AT5G42930

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005988
Physical Location & Seq
Reverse (-)
17210533 .. 17214220
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42930.2

Sequence Viewer

Length: 1404 bp
ATGTCTAGAACCAAAAACTACTTTGTGTTGGATCCGAGAGAAGCCACCGTCTCGGATCTTATACATCTTCTCTTCTCATCGGATCTCGGAGATAGAAAGTTCATCCATTCTTCGGAAGAGAGGATTGAGGATGATCTTTCCAGATTCCGGCGACGGTGGATTATCTTTGTATCCATCGTTATTCAAAAACTCATAATTCTCTTTAAGAAACCTCTCTATTTTGTTGGATTTTCTCTTGCTTGTTGGCTCAACCTTCTTTCTTCCAATGGTGGTTTCTTGATGATACTCCCAAATCTTTTCAAAGGAAACATTATTTGGCCGGAAAAAGCATCAGCGACGTTTGCATCACTAAACGGAAACCTAGACCGGCGGGTAGAGTTAAACCCGAAAGTAGAGAGAGGAAGTAAAAGATACAAAGCAATGTTGTCAATTATGGCTTCTAAGCTGTCTTACGAGAATATAAACTTTGTCAGCTCCGTTCTTCACAACCATTGGAAGATGGACTTATTAGGTTTCTACAGCTGTTGGAATGGTTACCAGAAACAAAGATCAACGGAGGTGATTGTTATAAAGGACACAAGTACAGATCCAAACCTCATCATCGTTAGTTTCAGAGGCACTGATCCTTTCGATGCCGATGATTGGTGTACAGACCTGGATCTCTCTTGGTACGAGGTTAAGAATGTGGGAAAGATTCATGGCGGGTTCATGAAAGCTTTGGGCCTTCAAAAAGAAGGATGGCCTAAAGAAGTAAACCTTGACGAAACCCAAAACGCAACAACTCTATATGCATACTACACTGTTAGGCGTCACTTAAAAGAAATCCTCGACCAAAACCCGACATCTAAATTTATATTGACCGGACATAGCCTAGGTGGGGCTTTAGCGATCCTATTCACGGCTGTTTTGGTGATGCATGATGAGGAGCAAATGCTAGAGAGACTAGAAGGAGTTTACACATTTGGACAGCCACGCGTAGGCGACGAGGAGTTTGGAAATTTCATGAAAGATTCACTAAAGAAGTTTGACGTGAAGTATGAAAGATATGTTTATTGCAACGACATGGTTCCTAGGTTGCCTTTCGACGACAAAACACTCATGTTTAAACACTTTGGGGCATGCCTTTACTATGACAGTTTCTATAAAGGAAAGGTAGAGGAAGAGGAACCAAACAAAAACTACTTTAATCTCGTATGGGTTTTACCAAAGATAATGAATGCACTGTGGGAGTTGATACGTAGTTTCGTCATGCCTTATTGGAAAGGTGGAGAGTTCAGAGAAGGATGGTTCTTAAGGTGTTTTAGGGTTGTTGCATTGTTGATTCCTGGATTACCTGCTCACTTCCCTAATGAGTACATCAATGTTACTCTTTTAGGTGACTTACCTGACTCGCATCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005615 GO:0044421
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

467

Amino Acids

54.33

Weight (kDa)

