FvH4_5g11020

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012304
Physical Location & Seq
Forward (+)
6225252 .. 6227987
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11020.t1

Sequence Viewer

Length: 1086 bp
ATGCTTCCTCTAGTTTGCAGAAGGTTTAAGCTATCGACTACTACTCTACCCTCAGTCTTCTTCCACACCCACCGCCGCCGACGCTTCATGGCATCCGTAGCTCCACCGCCCAAGCGCGTCGGCACCCACAATGGAAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCTCTAAGTTCTCCGACGCCGAAATCGTCCGCACTCGCGACCCCAAGGTTTTGGAGGGTTTGGATGCTGTGCTTGATGTTGGGGGTGAGTATGACCCGAGTAGGGATCGGTATGATCATCACCAGAAGGGTTTTGAGGAGGTTTTTGGACATGGGTTTAAGACTAAGCTGAGTAGTGCTGGGCTGGTTTACAAGCATTTTGGGAAGGAAATAATAGCCAAGGAGCTTCAGGTTGATGAAGGACATATTGATGTGCAGAGGCTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCAATTGATGCAGTTGACAATGGGATTAATCAGTATGATACAGACCAGCCTCCAAGATATGTGAATAACACACACTTGTCTTCGAGGGTGGGGAGGTTGAATTTGGACTGGACAGATCCTGATCAGTCATCTGAGAAGGAGAATGAAGCCTTTCAACAAGCAATGGCTCTAGGTGGCAGTGAATTTTTGAACAGTCTGCGTTTTCATGCCAAATCATGGTTACCAGCACGGTCCATCGTGATGGAGTGTCTCTTAGCAAGATGGAGTATTGACCCTAGTGGAGAAATTATGGTTTTGAATCGGTTTTGTCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAGATGAAGATTGACCCTTCCATCAAATATGTTCTCTATCAGGATGACAGGAGTAAAAGCTGGCGTGTTCAAGCTGTGGCAGTAGCTCCTGATAGATTCGAGAGCCGAAAGCCTCTTGCATCTCAATGGCGAGGGCTTAGGGACGATGAGCTCTCAACAGCAACTGGGATTCCCGGATGTGTCTTTGTCCACATGAGTGGGTTCATTGGCGGAAATCAAACATACGACGGTGCTCTGGCCATGGCAAAGGCTAGTCTGAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

362

Amino Acids

40.98

Weight (kDa)

