCCATGGGTTTAAGACCAAGCTGAGTAGTGCTGGACTGGTTTACAAGCATTTTGGGAAGGAAATAATAGCCAAGGAGCTTCAAGTTGATGAAGGACACCTTGATGTGCAGAGGCTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCGATTGATGCAGTTGACAATGGGATCAATCAGTATGATACAGACCAGCCTCCAAGATATGTGAATAATACACACTTATCTTCAAGGGTCGGGAGGTTGAATTTGGACTGGATAGATCCTGATCAATCATCTGAGAAGGAGAATGAAGCCTTTCAACAAGCAATGGCTCTAGCTGGCAGTGAATTTTTAAGTAGTCTGCGTTTTCATGCCAAATCATGGTTACCAGCACGGTCTATTGTGATGGAGTGTCTCCTAGCAAGATGGAGTATCGATCCTAGTGGAGAAATTATGGTTTTGAATCGGTTTTGTCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAGATGAAGATTGACCCTCCCATCAAATATGTTCTCTATCAGGATGATAGGAGTAAAAGCTGGCGAGTTCAAGCGGTGGCAGTTGCTCCTGATAGATTCGAGAGCCGAAGGCCTCTTGCATCTCAATGGCGAGGGCTTAGAGACGATGAGCTCTCAACAGCGACTGGGATACCCGGATGTGTCTTTGTCCACATGAGCGGGTTTATCGGAGGAAATCAAGCATACGAGGGTGCTCTGGCCATGGCAAAGGCTAGTCTGAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

332

Amino Acids

37.35

Weight (kDa)