6.62

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 201 - 362 2.6e-35 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 1342
AccII CGCG 1 cut(s) 975
AciI CCGC 2 cut(s) 370, 702
AclWI GGATC 8 cut(s) 26, 39, 63, 90, 581, 617, 666, 883
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 2 cut(s) 848, 997
AcyI GRCGYC 1 cut(s) 808
AfaI GTAC 4 cut(s) 583, 649, 671, 1355
AfiI CCNNNNNNNGG 6 cut(s) 112, 147, 642, 877, 898, 977
AflII CTTAAG 1 cut(s) 1291
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 3 cut(s) 185, 301, 728
AjiI CACGTC 1 cut(s) 1030
AjnI CCWGG 2 cut(s) 654, 1324
AjuI GAANNNNNNNTTGG 4 cut(s) 257, 289, 298, 330
AluBI AGCT 4 cut(s) 445, 474, 522, 716
AluI AGCT 4 cut(s) 445, 474, 522, 716
Alw26I GTCTC 2 cut(s) 55, 934
AlwI GGATC 8 cut(s) 26, 39, 63, 90, 581, 617, 666, 883
AoxI GGCC 3 cut(s) 317, 721, 740
ApoI RAATTY 2 cut(s) 848, 997
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
AspA2I CCTAGG 2 cut(s) 871, 1070
AspS9I GGNCC 1 cut(s) 721
AsuHPI GGTGA 3 cut(s) 571, 922, 1388
AvrII CCTAGG 2 cut(s) 871, 1070
BamHI GGATCC 1 cut(s) 31
BccI CCATC 4 cut(s) 182, 493, 732, 1278
BceAI ACGGC 1 cut(s) 915
BciT130I CCWGG 2 cut(s) 656, 1326
BciVI GTATCC 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 55, 934
BfaI CTAG 6 cut(s) 6, 362, 872, 935, 944, 1071
BfmI CTRYAG 1 cut(s) 517
BfrI CTTAAG 1 cut(s) 1291
BfuAI ACCTGC 1 cut(s) 1342
BfuI GTATCC 1 cut(s) 181
BlnI CCTAGG 2 cut(s) 871, 1070
Bme1390I CCNGG 2 cut(s) 656, 1326
BmgBI CACGTC 1 cut(s) 1030
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 3 cut(s) 33, 1068, 1167
BmrFI CCNGG 2 cut(s) 656, 1326
BmsI GCATC 4 cut(s) 338, 353, 622, 903
BsaAI YACGTR 1 cut(s) 1238
BsaHI GRCGYC 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 871, 1070
BsaWI WCCGGW 1 cut(s) 860
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 147, 642, 877, 898, 977
Bse118I RCCGGY 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 656, 1326
BseDI CCNNGG 2 cut(s) 871, 1070
BseGI GGATG 4 cut(s) 102, 136, 743, 1289
BseLI CCNNNNNNNGG 6 cut(s) 112, 147, 642, 877, 898, 977
BseMI GCAATG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 938, 1001
Bsh1236I CGCG 1 cut(s) 975
BshFI GGCC 3 cut(s) 319, 723, 742
BsiSI CCGG 4 cut(s) 148, 320, 367, 861
BslI CCNNNNNNNGG 6 cut(s) 112, 147, 642, 877, 898, 977
BsmAI GTCTC 2 cut(s) 55, 934
BsmBI CGTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 3 cut(s) 319, 723, 742
Bsp1407I TGTACA 1 cut(s) 647
Bsp143I GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
BspACI CCGC 2 cut(s) 370, 702
BspANI GGCC 3 cut(s) 319, 723, 742
BspFNI CGCG 1 cut(s) 975
BspHI TCATGA 2 cut(s) 708, 1002
BspLI GGNNCC 3 cut(s) 33, 1068, 1167
BspMI ACCTGC 1 cut(s) 1342
BspPI GGATC 8 cut(s) 26, 39, 63, 90, 581, 617, 666, 883
BspTI CTTAAG 1 cut(s) 1291
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 647
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 871, 1070
BssMI GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
BssNI GRCGYC 1 cut(s) 808
BssT1I CCWWGG 2 cut(s) 871, 1070
Bst2UI CCWGG 2 cut(s) 656, 1326
Bst4CI ACNGT 5 cut(s) 49, 156, 802, 1136, 1224
Bst6I CTCTTC 3 cut(s) 77, 111, 1155
BstACI GRCGYC 1 cut(s) 808
