Prupe.5G128600_v2.0.a1

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012304
Physical Location & Seq
Reverse (-)
12493542 .. 12495852
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G128600.1

Sequence Viewer

Length: 1089 bp
ATGCTTCCGCTAGTAGGCAGAGGGTTTAAGCACACGCTACCATTCGTCTTCCCCAGCCACCACCATCACCTGCGCCTTCACCTCTCTCGCTCTCTCATGGCTACCGCTACTTCAGCTAAGCGAGTTGGCACTCACAATGGCAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGACAAGTTCTCCAACGCCGAAATCGTTCGCACCCGTGACCCCCAGGTTTTGGAGGGTCTGGATGCTGTGCTTGATGTTGGGGGTGTATATGATCCTAGTAGGGATCGGTATGATCATCACCAGAAGGGCTTCGAGGAGGTGTTTGGCCATGGGTTTAAGACTAAGCTGAGTAGTGCTGGTCTGGTTTACAAGCATTTTGGGAAGGAAATAATAGCCAAGGAGCTTCAAGTTGATGAAGGCCACCTAGATGTGCATCGGTTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCAATTGATGCTGTTGACAATGGGATCAATCAGTACGATACGGAACAGCCTCCAAGATATGTGAATAACACACACTTGTCTTCAAGGGTAGGCAAGTTGAATTTGGATTGGATAGATCCTGATCAATCACCTGAGAAGGAGAATGAAGCCTTTCGTCGAGCCATGGAACTGGCTGGCAGTGAGTTTTTAAGCAGTGTTCGTTTTCATGCAAAATCATGGTTACCAGCACGGTCTATTGTAATGGAGTGTCTCTTAGCAAGATGGAGTGTTGATCCTAGTGGAGAAATCATGGTTTTGACTCGATTCTGCCCTTGGAAGCTTCATTTATTTGAACTTGAAGAAGAGATGAAGATTGACCCTCCCATAAAATATGTTCTCTATCAGGATGATAGGAGCAAACACTGGCGAGTTCAAGCGGTGGCAGTAGCTCCTGATAGATTTGAGAGCCGAAAGCCTCTAGCATTGCAATGGCGAGGACTTAGGGATGAGGAGCTCTCGAAGGAGGCTGCGATCCCCGGATGTGTTTTTGTCCACATGAGTGGGTTTATTGGAGGAAATCAAACATATGAGGGCGCTCTGGCCATGGCAAAAGCTAGTTTGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

363

Amino Acids

41.19

Weight (kDa)