5.79

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 11 - 329 4.3e-137 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 603
AccBSI CCGCTC 1 cut(s) 927
AccII CGCG 2 cut(s) 30, 132
AciI CCGC 5 cut(s) 20, 124, 130, 803, 927
AclWI GGATC 4 cut(s) 207, 419, 497, 653
AcoI YGGCCR 2 cut(s) 241, 966
AcsI RAATTY 2 cut(s) 487, 569
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 196, 603
AgsI TTSAA 8 cut(s) 323, 471, 487, 542, 685, 719, 725, 800
Alw21I GWGCWC 3 cut(s) 197, 882, 964
Alw26I GTCTC 2 cut(s) 641, 864
AlwI GGATC 4 cut(s) 207, 419, 497, 653
AlwNI CAGNNNCTG 2 cut(s) 355, 893
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 4 cut(s) 3, 241, 839, 966
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 2 cut(s) 487, 569
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 2 cut(s) 85, 206
AvaI CYCGRG 1 cut(s) 190
BalI TGGCCA 2 cut(s) 243, 968
BanII GRGCYC 1 cut(s) 882
Bbv12I GWGCWC 3 cut(s) 197, 882, 964
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 622, 642, 758
BciVI GTATCC 1 cut(s) 891
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 2 cut(s) 641, 864
BfaI CTAG 4 cut(s) 557, 641, 663, 981
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 891
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 2 cut(s) 385, 857
BmuI ACTGGG 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 903
Bsa29I ATCGAT 1 cut(s) 657
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 6 cut(s) 70, 138, 244, 312, 698, 969
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 603
Bse1I ACTGG 3 cut(s) 282, 500, 898
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 507
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 6 cut(s) 70, 138, 244, 312, 698, 969
BseGI GGATG 2 cut(s) 778, 911
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 196, 603
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 254, 510
BseNI ACTGG 3 cut(s) 282, 500, 898
BseRI GAGGAG 2 cut(s) 245, 743
BseXI GCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 2 cut(s) 30, 132
BshFI GGCC 4 cut(s) 5, 243, 841, 968
BshVI ATCGAT 1 cut(s) 657
BsiHKAI GWGCWC 3 cut(s) 197, 882, 964
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 903
BslI CCNNNNNNNGG 2 cut(s) 196, 603
BsmAI GTCTC 2 cut(s) 641, 864
BsmBI CGTCTC 1 cut(s) 864
BsnI GGCC 4 cut(s) 5, 243, 841, 968
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 197, 882, 964
Bsp143I GATC 6 cut(s) 199, 208, 411, 502, 508, 658
Bsp19I CCATGG 2 cut(s) 244, 969
BspACI CCGC 5 cut(s) 20, 124, 130, 803, 927
BspANI GGCC 4 cut(s) 5, 243, 841, 968
BspCNI CTCAG 2 cut(s) 255, 511
BspDI ATCGAT 1 cut(s) 657
BspFNI CGCG 2 cut(s) 30, 132
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 4 cut(s) 207, 419, 497, 653
BsrBI CCGCTC 1 cut(s) 927
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 3 cut(s) 282, 500, 898
BssECI CCNNGG 6 cut(s) 70, 138, 244, 312, 698, 969
BssMI GATC 6 cut(s) 199, 208, 411, 502, 508, 658
BssT1I CCWWGG 5 cut(s) 138, 244, 312, 698, 969
Bst4CI ACNGT 1 cut(s) 618
Bst6I CTCTTC 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 562, 791
BstDEI CTNAG 3 cut(s) 263, 519, 866
BstDSI CCRYGG 2 cut(s) 244, 969
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 2 cut(s) 778, 911
BstFNI CGCG 2 cut(s) 30, 132
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 6 cut(s) 202, 211, 414, 505, 511, 661
BstMAI GTCTC 2 cut(s) 641, 864
BstMBI GATC 6 cut(s) 199, 208, 411, 502, 508, 658
BstMWI GCNNNNNNNGC 3 cut(s) 11, 57, 395
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 2 cut(s) 30, 132
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 502
Bsu15I ATCGAT 1 cut(s) 657
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 4 cut(s) 5, 243, 841, 968
BsuTUI ATCGAT 1 cut(s) 657
BtgI CCRYGG 2 cut(s) 244, 969
BtsCI GGATG 2 cut(s) 778, 911
BtsI GCAGTG 2 cut(s) 55, 571
BtsIMutI CAGTG 2 cut(s) 55, 571
Cac8I GCNNGC 2 cut(s) 562, 791
CaiI CAGNNNCTG 2 cut(s) 355, 893
CciI TCATGA 1 cut(s) 81
CfoI GCGC 1 cut(s) 30
ClaI ATCGAT 1 cut(s) 657
CseI GACGC 2 cut(s) 19, 167
Csp6I GTAC 1 cut(s) 205
CviAII CATG 6 cut(s) 82, 245, 593, 603, 922, 970
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 263, 519, 866
DpnI GATC 6 cut(s) 201, 210, 413, 504, 510, 660
DpnII GATC 6 cut(s) 199, 208, 411, 502, 508, 658
EaeI YGGCCR 2 cut(s) 241, 966
