MD06G1117500.v1.1

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012304
Physical Location & Seq
Reverse (-)
25641447 .. 25645020
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1117500.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGCTTCCGCTAGTAGGCAGGGGGTTTAAGCACACATTCCCTATCGCCTTCCCCGCCCACTACCACCGCCTACATCTGCACCTCTCCCGCTCTCTCATGGCCGCCACCACTTCAGCTAAGCGAGTCGGGACCCACAACGGTAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTAACCGACAAGTTCTCCAACGCCGAAATCGTCCGCACCCGCGACCCCAAGGTTTTGGAGGGTCTGGATGCTGTGCTTGATGTTGGGGGTGTGTATGATCCTAGTCGGGATCGATACGATCATCACCAGAAGGGTTTCGAGGAGGTTTTTGGGCATGGGTTTAAGACTAAGCTGAGTAGTGCTGGTCTGGTTTACAAGCATTTCGGGAAGGAAATAATAGCGAAGGAGCTTCAGGTCGATGAAGGTCACCTCGATGTGCATAGGTTATTCTTGGCTGTGTACAAAAGCTTTATGGAGGCAATTGATGCTGTTGACAATGGGATCAATCAGTATGATACTGACCAGCCTCCAAGATATGTGAATAATACACACTTGTCTTCAAGGGTAGGCAGGTTGAATTTGGATTGGATAGATCCCGATCAATCGTCTGAAAAGGAGAATGAAGCCTTTCAACGAGCAATGGAACTGGCGGGCAGCGAGTTTTTAAGTAGTGTCCGTTTTCATGCAAAATCATGGTTACCAGCACGGTCTATTGTAATGGAGTGTCTCTTAGCAAGATGGAGTGTTGATCCTAGTGGAGAAATCATGGTTATGAATCGATTTTGCCCTTGGAAACTTCATTTATTTGAACATGAAGAGGAGATGAAGATTGAGCCGCCCATCAAATATGTTCTTTATCAGGATGATAGGAGCAAACACTGGAGAGTTCAGGCGGTGGCAGTTGCTCCTGAAAGTTTTGAGAGCCGAAAGGCTCTTGCATCAAAATGGCGAGGGCTTAGGGATGAGGAGCTCTCGAAGGAGGCTGGGATTCCCGGATGTGTTTTTGTTCACATGAGTGGATTTATCGGAGGAAATCAAACTTATGAAGGTGCTCTTGCCATGGCGAAAGCGAGCTTGAAGTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

364

Amino Acids

41.25

Weight (kDa)