6.68

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 238
AciI CCGC 3 cut(s) 8, 105, 896
AclWI GGATC 6 cut(s) 275, 300, 512, 590, 746, 985
AcoI YGGCCR 2 cut(s) 334, 1059
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 14, 238
AgsI TTSAA 7 cut(s) 416, 564, 580, 812, 818, 893, 1081
AjnI CCWGG 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 1017
Alw21I GWGCWC 1 cut(s) 975
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 6 cut(s) 275, 300, 512, 590, 746, 985
AoxI GGCC 3 cut(s) 334, 427, 1059
ApeKI GCWGC 3 cut(s) 141, 168, 986
ApoI RAATTY 1 cut(s) 580
Asp700I GAANNNNTTC 3 cut(s) 213, 317, 630
AspLEI GCGC 2 cut(s) 75, 1055
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 5 cut(s) 59, 71, 178, 299, 600
BalI TGGCCA 2 cut(s) 336, 1061
BanII GRGCYC 1 cut(s) 975
BbsI GAAGAC 2 cut(s) 40, 552
Bbv12I GWGCWC 1 cut(s) 975
BbvI GCAGC 3 cut(s) 153, 155, 973
BccI CCATC 2 cut(s) 72, 735
BciT130I CCWGG 1 cut(s) 233
BclI TGATCA 2 cut(s) 301, 601
BcnI CCSGG 1 cut(s) 996
BcoDI GTCTC 1 cut(s) 734
BfaI CTAG 6 cut(s) 11, 285, 434, 756, 938, 1074
BfoI RGCGCY 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 3 cut(s) 142, 169, 987
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 3 cut(s) 143, 170, 988
Bme1390I CCNGG 2 cut(s) 233, 996
BmrFI CCNGG 2 cut(s) 233, 996
BmsI GCATC 3 cut(s) 241, 451, 478
BpiI GAAGAC 2 cut(s) 40, 552
BplI GAGNNNNNCTC 2 cut(s) 959, 991
Bpu1102I GCTNAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 996
BsaBI GATNNNNATC 2 cut(s) 441, 600
BsaJI CCNNGG 8 cut(s) 163, 231, 337, 405, 642, 791, 994, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 238
Bse1I ACTGG 2 cut(s) 654, 887
Bse3DI GCAATG 2 cut(s) 941, 953
Bse8I GATNNNNATC 2 cut(s) 441, 600
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 8 cut(s) 163, 231, 337, 405, 642, 791, 994, 1062
BseGI GGATG 4 cut(s) 256, 871, 970, 1004
BseJI GATNNNNATC 2 cut(s) 441, 600
BseLI CCNNNNNNNGG 2 cut(s) 14, 238
BseMI GCAATG 2 cut(s) 941, 953
BseMII CTCAG 2 cut(s) 347, 603
BseNI ACTGG 2 cut(s) 654, 887
BseRI GAGGAG 2 cut(s) 338, 983
BseXI GCAGC 3 cut(s) 153, 155, 973
BseYI CCCAGC 1 cut(s) 53
BshFI GGCC 3 cut(s) 336, 429, 1061
BsiHKAI GWGCWC 1 cut(s) 975
BsiSI CCGG 1 cut(s) 996
BslI CCNNNNNNNGG 2 cut(s) 14, 238
BsmAI GTCTC 1 cut(s) 734
BsnI GGCC 3 cut(s) 336, 429, 1061
Bsp1286I GDGCHC 1 cut(s) 975
Bsp143I GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
Bsp1720I GCTNAGC 1 cut(s) 117
Bsp19I CCATGG 3 cut(s) 337, 642, 1062
BspACI CCGC 3 cut(s) 8, 105, 896
BspANI GGCC 3 cut(s) 336, 429, 1061
BspCNI CTCAG 2 cut(s) 348, 604
BspHI TCATGA 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 6 cut(s) 275, 300, 512, 590, 746, 985
BsrDI GCAATG 2 cut(s) 941, 953
BsrI ACTGG 2 cut(s) 654, 887
BssECI CCNNGG 8 cut(s) 163, 231, 337, 405, 642, 791, 994, 1062
BssMI GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
BssT1I CCWWGG 5 cut(s) 337, 405, 642, 791, 1062
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 711
Bst6I CTCTTC 1 cut(s) 816
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 6 cut(s) 117, 351, 356, 612, 733, 959
BstDSI CCRYGG 3 cut(s) 337, 642, 1062
BstEII GGTNACC 1 cut(s) 699
BstF5I GGATG 4 cut(s) 256, 871, 970, 1004
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 75, 1055
BstKTI GATC 8 cut(s) 283, 295, 304, 507, 598, 604, 754, 993
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
BstMWI GCNNNNNNNGC 3 cut(s) 113, 150, 488
BstNI CCWGG 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 231, 994
BstV1I GCAGC 3 cut(s) 153, 155, 973
BstV2I GAAGAC 2 cut(s) 40, 552
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 2 cut(s) 649, 1019
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 3 cut(s) 336, 429, 1061
BtgI CCRYGG 3 cut(s) 337, 642, 1062
BtsCI GGATG 4 cut(s) 256, 871, 970, 1004
BtsI GCAGTG 3 cut(s) 148, 664, 679
BtsIMutI CAGTG 4 cut(s) 148, 664, 679, 880
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 655
CciI TCATGA 1 cut(s) 174
CfoI GCGC 2 cut(s) 75, 1055
Csp6I GTAC 1 cut(s) 514
CviAII CATG 9 cut(s) 97, 175, 338, 643, 686, 696, 769, 1015, 1063
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 6 cut(s) 117, 351, 356, 612, 733, 959
DpnI GATC 8 cut(s) 282, 294, 303, 506, 597, 603, 753, 992
DpnII GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
EaeI YGGCCR 2 cut(s) 334, 1059
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
Ecl136II GAGCTC 1 cut(s) 973
Eco130I CCWWGG 5 cut(s) 337, 405, 642, 791, 1062
Eco24I GRGCYC 1 cut(s) 975
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 699
EcoICRI GAGCTC 1 cut(s) 973
