RchiOBHm_Chr7g0186791

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012304
Physical Location & Seq
Reverse (-)
6589526 .. 6592473
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16673

Sequence Viewer

Length: 1074 bp
ATGCTTCCGTTGGTAAGCAGAAGGTTTAAGCTGTCGACTAGTGTACCCTTGGTCTTGTTCCACCGCCCACGCTCCATGGCCTCCGTAGCTCCACCGCCCAAGCGCGTCGGCACCCACAATGGAAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGATAAGTTCTCCAACGCCGAAATCGTCCGCACCCGCGACCCCAAGGTCTTGGAGGGTTTGGACGCTGTGCTTGATGTTGGGGGTGTGTATCACCCGAGCTCGGATCGGTACGATCATCACCAGAAGGGGTTTGAGGAGGTTTTTGGCCATGGGTTTAAGACCAAGCTGAGTAGTGCTGGACTGGTCTACAAGCATTTTGGGAAGGAAATAATAGCCAAGGAGCTTCAAGTTGATGAAGGACACCTTGATGTGCAGAGGCTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCGATTGATGCAGTTGACAATGGGATCAATCAGTATGATACCGACCAGCCTCCAAGATATGTGAATAATACACACTTATCTTCAAGGGTGGGGAGGTTGAATTTGGACTGGATAGATCCTGATCAATCATCTGAGAAGGAGAATGAAGCCTTTCAACAAGCAATGGCTCTAGCTGGCAGTGAATTTTTAAGTAGTCTGCGTTTTCATGCCAAATCATGGTTACCAGCACGGTCTATTGTGATGGAGTGTCTCCTAGCAAGATGGAGTATTGATCCTAGTGGAGAAATTATGGTTTTGAATCGGTTTTGTCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAGATGAAGATTGACCCGCCCATCAAATATGTTCTCTATCAGGATGATAGGAGTAAAAGCTGGCGAGTTCAAGCGGTGGCAGTTGCTCCTGATAGATTCGAGAGCCGAAAGCCTCTTGCATCTCAGTGGCGAGGGCTTAGAGACGATGAGCTCTCAACAGCGACTGGGATTCCCGGATGTGTCTTTGTCCACATGAGCGGGTTTATCGGAGGAAATCAAACATATGAGGGTGCTCTGGCCATGGCAAAGGCTAGTCTGAAGCTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

357

Amino Acids

40.28

Weight (kDa)