6.55

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 42 - 360 3.4e-138 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 1 cut(s) 225
AclWI GGATC 5 cut(s) 275, 300, 512, 590, 746
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 2 cut(s) 96, 398
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 5 cut(s) 564, 580, 635, 812, 1081
AleI CACNNNNGTG 1 cut(s) 1017
AluBI AGCT 7 cut(s) 116, 144, 355, 412, 471, 973, 1077
AluI AGCT 7 cut(s) 116, 144, 355, 412, 471, 973, 1077
Alw21I GWGCWC 2 cut(s) 975, 1057
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 5 cut(s) 275, 300, 512, 590, 746
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 168, 657
ApoI RAATTY 1 cut(s) 580
Asp700I GAANNNNTTC 2 cut(s) 317, 630
AspS9I GGNCC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 2 cut(s) 299, 422
AvaII GGWCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 975, 1057
BbvI GCAGC 2 cut(s) 155, 669
BccI CCATC 2 cut(s) 735, 851
BcnI CCSGG 1 cut(s) 996
BcoDI GTCTC 1 cut(s) 734
BfaI CTAG 3 cut(s) 11, 285, 756
BfuAI ACCTGC 1 cut(s) 564
BisI GCNGC 4 cut(s) 102, 169, 658, 839
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 4 cut(s) 103, 170, 659, 840
Bme1390I CCNGG 1 cut(s) 996
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 130, 131
BmrFI CCNGG 1 cut(s) 996
BmsI GCATC 3 cut(s) 241, 478, 950
BpiI GAAGAC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 1 cut(s) 904
Bpu10I CCTNAGC 1 cut(s) 959
Bpu1102I GCTNAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 996
Bsa29I ATCGAT 2 cut(s) 295, 781
BsaBI GATNNNNATC 1 cut(s) 600
BsaJI CCNNGG 4 cut(s) 163, 231, 791, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 654, 887
Bse3DI GCAATG 1 cut(s) 648
Bse8I GATNNNNATC 1 cut(s) 600
BseCI ATCGAT 2 cut(s) 295, 781
BseDI CCNNGG 4 cut(s) 163, 231, 791, 1062
BseGI GGATG 4 cut(s) 256, 871, 970, 1004
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 2 cut(s) 654, 887
BseRI GAGGAG 3 cut(s) 338, 836, 983
BseXI GCAGC 2 cut(s) 155, 669
BseYI CCCAGC 1 cut(s) 986
BsgI GTGCAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 2 cut(s) 295, 781
BsiHKAI GWGCWC 2 cut(s) 975, 1057
BsiSI CCGG 1 cut(s) 996
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 975, 1057
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
Bsp1720I GCTNAGC 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 1062
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 2 cut(s) 295, 781
BspFNI CGCG 1 cut(s) 225
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 130, 131
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 5 cut(s) 275, 300, 512, 590, 746
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 648
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 654, 887
BssECI CCNNGG 4 cut(s) 163, 231, 791, 1062
BssMI GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
BssT1I CCWWGG 3 cut(s) 231, 791, 1062
Bst4CI ACNGT 2 cut(s) 140, 711
Bst6I CTCTTC 1 cut(s) 813
BstAPI GCANNNNNTGC 1 cut(s) 488
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 655, 1075
BstDEI CTNAG 5 cut(s) 117, 351, 356, 733, 959
BstDSI CCRYGG 1 cut(s) 1062
BstEII GGTNACC 2 cut(s) 428, 699
BstF5I GGATG 4 cut(s) 256, 871, 970, 1004
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 7 cut(s) 283, 295, 304, 507, 598, 604, 754
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
BstMWI GCNNNNNNNGC 3 cut(s) 53, 150, 488
BstPI GGTNACC 2 cut(s) 428, 699
BstSCI CCNGG 1 cut(s) 994
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 155, 669
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 595
Bsu15I ATCGAT 2 cut(s) 295, 781
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 2 cut(s) 295, 781
BtgI CCRYGG 1 cut(s) 1062
BtsCI GGATG 4 cut(s) 256, 871, 970, 1004
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 880
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 655, 1075
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 129
ClaI ATCGAT 2 cut(s) 295, 781
Csp6I GTAC 1 cut(s) 463
CviAII CATG 9 cut(s) 97, 175, 338, 686, 696, 769, 815, 1015, 1063
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 5 cut(s) 117, 351, 356, 733, 959
DpnI GATC 7 cut(s) 282, 294, 303, 506, 597, 603, 753
DpnII GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Ecl136II GAGCTC 1 cut(s) 973
Eco130I CCWWGG 3 cut(s) 231, 791, 1062
Eco24I GRGCYC 1 cut(s) 975
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 2 cut(s) 96, 398
Eco91I GGTNACC 2 cut(s) 428, 699