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 5 cut(s) 138, 244, 312, 698, 969
Eco147I AGGCCT 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 882
Eco53kI GAGCTC 1 cut(s) 880
Eco88I CYCGRG 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 880
EcoO65I GGTNACC 1 cut(s) 606
EcoT14I CCWWGG 5 cut(s) 138, 244, 312, 698, 969
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 5 cut(s) 138, 244, 312, 698, 969
Esp3I CGTCTC 1 cut(s) 864
FaeI CATG 6 cut(s) 85, 248, 596, 606, 925, 973
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 6 cut(s) 81, 244, 592, 602, 921, 969
FauI CCCGC 2 cut(s) 137, 920
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 785, 918
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 4 cut(s) 557, 641, 663, 981
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 4 cut(s) 5, 243, 841, 968
HapII CCGG 1 cut(s) 903
HgaI GACGC 2 cut(s) 19, 167
HhaI GCGC 1 cut(s) 30
Hin1II CATG 6 cut(s) 85, 248, 596, 606, 925, 973
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 4 cut(s) 49, 376, 704, 989
HinfI GANTC 3 cut(s) 85, 685, 825
HpaII CCGG 1 cut(s) 903
HphI GGTGA 2 cut(s) 85, 206
Hpy166II GTNNAC 4 cut(s) 283, 370, 403, 919
Hpy188I TCNGA 4 cut(s) 35, 520, 938, 987
Hpy188III TCNNGA 6 cut(s) 82, 478, 506, 770, 818, 829
Hpy8I GTNNAC 4 cut(s) 283, 370, 403, 919
Hpy99I CGWCG 2 cut(s) 35, 65
HpyAV CCTTC 5 cut(s) 214, 292, 326, 517, 831
HpyCH4III ACNGT 1 cut(s) 618
HpyCH4V TGCA 3 cut(s) 349, 398, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 57, 395
HpyF3I CTNAG 3 cut(s) 263, 519, 866
Hsp92II CATG 6 cut(s) 85, 248, 596, 606, 925, 973
HspAI GCGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 6 cut(s) 199, 208, 411, 502, 508, 658
LmnI GCTCC 3 cut(s) 19, 316, 820
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 385, 857
MaeI CTAG 4 cut(s) 557, 641, 663, 981
MaeIII GTNAC 1 cut(s) 606
MalI GATC 6 cut(s) 201, 210, 413, 504, 510, 660
MbiI CCGCTC 1 cut(s) 927
MboI GATC 6 cut(s) 199, 208, 411, 502, 508, 658
MboII GAAGA 3 cut(s) 459, 737, 748
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 197, 882, 964
MlsI TGGCCA 2 cut(s) 243, 968
MluCI AATT 3 cut(s) 487, 569, 672
MluNI TGGCCA 2 cut(s) 243, 968
MmeI TCCRAC 3 cut(s) 13, 126, 132
Mox20I TGGCCA 2 cut(s) 243, 968
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 2 cut(s) 243, 968
MseI TTAA 2 cut(s) 252, 575
MslI CAYNNNNRTG 2 cut(s) 342, 853
Msp20I TGGCCA 2 cut(s) 243, 968
MspI CCGG 1 cut(s) 903
MspR9I CCNGG 1 cut(s) 903
MvnI CGCG 2 cut(s) 30, 132
MwoI GCNNNNNNNGC 3 cut(s) 11, 57, 395
NciI CCSGG 1 cut(s) 903
NcoI CCATGG 2 cut(s) 244, 969
NdeII GATC 6 cut(s) 199, 208, 411, 502, 508, 658
NlaIII CATG 6 cut(s) 85, 248, 596, 606, 925, 973
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 51
PagI TCATGA 1 cut(s) 81
PceI AGGCCT 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 85, 685, 825
PflMI CCANNNNNTGG 1 cut(s) 603
PkrI GCNGC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 882
PspEI GGTNACC 1 cut(s) 606
PspN4I GGNNCC 1 cut(s) 37
PstNI CAGNNNCTG 2 cut(s) 355, 893
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 2 cut(s) 342, 853
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 252, 575
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 6 cut(s) 199, 208, 411, 502, 508, 658
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 3 cut(s) 197, 882, 964
SfaNI GCATC 2 cut(s) 385, 857
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 2 cut(s) 342, 853
Sse9I AATT 3 cut(s) 487, 569, 672
SseBI AGGCCT 1 cut(s) 841
SsiI CCGC 5 cut(s) 20, 124, 130, 803, 927
SspMI CTAG 4 cut(s) 557, 641, 663, 981
SstI GAGCTC 1 cut(s) 882
StuI AGGCCT 1 cut(s) 841
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 5 cut(s) 138, 244, 312, 698, 969
TaaI ACNGT 1 cut(s) 618
TaqI TCGA 2 cut(s) 657, 828
TasI AATT 3 cut(s) 487, 569, 672
TfiI GAWTC 3 cut(s) 85, 685, 825
Tru1I TTAA 2 cut(s) 252, 575
Tru9I TTAA 2 cut(s) 252, 575
TscAI CASTG 2 cut(s) 62, 571
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 7 cut(s) 70, 345, 546, 581, 698, 749, 984
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 62, 571
Van91I CCANNNNNTGG 1 cut(s) 603
XapI RAATTY 2 cut(s) 487, 569
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 4 cut(s) 557, 641, 663, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.