6.68

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 36 - 354 5.2e-137 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 1002
AccI GTMKAC 2 cut(s) 35, 357
AccII CGCG 2 cut(s) 105, 207
AciI CCGC 7 cut(s) 64, 95, 199, 205, 821, 878, 1002
AclWI GGATC 4 cut(s) 282, 494, 572, 728
AcoI YGGCCR 2 cut(s) 316, 1041
AcsI RAATTY 2 cut(s) 562, 644
AfaI GTAC 2 cut(s) 45, 281
AfiI CCNNNNNNNGG 2 cut(s) 271, 678
AgsI TTSAA 8 cut(s) 398, 546, 562, 617, 760, 794, 800, 875
AhlI ACTAGT 1 cut(s) 38
Alw21I GWGCWC 3 cut(s) 272, 957, 1039
Alw26I GTCTC 2 cut(s) 716, 939
AlwI GGATC 4 cut(s) 282, 494, 572, 728
AlwNI CAGNNNCTG 2 cut(s) 430, 968
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 3 cut(s) 78, 316, 1041
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 562, 644
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 3 cut(s) 160, 254, 281
AvaI CYCGRG 1 cut(s) 265
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BalI TGGCCA 2 cut(s) 318, 1043
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 2 cut(s) 272, 957
Bbv12I GWGCWC 3 cut(s) 272, 957, 1039
BbvI GCAGC 1 cut(s) 137
BccI CCATC 3 cut(s) 697, 717, 833
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 2 cut(s) 716, 939
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 5 cut(s) 39, 632, 716, 738, 1056
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 978
BmeT110I CYCGRG 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 978
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 2 cut(s) 460, 932
BmuI ACTGGG 1 cut(s) 978
BpuMI CCSGG 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 8 cut(s) 48, 75, 145, 213, 319, 387, 773, 1044
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 678
Bse1I ACTGG 3 cut(s) 357, 575, 973
Bse3DI GCAATG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 582
BseDI CCNNGG 8 cut(s) 48, 75, 145, 213, 319, 387, 773, 1044
BseGI GGATG 2 cut(s) 853, 986
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 2 cut(s) 271, 678
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 3 cut(s) 329, 585, 941
BseNI ACTGG 3 cut(s) 357, 575, 973
BseRI GAGGAG 2 cut(s) 320, 818
BseXI GCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 2 cut(s) 105, 207
BshFI GGCC 3 cut(s) 80, 318, 1043
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 3 cut(s) 272, 957, 1039
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 978
BslI CCNNNNNNNGG 2 cut(s) 271, 678
BsmAI GTCTC 2 cut(s) 716, 939
BsmBI CGTCTC 1 cut(s) 939
BsnI GGCC 3 cut(s) 80, 318, 1043
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 272, 957, 1039
Bsp143I GATC 6 cut(s) 274, 283, 486, 577, 583, 733
Bsp19I CCATGG 3 cut(s) 75, 319, 1044
BspACI CCGC 7 cut(s) 64, 95, 199, 205, 821, 878, 1002
BspANI GGCC 3 cut(s) 80, 318, 1043
BspCNI CTCAG 3 cut(s) 330, 586, 940
BspFNI CGCG 2 cut(s) 105, 207
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 4 cut(s) 282, 494, 572, 728
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 1002
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 3 cut(s) 357, 575, 973
BssECI CCNNGG 8 cut(s) 48, 75, 145, 213, 319, 387, 773, 1044
BssMI GATC 6 cut(s) 274, 283, 486, 577, 583, 733
BssT1I CCWWGG 7 cut(s) 48, 75, 213, 319, 387, 773, 1044
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 1 cut(s) 795
BstC8I GCNNGC 2 cut(s) 637, 866
BstDEI CTNAG 4 cut(s) 338, 594, 927, 941
BstDSI CCRYGG 3 cut(s) 75, 319, 1044
BstEII GGTNACC 1 cut(s) 681
BstF5I GGATG 2 cut(s) 853, 986
BstFNI CGCG 2 cut(s) 105, 207
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 6 cut(s) 277, 286, 489, 580, 586, 736
BstMAI GTCTC 2 cut(s) 716, 939
BstMBI GATC 6 cut(s) 274, 283, 486, 577, 583, 733
BstMWI GCNNNNNNNGC 3 cut(s) 86, 132, 470
BstPI GGTNACC 1 cut(s) 681
BstSCI CCNGG 1 cut(s) 976
BstUI CGCG 2 cut(s) 105, 207
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 577
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 3 cut(s) 80, 318, 1043
BtgI CCRYGG 3 cut(s) 75, 319, 1044
BtsCI GGATG 2 cut(s) 853, 986
BtsI GCAGTG 2 cut(s) 130, 646
BtsIMutI CAGTG 3 cut(s) 130, 646, 935
Cac8I GCNNGC 2 cut(s) 637, 866
CaiI CAGNNNCTG 2 cut(s) 430, 968
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 105
CseI GACGC 2 cut(s) 94, 242
Csp6I GTAC 2 cut(s) 44, 280
CviAII CATG 7 cut(s) 76, 157, 320, 668, 678, 997, 1045
CviQI GTAC 2 cut(s) 44, 280
DdeI CTNAG 4 cut(s) 338, 594, 927, 941
DpnI GATC 6 cut(s) 276, 285, 488, 579, 585, 735
DpnII GATC 6 cut(s) 274, 283, 486, 577, 583, 733
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 2 cut(s) 316, 1041
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Ecl136II GAGCTC 2 cut(s) 270, 955
Eco130I CCWWGG 7 cut(s) 48, 75, 213, 319, 387, 773, 1044
Eco24I GRGCYC 2 cut(s) 272, 957