BstAFI CTTAAG 1 cut(s) 1291
BstAUI TGTACA 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 1238
BstC8I GCNNGC 1 cut(s) 1120
BstDEI CTNAG 1 cut(s) 441
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 4 cut(s) 102, 136, 743, 1289
BstFNI CGCG 1 cut(s) 975
BstKTI GATC 9 cut(s) 34, 58, 85, 136, 551, 589, 625, 661, 891
BstMAI GTCTC 2 cut(s) 55, 934
BstMBI GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 2 cut(s) 656, 1326
BstNSI RCATGY 1 cut(s) 1122
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 654, 1324
BstSFI CTRYAG 1 cut(s) 517
BstSNI TACGTA 1 cut(s) 1238
BstUI CGCG 1 cut(s) 975
BstX2I RGATCY 5 cut(s) 31, 55, 82, 586, 658
BstYI RGATCY 5 cut(s) 31, 55, 82, 586, 658
BsuI GTATCC 1 cut(s) 181
BsuRI GGCC 3 cut(s) 319, 723, 742
BtrI CACGTC 1 cut(s) 1030
BtsCI GGATG 4 cut(s) 102, 136, 743, 1289
BtsIMutI CAGTG 3 cut(s) 618, 798, 1220
BveI ACCTGC 1 cut(s) 1342
Cac8I GCNNGC 1 cut(s) 1120
CciI TCATGA 2 cut(s) 708, 1002
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 721
CseI GACGC 1 cut(s) 797
Csp6I GTAC 4 cut(s) 582, 648, 670, 1354
CviAII CATG 8 cut(s) 698, 709, 917, 1003, 1063, 1099, 1119, 1249
CviQI GTAC 4 cut(s) 582, 648, 670, 1354
DdeI CTNAG 1 cut(s) 441
DpnI GATC 9 cut(s) 33, 57, 84, 135, 550, 588, 624, 660, 890
DpnII GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
DraI TTTAAA 1 cut(s) 1105
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 3 cut(s) 77, 111, 1155
EarI CTCTTC 3 cut(s) 77, 111, 1155
Eco105I TACGTA 1 cut(s) 1238
Eco130I CCWWGG 2 cut(s) 871, 1070
Eco91I GGTNACC 1 cut(s) 533
EcoO65I GGTNACC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 654, 1324
EcoT14I CCWWGG 2 cut(s) 871, 1070
EcoT22I ATGCAT 2 cut(s) 793, 918
ErhI CCWWGG 2 cut(s) 871, 1070
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 8 cut(s) 701, 712, 920, 1006, 1066, 1102, 1122, 1252
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 741, 773
FatI CATG 8 cut(s) 697, 708, 916, 1002, 1062, 1098, 1118, 1248
FauI CCCGC 2 cut(s) 363, 695
FokI GGATG 4 cut(s) 89, 143, 750, 1296
FspBI CTAG 6 cut(s) 6, 362, 872, 935, 944, 1071
HaeIII GGCC 3 cut(s) 319, 723, 742
HapII CCGG 4 cut(s) 148, 320, 367, 861
HgaI GACGC 1 cut(s) 797
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 8 cut(s) 701, 712, 920, 1006, 1066, 1102, 1122, 1252
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 5 cut(s) 144, 694, 1010, 1321, 1388
HpaII CCGG 4 cut(s) 148, 320, 367, 861
HphI GGTGA 3 cut(s) 571, 922, 1388
Hpy166II GTNNAC 3 cut(s) 648, 754, 955
Hpy188I TCNGA 7 cut(s) 36, 55, 82, 89, 115, 614, 1277
Hpy188III TCNNGA 6 cut(s) 6, 141, 277, 709, 1003, 1397
Hpy8I GTNNAC 3 cut(s) 648, 754, 955
Hpy99I CGWCG 4 cut(s) 156, 340, 986, 1088
HpyAV CCTTC 5 cut(s) 263, 728, 734, 941, 1274
HpyCH4III ACNGT 5 cut(s) 49, 156, 802, 1136, 1224
HpyCH4IV ACGT 3 cut(s) 338, 1029, 1237
HpyCH4V TGCA 6 cut(s) 344, 791, 916, 1056, 1220, 1313
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 3 cut(s) 338, 1029, 1237
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 8 cut(s) 701, 712, 920, 1006, 1066, 1102, 1122, 1252
Kzo9I GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
LmnI GCTCC 2 cut(s) 479, 925
