RLG00000004815

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012304
Physical Location & Seq
Forward (+)
62770818 .. 62773425
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004815

Sequence Viewer

Length: 1071 bp
ATGCTTCCCTTGGTAAGCAGAAGGTTTAAGCTGTCGACTAGTCTACCCATAGTCTTCCACCGCCCACGCTTCATGGCCTCCGTAGCTCCACCGCCCAAGCGCGTCGGCACCCACAATGGAAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGATAAGTTCTCCAACGCCGAAATCGTCCGCACCCGCGACCCCAAGGTTTTGGAGGGTTTGGACGCTGTGCTTGATGTTGGGGGTGTGTATGACCCGAGCAGGGATCGGTACGATCATCACCAGAAGGGGTTTGAGGAGGTTTTTGGCCATGGGTTTAAGACCAAGCTGAGTAGTGCTGGACTGGTTTACAAGCATTTTGGGAAGGAAATCATAGCCAAGGAGCTTCAAGTTGATGAAGGACACCTTGATGTGCAGAGGCTGTTCTTGGCTGTTTACAAAAGCTTTATGGAGGCGATTGATGCAGTTGACAATGGGATCAATCAGTATGATACAGACCAGCCTCCAAGATATGTGAATAATACACACTTATCTTCAAGGGTGGGGAGGTTGAATTTGGACTGGATAGATCCTGATCAATCATCTGAGAAGGAGAATGAAGCCTTTCAACAAGCAATGGCTCTAGCTGGCAGTGAATTTTTAAGTAGTCTGCGTTTTCATGCCCAATCATGGTTACCAGCACGGTCTATTGTGATGGAGTGTCTCTTAGCAAGATGGAGTATCGATCCTAGTGGAGAAATTATGGTTTTGAATCGGTTTTGTCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAGATGAAGATTGACCCTCCCATTAAATATGTTCTCTATCAGGATGATAGGAGTAAAAGCTGGCGAGTTCAAGCAGTGGCAGTTGCTCCTGATAGATTTGAGAGCCGAAAGCCTCTTGCATCTCAATGGCGAGGGCTTAGGGACGATGAGCTCTCAACAGCAACTGGGATTCCCGGATGTGTCTTTGTCCACATGAGCGGGTTTATCGGAGGAAATCAAACATACGAGGGTGCTCTGGCCATGGCAAAGGCTAGTCTGAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

357

Amino Acids

40.29

Weight (kDa)