EcoO65I GGTNACC 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 5 cut(s) 337, 405, 642, 791, 1062
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 5 cut(s) 337, 405, 642, 791, 1062
FaeI CATG 9 cut(s) 100, 178, 341, 646, 689, 699, 772, 1018, 1066
FatI CATG 9 cut(s) 96, 174, 337, 642, 685, 695, 768, 1014, 1062
FauNDI CATATG 1 cut(s) 1045
FbaI TGATCA 2 cut(s) 301, 601
Fnu4HI GCNGC 3 cut(s) 142, 169, 987
FokI GGATG 4 cut(s) 263, 878, 977, 1011
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 3 cut(s) 142, 169, 987
FspBI CTAG 6 cut(s) 11, 285, 434, 756, 938, 1074
GlaI GCGC 2 cut(s) 74, 1054
GluI GCNGC 3 cut(s) 142, 169, 987
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 3 cut(s) 336, 429, 1061
HapII CCGG 1 cut(s) 996
HhaI GCGC 2 cut(s) 75, 1055
Hin1II CATG 9 cut(s) 100, 178, 341, 646, 689, 699, 772, 1018, 1066
Hin6I GCGC 2 cut(s) 73, 1053
HinP1I GCGC 2 cut(s) 73, 1053
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 3 cut(s) 469, 797, 1082
HinfI GANTC 3 cut(s) 178, 778, 783
HpaII CCGG 1 cut(s) 996
HphI GGTGA 5 cut(s) 59, 71, 178, 299, 600
Hpy166II GTNNAC 4 cut(s) 376, 463, 496, 1012
Hpy188III TCNNGA 6 cut(s) 175, 248, 599, 863, 911, 976
Hpy8I GTNNAC 4 cut(s) 376, 463, 496, 1012
Hpy99I CGWCG 2 cut(s) 158, 639
HpyAV CCTTC 6 cut(s) 86, 307, 385, 419, 610, 973
HpyCH4III ACNGT 1 cut(s) 711
HpyCH4V TGCA 3 cut(s) 442, 689, 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 150, 488
HpyF3I CTNAG 6 cut(s) 117, 351, 356, 612, 733, 959
Hsp92II CATG 9 cut(s) 100, 178, 341, 646, 689, 699, 772, 1018, 1066
HspAI GCGC 2 cut(s) 73, 1053
Ksp22I TGATCA 2 cut(s) 301, 601
Kzo9I GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
LmnI GCTCC 4 cut(s) 409, 873, 913, 970
Lsp1109I GCAGC 3 cut(s) 153, 155, 973
LweI GCATC 3 cut(s) 241, 451, 478
MaeI CTAG 6 cut(s) 11, 285, 434, 756, 938, 1074
MaeIII GTNAC 2 cut(s) 224, 699
MalI GATC 8 cut(s) 282, 294, 303, 506, 597, 603, 753, 992
MboI GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
MboII GAAGA 5 cut(s) 40, 552, 830, 833, 841
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 975
MlsI TGGCCA 2 cut(s) 336, 1061
MluCI AATT 2 cut(s) 483, 580
MluNI TGGCCA 2 cut(s) 336, 1061
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 1 cut(s) 225
Mox20I TGGCCA 2 cut(s) 336, 1061
MroXI GAANNNNTTC 3 cut(s) 213, 317, 630
MscI TGGCCA 2 cut(s) 336, 1061
MseI TTAA 3 cut(s) 27, 345, 668
MslI CAYNNNNRTG 3 cut(s) 435, 946, 1017
Msp20I TGGCCA 2 cut(s) 336, 1061
MspI CCGG 1 cut(s) 996
MspR9I CCNGG 2 cut(s) 233, 996
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 113, 150, 488
NciI CCSGG 1 cut(s) 996
NcoI CCATGG 3 cut(s) 337, 642, 1062
NdeI CATATG 1 cut(s) 1045
NdeII GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
NlaIII CATG 9 cut(s) 100, 178, 341, 646, 689, 699, 772, 1018, 1066
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 1017
PagI TCATGA 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 3 cut(s) 213, 317, 630
PfeI GAWTC 2 cut(s) 178, 783
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 3 cut(s) 143, 170, 988
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Psp124BI GAGCTC 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 699
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 231
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 3 cut(s) 435, 946, 1017
SacI GAGCTC 1 cut(s) 975
SaqAI TTAA 3 cut(s) 27, 345, 668
SatI GCNGC 3 cut(s) 142, 169, 987
Sau3AI GATC 8 cut(s) 280, 292, 301, 504, 595, 601, 751, 990
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 2 cut(s) 233, 996
SduI GDGCHC 1 cut(s) 975
SfaNI GCATC 3 cut(s) 241, 451, 478
SmiMI CAYNNNNRTG 3 cut(s) 435, 946, 1017
Sse9I AATT 2 cut(s) 483, 580
SsiI CCGC 3 cut(s) 8, 105, 896
SspMI CTAG 6 cut(s) 11, 285, 434, 756, 938, 1074
SstI GAGCTC 1 cut(s) 975
StyD4I CCNGG 2 cut(s) 231, 994
StyI CCWWGG 5 cut(s) 337, 405, 642, 791, 1062
TaaI ACNGT 1 cut(s) 711
TaqI TCGA 4 cut(s) 321, 637, 781, 977
TasI AATT 2 cut(s) 483, 580
TfiI GAWTC 2 cut(s) 178, 783
Tru1I TTAA 3 cut(s) 27, 345, 668
Tru9I TTAA 3 cut(s) 27, 345, 668
TscAI CASTG 4 cut(s) 155, 664, 679, 887
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 3 cut(s) 141, 168, 986
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 6 cut(s) 163, 438, 639, 674, 791, 842
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 4 cut(s) 155, 664, 679, 887
Van91I CCANNNNNTGG 1 cut(s) 238
XapI RAATTY 1 cut(s) 580
XmnI GAANNNNTTC 3 cut(s) 213, 317, 630
XspI CTAG 6 cut(s) 11, 285, 434, 756, 938, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.