LweI GCATC 4 cut(s) 338, 353, 622, 903
MaeI CTAG 6 cut(s) 6, 362, 872, 935, 944, 1071
MaeII ACGT 3 cut(s) 338, 1029, 1237
MaeIII GTNAC 4 cut(s) 533, 809, 1363, 1376
MalI GATC 9 cut(s) 33, 57, 84, 135, 550, 588, 624, 660, 890
MboI GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
MboII GAAGA 8 cut(s) 59, 64, 102, 128, 252, 473, 508, 1172
MflI RGATCY 5 cut(s) 31, 55, 82, 586, 658
MluCI AATT 4 cut(s) 195, 429, 848, 997
MluI ACGCGT 1 cut(s) 973
MlyI GAGTC 1 cut(s) 1382
MmeI TCCRAC 3 cut(s) 9, 205, 506
Mph1103I ATGCAT 2 cut(s) 793, 918
MseI TTAA 8 cut(s) 204, 380, 678, 815, 1104, 1185, 1292, 1402
MspA1I CMGCKG 1 cut(s) 522
MspCI CTTAAG 1 cut(s) 1291
MspI CCGG 4 cut(s) 148, 320, 367, 861
MspR9I CCNGG 2 cut(s) 656, 1326
MssI GTTTAAAC 1 cut(s) 1105
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 2 cut(s) 656, 1326
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
NlaIII CATG 8 cut(s) 701, 712, 920, 1006, 1066, 1102, 1122, 1252
NlaIV GGNNCC 3 cut(s) 33, 1068, 1167
NmuCI GTSAC 2 cut(s) 809, 1376
NsiI ATGCAT 2 cut(s) 793, 918
NspI RCATGY 1 cut(s) 1122
PaeI GCATGC 1 cut(s) 1122
PagI TCATGA 2 cut(s) 708, 1002
PctI GAATGC 1 cut(s) 1222
PfeI GAWTC 4 cut(s) 144, 694, 1010, 1321
PfoI TCCNGGA 1 cut(s) 1324
PleI GAGTC 1 cut(s) 1382
PmeI GTTTAAAC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1382
Ppu21I YACGTR 1 cut(s) 1238
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 654, 1324
PspEI GGTNACC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 654, 1324
PspN4I GGNNCC 3 cut(s) 33, 1068, 1167
PspPI GGNCC 1 cut(s) 721
PsuI RGATCY 5 cut(s) 31, 55, 82, 586, 658
PvuII CAGCTG 1 cut(s) 522
RsaI GTAC 4 cut(s) 583, 649, 671, 1355
RsaNI GTAC 4 cut(s) 582, 648, 670, 1354
SaqAI TTAA 8 cut(s) 204, 380, 678, 815, 1104, 1185, 1292, 1402
Sau3AI GATC 9 cut(s) 31, 55, 82, 133, 548, 586, 622, 658, 888
Sau96I GGNCC 1 cut(s) 721
SchI GAGTC 1 cut(s) 1382
ScrFI CCNGG 2 cut(s) 656, 1326
SfaNI GCATC 4 cut(s) 338, 353, 622, 903
SfcI CTRYAG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 1291
SmoI CTYRAG 1 cut(s) 1291
SnaBI TACGTA 1 cut(s) 1238
SphI GCATGC 1 cut(s) 1122
Sse9I AATT 4 cut(s) 195, 429, 848, 997
SsiI CCGC 2 cut(s) 370, 702
SspMI CTAG 6 cut(s) 6, 362, 872, 935, 944, 1071
StyD4I CCNGG 2 cut(s) 654, 1324
StyI CCWWGG 2 cut(s) 871, 1070
TaaI ACNGT 5 cut(s) 49, 156, 802, 1136, 1224
TaiI ACGT 3 cut(s) 341, 1032, 1240
TaqI TCGA 3 cut(s) 630, 828, 1083
TasI AATT 4 cut(s) 195, 429, 848, 997
TatI WGTACW 3 cut(s) 581, 647, 1353
TfiI GAWTC 4 cut(s) 144, 694, 1010, 1321
Tru1I TTAA 8 cut(s) 204, 380, 678, 815, 1104, 1185, 1292, 1402
Tru9I TTAA 8 cut(s) 204, 380, 678, 815, 1104, 1185, 1292, 1402
TscAI CASTG 3 cut(s) 625, 805, 1227
TseFI GTSAC 2 cut(s) 809, 1376
Tsp45I GTSAC 2 cut(s) 809, 1376
TspDTI ATGAA 8 cut(s) 91, 686, 697, 725, 991, 1019, 1053, 1229
TspGWI ACGGA 3 cut(s) 369, 466, 569
TspRI CASTG 3 cut(s) 625, 805, 1227
Vha464I CTTAAG 1 cut(s) 1291
XapI RAATTY 2 cut(s) 848, 997
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 1122
XmaJI CCTAGG 2 cut(s) 871, 1070
XspI CTAG 6 cut(s) 6, 362, 872, 935, 944, 1071
Zsp2I ATGCAT 2 cut(s) 793, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.