6.47

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 35 - 353 3.6e-138 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 999
AccI GTMKAC 2 cut(s) 35, 43
AccII CGCG 2 cut(s) 102, 204
AciI CCGC 5 cut(s) 61, 92, 196, 202, 999
AclWI GGATC 4 cut(s) 279, 491, 569, 725
AcoI YGGCCR 2 cut(s) 313, 1038
AcsI RAATTY 2 cut(s) 559, 641
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 268, 675
AgsI TTSAA 8 cut(s) 395, 543, 559, 614, 757, 791, 797, 872
AhlI ACTAGT 1 cut(s) 38
Alw21I GWGCWC 2 cut(s) 954, 1036
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 4 cut(s) 279, 491, 569, 725
AlwNI CAGNNNCTG 2 cut(s) 427, 965
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 3 cut(s) 75, 313, 1038
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 559, 641
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 2 cut(s) 157, 278
AvaI CYCGRG 1 cut(s) 262
BalI TGGCCA 2 cut(s) 315, 1040
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 954, 1036
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 694, 714
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 1 cut(s) 713
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 4 cut(s) 39, 629, 735, 1053
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 975
BmeT110I CYCGRG 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 975
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 2 cut(s) 457, 929
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 975
Bsa29I ATCGAT 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 7 cut(s) 9, 142, 210, 316, 384, 770, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 675
Bse1I ACTGG 3 cut(s) 354, 572, 970
Bse3DI GCAATG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 7 cut(s) 9, 142, 210, 316, 384, 770, 1041
BseGI GGATG 2 cut(s) 850, 983
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 268, 675
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 2 cut(s) 326, 582
BseNI ACTGG 3 cut(s) 354, 572, 970
BseRI GAGGAG 2 cut(s) 317, 815
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 2 cut(s) 102, 204
BshFI GGCC 3 cut(s) 77, 315, 1040
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 729
BsiHKAI GWGCWC 2 cut(s) 954, 1036
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 975
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 2 cut(s) 268, 675
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 956
BsnI GGCC 3 cut(s) 77, 315, 1040
BsoBI CYCGRG 1 cut(s) 262
Bsp1286I GDGCHC 2 cut(s) 954, 1036
Bsp143I GATC 6 cut(s) 271, 280, 483, 574, 580, 730
Bsp19I CCATGG 2 cut(s) 316, 1041
BspACI CCGC 5 cut(s) 61, 92, 196, 202, 999
BspANI GGCC 3 cut(s) 77, 315, 1040
BspCNI CTCAG 2 cut(s) 327, 583
BspDI ATCGAT 1 cut(s) 729
BspFNI CGCG 2 cut(s) 102, 204
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 4 cut(s) 279, 491, 569, 725
BspT107I GGYRCC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 999
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 3 cut(s) 354, 572, 970
BssECI CCNNGG 7 cut(s) 9, 142, 210, 316, 384, 770, 1041
BssMI GATC 6 cut(s) 271, 280, 483, 574, 580, 730
BssT1I CCWWGG 6 cut(s) 9, 210, 316, 384, 770, 1041
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 1 cut(s) 792
BstC8I GCNNGC 2 cut(s) 634, 863
BstDEI CTNAG 4 cut(s) 335, 591, 712, 938
BstDSI CCRYGG 2 cut(s) 316, 1041
BstEII GGTNACC 1 cut(s) 678
BstF5I GGATG 2 cut(s) 850, 983
BstFNI CGCG 2 cut(s) 102, 204
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 6 cut(s) 274, 283, 486, 577, 583, 733
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 6 cut(s) 271, 280, 483, 574, 580, 730
BstMWI GCNNNNNNNGC 3 cut(s) 83, 129, 467
BstPI GGTNACC 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 973
BstUI CGCG 2 cut(s) 102, 204
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 729
BsuRI GGCC 3 cut(s) 77, 315, 1040
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 2 cut(s) 316, 1041
BtsCI GGATG 2 cut(s) 850, 983
BtsI GCAGTG 3 cut(s) 127, 643, 882
BtsIMutI CAGTG 3 cut(s) 127, 643, 882
Cac8I GCNNGC 2 cut(s) 634, 863
CaiI CAGNNNCTG 2 cut(s) 427, 965
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 729
CseI GACGC 2 cut(s) 91, 239
Csp6I GTAC 1 cut(s) 277
CviAII CATG 7 cut(s) 73, 154, 317, 665, 675, 994, 1042
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 4 cut(s) 335, 591, 712, 938
DpnI GATC 6 cut(s) 273, 282, 485, 576, 582, 732
DpnII GATC 6 cut(s) 271, 280, 483, 574, 580, 730
EaeI YGGCCR 2 cut(s) 313, 1038