6.9

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 40 - 358 6.4e-138 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 690
AccII CGCG 2 cut(s) 117, 219
AciI CCGC 5 cut(s) 73, 76, 107, 211, 1026
AclWI GGATC 2 cut(s) 294, 584
AcoI YGGCCR 1 cut(s) 1053
AcsI RAATTY 2 cut(s) 574, 656
AcuI CTGAAG 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 283, 690
AgsI TTSAA 7 cut(s) 574, 629, 664, 772, 806, 812, 887
AleI CACNNNNGTG 1 cut(s) 1011
Alw21I GWGCWC 2 cut(s) 969, 1051
Alw26I GTCTC 1 cut(s) 728
AlwI GGATC 2 cut(s) 294, 584
AlwNI CAGNNNCTG 3 cut(s) 442, 593, 980
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 1 cut(s) 1053
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 574, 656
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 705
AsuC2I CCSGG 1 cut(s) 990
AsuHPI GGTGA 3 cut(s) 172, 278, 293
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 1 cut(s) 705
BalI TGGCCA 1 cut(s) 1055
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 969
BbsI GAAGAC 2 cut(s) 49, 546
Bbv12I GWGCWC 2 cut(s) 969, 1051
BbvI GCAGC 1 cut(s) 149
BccI CCATC 4 cut(s) 709, 716, 729, 845
BclI TGATCA 2 cut(s) 295, 595
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 1 cut(s) 728
BfaI CTAG 4 cut(s) 11, 644, 750, 1068
BisI GCNGC 2 cut(s) 76, 163
BlsI GCNGC 2 cut(s) 77, 164
Bme1390I CCNGG 1 cut(s) 990
Bme18I GGWCC 1 cut(s) 705
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 990
BmrI ACTGGG 1 cut(s) 990
BmsI GCATC 4 cut(s) 101, 235, 472, 944
BmuI ACTGGG 1 cut(s) 990
BpiI GAAGAC 2 cut(s) 49, 546
Bpu10I CCTNAGC 1 cut(s) 953
BpuMI CCSGG 1 cut(s) 990
BsaBI GATNNNNATC 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 5 cut(s) 157, 225, 399, 785, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 690
Bse1I ACTGG 2 cut(s) 587, 985
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 594
BseDI CCNNGG 5 cut(s) 157, 225, 399, 785, 1056
BseGI GGATG 4 cut(s) 92, 250, 865, 998
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 283, 690
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 3 cut(s) 66, 341, 597
BseNI ACTGG 2 cut(s) 587, 985
BseRI GAGGAG 2 cut(s) 332, 830
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 2 cut(s) 117, 219
BshFI GGCC 1 cut(s) 1055
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 969, 1051
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 990
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 2 cut(s) 283, 690
BsmAI GTCTC 1 cut(s) 728
BsmFI GGGAC 1 cut(s) 971
BsnI GGCC 1 cut(s) 1055
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 969, 1051
Bsp143I GATC 4 cut(s) 286, 295, 589, 595
Bsp19I CCATGG 1 cut(s) 1056
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 5 cut(s) 73, 76, 107, 211, 1026
BspANI GGCC 1 cut(s) 1055
BspCNI CTCAG 3 cut(s) 65, 342, 598
BspFNI CGCG 2 cut(s) 117, 219
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 2 cut(s) 294, 584
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 2 cut(s) 587, 985
BssECI CCNNGG 5 cut(s) 157, 225, 399, 785, 1056
BssMI GATC 4 cut(s) 286, 295, 589, 595
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 4 cut(s) 225, 399, 785, 1056
Bst4CI ACNGT 3 cut(s) 668, 705, 1046
Bst6I CTCTTC 1 cut(s) 807
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 878
BstDEI CTNAG 7 cut(s) 52, 186, 345, 350, 606, 727, 953
BstDSI CCRYGG 1 cut(s) 1056
BstEII GGTNACC 1 cut(s) 693
BstF5I GGATG 4 cut(s) 92, 250, 865, 998
BstFNI CGCG 2 cut(s) 117, 219
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 289, 298, 592, 598
BstMAI GTCTC 1 cut(s) 728
BstMBI GATC 4 cut(s) 286, 295, 589, 595
BstMWI GCNNNNNNNGC 4 cut(s) 81, 98, 144, 482
BstPI GGTNACC 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 988
BstUI CGCG 2 cut(s) 117, 219
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 2 cut(s) 49, 546
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 3 cut(s) 232, 715, 1013
BstYI RGATCY 1 cut(s) 589
BsuRI GGCC 1 cut(s) 1055
BtgI CCRYGG 1 cut(s) 1056
BtsCI GGATG 4 cut(s) 92, 250, 865, 998
BtsI GCAGTG 2 cut(s) 142, 658
BtsIMutI CAGTG 2 cut(s) 142, 658
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 878
CaiI CAGNNNCTG 3 cut(s) 442, 593, 980
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 705
CseI GACGC 3 cut(s) 90, 106, 206
CviAII CATG 7 cut(s) 88, 169, 332, 680, 690, 1009, 1057
DdeI CTNAG 7 cut(s) 52, 186, 345, 350, 606, 727, 953
DpnI GATC 4 cut(s) 288, 297, 591, 597
DpnII GATC 4 cut(s) 286, 295, 589, 595
EaeI YGGCCR 1 cut(s) 1053
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
EciI GGCGGA 1 cut(s) 1041
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 4 cut(s) 225, 399, 785, 1056
Eco24I GRGCYC 1 cut(s) 969
Eco47I GGWCC 1 cut(s) 705