Eco53kI GAGCTC 2 cut(s) 270, 955
Eco88I CYCGRG 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 681
EcoICRI GAGCTC 2 cut(s) 270, 955
EcoO65I GGTNACC 1 cut(s) 681
EcoT14I CCWWGG 7 cut(s) 48, 75, 213, 319, 387, 773, 1044
EcoT38I GRGCYC 2 cut(s) 272, 957
ErhI CCWWGG 7 cut(s) 48, 75, 213, 319, 387, 773, 1044
Esp3I CGTCTC 1 cut(s) 939
FaeI CATG 7 cut(s) 79, 160, 323, 671, 681, 1000, 1048
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 7 cut(s) 75, 156, 319, 667, 677, 996, 1044
FauI CCCGC 3 cut(s) 212, 828, 995
FauNDI CATATG 1 cut(s) 1027
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 2 cut(s) 35, 357
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 2 cut(s) 860, 993
FriOI GRGCYC 2 cut(s) 272, 957
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 5 cut(s) 39, 632, 716, 738, 1056
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 3 cut(s) 80, 318, 1043
HapII CCGG 1 cut(s) 978
HgaI GACGC 2 cut(s) 94, 242
HhaI GCGC 1 cut(s) 105
Hin1II CATG 7 cut(s) 79, 160, 323, 671, 681, 1000, 1048
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 36, 478
HindII GTYRAC 2 cut(s) 36, 478
HindIII AAGCTT 4 cut(s) 124, 451, 779, 1064
HinfI GANTC 4 cut(s) 160, 760, 900, 973
HpaII CCGG 1 cut(s) 978
HphI GGTGA 3 cut(s) 160, 254, 281
Hpy166II GTNNAC 6 cut(s) 36, 44, 358, 445, 478, 994
Hpy188I TCNGA 4 cut(s) 274, 595, 1013, 1062
Hpy188III TCNNGA 5 cut(s) 157, 581, 845, 893, 904
Hpy8I GTNNAC 6 cut(s) 36, 44, 358, 445, 478, 994
Hpy99I CGWCG 2 cut(s) 110, 140
HpyAV CCTTC 5 cut(s) 15, 289, 367, 401, 592
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4V TGCA 3 cut(s) 424, 473, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 132, 470
HpyF3I CTNAG 4 cut(s) 338, 594, 927, 941
Hsp92II CATG 7 cut(s) 79, 160, 323, 671, 681, 1000, 1048
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 6 cut(s) 274, 283, 486, 577, 583, 733
LmnI GCTCC 4 cut(s) 77, 94, 391, 895
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 460, 932
MaeI CTAG 5 cut(s) 39, 632, 716, 738, 1056
MaeIII GTNAC 1 cut(s) 681
MalI GATC 6 cut(s) 276, 285, 488, 579, 585, 735
MbiI CCGCTC 1 cut(s) 1002
MboI GATC 6 cut(s) 274, 283, 486, 577, 583, 733
MboII GAAGA 3 cut(s) 534, 812, 823
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 3 cut(s) 272, 957, 1039
MlsI TGGCCA 2 cut(s) 318, 1043
MluCI AATT 3 cut(s) 562, 644, 747
MluNI TGGCCA 2 cut(s) 318, 1043
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 2 cut(s) 318, 1043
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 2 cut(s) 318, 1043
MseI TTAA 3 cut(s) 27, 327, 650
MslI CAYNNNNRTG 2 cut(s) 417, 928
Msp20I TGGCCA 2 cut(s) 318, 1043
MspI CCGG 1 cut(s) 978
MspR9I CCNGG 1 cut(s) 978
MvnI CGCG 2 cut(s) 105, 207
MwoI GCNNNNNNNGC 3 cut(s) 86, 132, 470
NciI CCSGG 1 cut(s) 978
NcoI CCATGG 3 cut(s) 75, 319, 1044
NdeI CATATG 1 cut(s) 1027
NdeII GATC 6 cut(s) 274, 283, 486, 577, 583, 733
NlaIII CATG 7 cut(s) 79, 160, 323, 671, 681, 1000, 1048
NlaIV GGNNCC 1 cut(s) 112
NmeAIII GCCGAG 1 cut(s) 126
PagI TCATGA 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 160, 760, 900, 973
PflMI CCANNNNNTGG 1 cut(s) 678
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 1 cut(s) 152
Psp124BI GAGCTC 2 cut(s) 272, 957
PspEI GGTNACC 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 112
PstNI CAGNNNCTG 2 cut(s) 430, 968
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 2 cut(s) 45, 281
RsaNI GTAC 2 cut(s) 44, 280
RseI CAYNNNNRTG 2 cut(s) 417, 928
SacI GAGCTC 2 cut(s) 272, 957
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 27, 327, 650
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 6 cut(s) 274, 283, 486, 577, 583, 733
ScrFI CCNGG 1 cut(s) 978
SduI GDGCHC 3 cut(s) 272, 957, 1039
SfaNI GCATC 2 cut(s) 460, 932
SmiMI CAYNNNNRTG 2 cut(s) 417, 928
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 3 cut(s) 562, 644, 747
SsiI CCGC 7 cut(s) 64, 95, 199, 205, 821, 878, 1002
SspMI CTAG 5 cut(s) 39, 632, 716, 738, 1056
SstI GAGCTC 2 cut(s) 272, 957
StyD4I CCNGG 1 cut(s) 976
StyI CCWWGG 7 cut(s) 48, 75, 213, 319, 387, 773, 1044
TaaI ACNGT 1 cut(s) 693
TaqI TCGA 2 cut(s) 35, 903
TasI AATT 3 cut(s) 562, 644, 747
TfiI GAWTC 4 cut(s) 160, 760, 900, 973
Tru1I TTAA 3 cut(s) 27, 327, 650
Tru9I TTAA 3 cut(s) 27, 327, 650
TscAI CASTG 3 cut(s) 137, 646, 935
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 6 cut(s) 145, 420, 621, 656, 773, 824
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 3 cut(s) 137, 646, 935
Van91I CCANNNNNTGG 1 cut(s) 678
XapI RAATTY 2 cut(s) 562, 644
XmiI GTMKAC 2 cut(s) 35, 357
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 5 cut(s) 39, 632, 716, 738, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.