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Ecl136II GAGCTC 1 cut(s) 952
Eco130I CCWWGG 6 cut(s) 9, 210, 316, 384, 770, 1041
Eco24I GRGCYC 1 cut(s) 954
Eco53kI GAGCTC 1 cut(s) 952
Eco88I CYCGRG 1 cut(s) 262
Eco91I GGTNACC 1 cut(s) 678
EcoICRI GAGCTC 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 678
EcoT14I CCWWGG 6 cut(s) 9, 210, 316, 384, 770, 1041
EcoT38I GRGCYC 1 cut(s) 954
ErhI CCWWGG 6 cut(s) 9, 210, 316, 384, 770, 1041
FaeI CATG 7 cut(s) 76, 157, 320, 668, 678, 997, 1045
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 956
FatI CATG 7 cut(s) 72, 153, 316, 664, 674, 993, 1041
FauI CCCGC 2 cut(s) 209, 992
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 2 cut(s) 35, 43
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 2 cut(s) 857, 990
FriOI GRGCYC 1 cut(s) 954
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 4 cut(s) 39, 629, 735, 1053
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 3 cut(s) 77, 315, 1040
HapII CCGG 1 cut(s) 975
HgaI GACGC 2 cut(s) 91, 239
HhaI GCGC 1 cut(s) 102
Hin1II CATG 7 cut(s) 76, 157, 320, 668, 678, 997, 1045
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 2 cut(s) 36, 475
HindII GTYRAC 2 cut(s) 36, 475
HindIII AAGCTT 4 cut(s) 121, 448, 776, 1061
HinfI GANTC 3 cut(s) 157, 757, 970
HpaII CCGG 1 cut(s) 975
HphI GGTGA 2 cut(s) 157, 278
Hpy166II GTNNAC 6 cut(s) 36, 44, 355, 442, 475, 991
Hpy188I TCNGA 3 cut(s) 592, 1010, 1059
Hpy188III TCNNGA 4 cut(s) 154, 578, 842, 890
Hpy8I GTNNAC 6 cut(s) 36, 44, 355, 442, 475, 991
Hpy99I CGWCG 2 cut(s) 107, 137
HpyAV CCTTC 5 cut(s) 15, 286, 364, 398, 589
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4V TGCA 3 cut(s) 421, 470, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 129, 467
HpyF3I CTNAG 4 cut(s) 335, 591, 712, 938
Hsp92II CATG 7 cut(s) 76, 157, 320, 668, 678, 997, 1045
HspAI GCGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 271, 280, 483, 574, 580, 730
LmnI GCTCC 3 cut(s) 91, 388, 892
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 2 cut(s) 457, 929
MaeI CTAG 4 cut(s) 39, 629, 735, 1053
MaeIII GTNAC 1 cut(s) 678
MalI GATC 6 cut(s) 273, 282, 485, 576, 582, 732
MbiI CCGCTC 1 cut(s) 999
MboI GATC 6 cut(s) 271, 280, 483, 574, 580, 730
MboII GAAGA 4 cut(s) 46, 531, 809, 820
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 954, 1036
MlsI TGGCCA 2 cut(s) 315, 1040
MluCI AATT 3 cut(s) 559, 641, 744
MluNI TGGCCA 2 cut(s) 315, 1040
MmeI TCCRAC 1 cut(s) 204
Mox20I TGGCCA 2 cut(s) 315, 1040
MroXI GAANNNNTTC 1 cut(s) 609
MscI TGGCCA 2 cut(s) 315, 1040
MseI TTAA 4 cut(s) 27, 324, 647, 825
MslI CAYNNNNRTG 2 cut(s) 414, 925
Msp20I TGGCCA 2 cut(s) 315, 1040
MspI CCGG 1 cut(s) 975
MspR9I CCNGG 1 cut(s) 975
MvnI CGCG 2 cut(s) 102, 204
MwoI GCNNNNNNNGC 3 cut(s) 83, 129, 467
NciI CCSGG 1 cut(s) 975
NcoI CCATGG 2 cut(s) 316, 1041
NdeII GATC 6 cut(s) 271, 280, 483, 574, 580, 730
NlaIII CATG 7 cut(s) 76, 157, 320, 668, 678, 997, 1045
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 3 cut(s) 157, 757, 970
PfoI TCCNGGA 1 cut(s) 973
PkrI GCNGC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 954
PspEI GGTNACC 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 109
PstNI CAGNNNCTG 2 cut(s) 427, 965
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 414, 925
SacI GAGCTC 1 cut(s) 954
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 4 cut(s) 27, 324, 647, 825
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 6 cut(s) 271, 280, 483, 574, 580, 730
ScrFI CCNGG 1 cut(s) 975
SduI GDGCHC 2 cut(s) 954, 1036
SfaNI GCATC 2 cut(s) 457, 929
SmiMI CAYNNNNRTG 2 cut(s) 414, 925
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 3 cut(s) 559, 641, 744
SsiI CCGC 5 cut(s) 61, 92, 196, 202, 999
SspMI CTAG 4 cut(s) 39, 629, 735, 1053
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 6 cut(s) 9, 210, 316, 384, 770, 1041
TaaI ACNGT 1 cut(s) 690
TaqI TCGA 2 cut(s) 35, 729
TasI AATT 3 cut(s) 559, 641, 744
TfiI GAWTC 3 cut(s) 157, 757, 970
Tru1I TTAA 4 cut(s) 27, 324, 647, 825
Tru9I TTAA 4 cut(s) 27, 324, 647, 825
TscAI CASTG 3 cut(s) 134, 643, 882
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 8 cut(s) 61, 142, 417, 618, 653, 770, 821, 1056
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 3 cut(s) 134, 643, 882
XapI RAATTY 2 cut(s) 559, 641
XmiI GTMKAC 2 cut(s) 35, 43
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 4 cut(s) 39, 629, 735, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.