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 277
Eco91I GGTNACC 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 967
EcoO65I GGTNACC 1 cut(s) 693
EcoT14I CCWWGG 4 cut(s) 225, 399, 785, 1056
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 4 cut(s) 225, 399, 785, 1056
FaeI CATG 7 cut(s) 91, 172, 335, 683, 693, 1012, 1060
FaqI GGGAC 1 cut(s) 971
FatI CATG 7 cut(s) 87, 168, 331, 679, 689, 1008, 1056
FbaI TGATCA 2 cut(s) 295, 595
Fnu4HI GCNGC 2 cut(s) 76, 163
FokI GGATG 4 cut(s) 79, 257, 872, 1005
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 2 cut(s) 76, 163
FspBI CTAG 4 cut(s) 11, 644, 750, 1068
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 76, 163
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 1 cut(s) 1055
HapII CCGG 1 cut(s) 990
HgaI GACGC 3 cut(s) 90, 106, 206
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 7 cut(s) 91, 172, 335, 683, 693, 1012, 1060
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 4 cut(s) 136, 463, 791, 1076
HinfI GANTC 4 cut(s) 172, 772, 912, 985
HpaII CCGG 1 cut(s) 990
HphI GGTGA 3 cut(s) 172, 278, 293
Hpy166II GTNNAC 4 cut(s) 370, 457, 490, 1006
Hpy188I TCNGA 3 cut(s) 196, 607, 1074
Hpy188III TCNNGA 7 cut(s) 169, 218, 593, 712, 857, 905, 916
Hpy8I GTNNAC 4 cut(s) 370, 457, 490, 1006
Hpy99I CGWCG 5 cut(s) 84, 122, 152, 200, 1046
HpyAV CCTTC 6 cut(s) 15, 301, 379, 413, 604, 843
HpyCH4III ACNGT 3 cut(s) 668, 705, 1046
HpyCH4V TGCA 4 cut(s) 18, 436, 485, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 98, 144, 482
HpyF3I CTNAG 7 cut(s) 52, 186, 345, 350, 606, 727, 953
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 7 cut(s) 91, 172, 335, 683, 693, 1012, 1060
HspAI GCGC 1 cut(s) 115
Ksp22I TGATCA 2 cut(s) 295, 595
Kzo9I GATC 4 cut(s) 286, 295, 589, 595
LmnI GCTCC 3 cut(s) 106, 403, 907
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 4 cut(s) 101, 235, 472, 944
MaeI CTAG 4 cut(s) 11, 644, 750, 1068
MaeIII GTNAC 1 cut(s) 693
MalI GATC 4 cut(s) 288, 297, 591, 597
MboI GATC 4 cut(s) 286, 295, 589, 595
MboII GAAGA 5 cut(s) 49, 52, 546, 824, 835
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 2 cut(s) 969, 1051
MlsI TGGCCA 1 cut(s) 1055
MluCI AATT 4 cut(s) 477, 574, 656, 759
MluNI TGGCCA 1 cut(s) 1055
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 1055
MroXI GAANNNNTTC 1 cut(s) 624
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 3 cut(s) 27, 339, 501
MslI CAYNNNNRTG 4 cut(s) 429, 713, 940, 1011
Msp20I TGGCCA 1 cut(s) 1055
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 1 cut(s) 990
MunI CAATTG 1 cut(s) 477
MvnI CGCG 2 cut(s) 117, 219
MwoI GCNNNNNNNGC 4 cut(s) 81, 98, 144, 482
NciI CCSGG 1 cut(s) 990
NcoI CCATGG 1 cut(s) 1056
NdeII GATC 4 cut(s) 286, 295, 589, 595
NlaIII CATG 7 cut(s) 91, 172, 335, 683, 693, 1012, 1060
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 138
NruI TCGCGA 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 1011
PagI TCATGA 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 4 cut(s) 172, 772, 912, 985
PflMI CCANNNNNTGG 1 cut(s) 690
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 2 cut(s) 77, 164
PshBI ATTAAT 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 969
PspEI GGTNACC 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 705
PstNI CAGNNNCTG 3 cut(s) 442, 593, 980
PsuI RGATCY 1 cut(s) 589
RruI TCGCGA 1 cut(s) 219
RseI CAYNNNNRTG 4 cut(s) 429, 713, 940, 1011
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 3 cut(s) 27, 339, 501
SatI GCNGC 2 cut(s) 76, 163
Sau3AI GATC 4 cut(s) 286, 295, 589, 595
Sau96I GGNCC 1 cut(s) 705
ScrFI CCNGG 1 cut(s) 990
SduI GDGCHC 2 cut(s) 969, 1051
SfaNI GCATC 4 cut(s) 101, 235, 472, 944
SinI GGWCC 1 cut(s) 705
SmiMI CAYNNNNRTG 4 cut(s) 429, 713, 940, 1011
Sse9I AATT 4 cut(s) 477, 574, 656, 759
SsiI CCGC 5 cut(s) 73, 76, 107, 211, 1026
SspMI CTAG 4 cut(s) 11, 644, 750, 1068
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 1 cut(s) 988
StyI CCWWGG 4 cut(s) 225, 399, 785, 1056
TaaI ACNGT 3 cut(s) 668, 705, 1046
TaqI TCGA 3 cut(s) 35, 557, 915
TasI AATT 4 cut(s) 477, 574, 656, 759
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 4 cut(s) 172, 772, 912, 985
Tru1I TTAA 3 cut(s) 27, 339, 501
Tru9I TTAA 3 cut(s) 27, 339, 501
TscAI CASTG 2 cut(s) 149, 658
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 9 cut(s) 76, 157, 432, 633, 668, 785, 836, 1009, 1071
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 149, 658
Van91I CCANNNNNTGG 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 705
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 2 cut(s) 574, 656
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 4 cut(s) 11, 644, 750, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.