EcoICRI GAGCTC 1 cut(s) 973
EcoO109I RGGNCCY 1 cut(s) 129
EcoO65I GGTNACC 2 cut(s) 428, 699
EcoT14I CCWWGG 3 cut(s) 231, 791, 1062
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 3 cut(s) 231, 791, 1062
FaeI CATG 9 cut(s) 100, 178, 341, 689, 699, 772, 818, 1018, 1066
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FaqI GGGAC 1 cut(s) 142
FatI CATG 9 cut(s) 96, 174, 337, 685, 695, 768, 814, 1014, 1062
FauI CCCGC 4 cut(s) 61, 95, 230, 646
Fnu4HI GCNGC 4 cut(s) 102, 169, 658, 839
FokI GGATG 4 cut(s) 263, 878, 977, 1011
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 4 cut(s) 102, 169, 658, 839
FspBI CTAG 3 cut(s) 11, 285, 756
GluI GCNGC 4 cut(s) 102, 169, 658, 839
GsaI CCCAGC 1 cut(s) 990
GsuI CTGGAG 1 cut(s) 904
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 996
Hin1II CATG 9 cut(s) 100, 178, 341, 689, 699, 772, 818, 1018, 1066
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 4 cut(s) 123, 178, 778, 991
HpaII CCGG 1 cut(s) 996
HphI GGTGA 2 cut(s) 299, 422
Hpy166II GTNNAC 4 cut(s) 376, 463, 496, 1012
Hpy188I TCNGA 2 cut(s) 613, 1031
Hpy188III TCNNGA 9 cut(s) 127, 175, 248, 290, 388, 599, 863, 911, 976
Hpy8I GTNNAC 4 cut(s) 376, 463, 496, 1012
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 7 cut(s) 58, 307, 385, 400, 419, 973, 1043
HpyCH4III ACNGT 2 cut(s) 140, 711
HpyCH4V TGCA 4 cut(s) 79, 442, 689, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 150, 488
HpyF3I CTNAG 5 cut(s) 117, 351, 356, 733, 959
Hsp92II CATG 9 cut(s) 100, 178, 341, 689, 699, 772, 818, 1018, 1066
KflI GGGWCCC 1 cut(s) 129
Kzo9I GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
LmnI GCTCC 4 cut(s) 409, 873, 913, 970
Lsp1109I GCAGC 2 cut(s) 155, 669
LweI GCATC 3 cut(s) 241, 478, 950
MaeI CTAG 3 cut(s) 11, 285, 756
MaeIII GTNAC 2 cut(s) 428, 699
MalI GATC 7 cut(s) 282, 294, 303, 506, 597, 603, 753
MbiI CCGCTC 1 cut(s) 90
MboI GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
MboII GAAGA 3 cut(s) 552, 830, 841
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 975, 1057
MluCI AATT 2 cut(s) 483, 580
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 225
MroXI GAANNNNTTC 2 cut(s) 317, 630
MseI TTAA 3 cut(s) 27, 345, 668
MslI CAYNNNNRTG 4 cut(s) 435, 773, 946, 1017
MspI CCGG 1 cut(s) 996
MspR9I CCNGG 1 cut(s) 996
MunI CAATTG 1 cut(s) 483
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 53, 150, 488
NciI CCSGG 1 cut(s) 996
NcoI CCATGG 1 cut(s) 1062
NdeII GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
NlaIII CATG 9 cut(s) 100, 178, 341, 689, 699, 772, 818, 1018, 1066
NlaIV GGNNCC 2 cut(s) 130, 131
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 428
OliI CACNNNNGTG 1 cut(s) 1017
PagI TCATGA 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 2 cut(s) 317, 630
PfeI GAWTC 3 cut(s) 178, 778, 991
PfoI TCCNGGA 1 cut(s) 994
PkrI GCNGC 4 cut(s) 103, 170, 659, 840
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 975
Psp5II RGGWCCY 1 cut(s) 129
PspEI GGTNACC 2 cut(s) 428, 699
PspFI CCCAGC 1 cut(s) 986
PspN4I GGNNCC 2 cut(s) 130, 131
PspPI GGNCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 129
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 4 cut(s) 435, 773, 946, 1017
SacI GAGCTC 1 cut(s) 975
SaqAI TTAA 3 cut(s) 27, 345, 668
SatI GCNGC 4 cut(s) 102, 169, 658, 839
Sau3AI GATC 7 cut(s) 280, 292, 301, 504, 595, 601, 751
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 996
SduI GDGCHC 2 cut(s) 975, 1057
SfaNI GCATC 3 cut(s) 241, 478, 950
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 4 cut(s) 435, 773, 946, 1017
Sse9I AATT 2 cut(s) 483, 580
SspMI CTAG 3 cut(s) 11, 285, 756
SstI GAGCTC 1 cut(s) 975
StyD4I CCNGG 1 cut(s) 994
StyI CCWWGG 3 cut(s) 231, 791, 1062
TaaI ACNGT 2 cut(s) 140, 711
TaqI TCGA 6 cut(s) 295, 321, 420, 435, 781, 977
TasI AATT 2 cut(s) 483, 580
TatI WGTACW 1 cut(s) 462
TauI GCSGC 2 cut(s) 104, 841
TfiI GAWTC 3 cut(s) 178, 778, 991
Tru1I TTAA 3 cut(s) 27, 345, 668
Tru9I TTAA 3 cut(s) 27, 345, 668
TscAI CASTG 2 cut(s) 155, 887
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 168, 657
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 9 cut(s) 163, 438, 639, 674, 791, 791, 831, 842, 1062
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 155, 887
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 1 cut(s) 580
XmnI GAANNNNTTC 2 cut(s) 317, 630
XspI CTAG 3 cut(s) 11, 285, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.