Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005988

Physical Location & Seq

Genomic Coordinates Forward (+)

3562749 .. 3566928

Gene Structure 4180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGCCTAAGATTTATGGCCTCAATCCTAGGTGTCATGCCATGTCACCTGCACAAATCACCTATTTGCCAAATCATGCCATTACAGCCCATTTTACAGGTTACCAAGGAAGAGATTCAACACAGGCCTTCCTGTTCAAAGACACATTGTCTGACCCTAACTTGATTGTGGTGGCATTTAGAGGCACTGCTCCATTTGATGCGGATGCATGGAGGACAGATTTCGACATCTCATGGTGCGAGTTCAACAAAGTCGGTAAGACGCACGGCGGCTTCATGAAAGCTCTCGGCCTACAACCAAACAATCGTTGGCCACTTGAACTAGAAACTGATCAACTACAAGGCGGTCACCAACATCCTCAGTTTGCTTACTACACAATCAGACAAATGCTGAAAGATTTACTGCAAGAGGATGAGAATGCCAAGTTTATATTGACGGGGCACAGCTTGGGCGGGGCGTTGGCGATTTTGTTTGCCGGGGTGCTAGCAATGCATGACTGTGAGTATGCCTGGTTGCTGGAGAGGTTGGAGGGGGTTTACACGTTCGGACAGCCTAGGGCTGGAGATGGGAAGTTTGGGGTGTTTATGAAGGAAAAGTTTAGGAAATATGACGTGAGATACATGAGGTATGTTTACAGCAATGACCTGGTGCCTAGAATACCTTATGATGATAAAGCCCTCTTGTTCAAGCACTTTGGGCCAAGTCTTTACTACAACAGCTGCTATAGAGGAAAGGTTTTGAAGGAGGAACCCGACAAGAACTACTTTAGTTTGCTATGGTTCATACCTAAGAGGCTGAATGCAGTGTGGGAGCTGTTAAGGAGCTTCATACTCCCTTTGGTAAGGGGTTCAGACTACAAAGAGGGGTGGTTTATGAGATTTTGGAGGCTGGTGGGATTAGTAATTCCAGGATTGGCAGCCCATGCTCCTCAAGATTACGTCAATCTTACAAGATTGGGAACCCTGCTTAGTCCTAAAGAAAGTCCTAAAGTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005615 GO:0044421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

332

Amino Acids

38.31

Weight (kDa)

8.95

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	57 - 223	2.3e-30	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56630 AT5G42930 AT5G42930
fragaria_vesca	FvH4_2g34290
malus_domestica	MD15G1081200.v1.1 MD15G1081300.v1.1
prunus_persica	Prupe.1G434100_v2.0.a1 Prupe.1G434100_v2.0.a1 Prupe.1G434100_v2.0.a1
pyrus_communis	pycom15g07570 pycom15g07590 pycom15g07600
rosa_chinensis	RchiOBHm_Chr6g0308081
rosa_laevigata	RLG00000010669 RLG00000010670
rosa_multiflora	Rmu_sc0002624.1_g000005
rosa_roxburghii	Rroxscaffold_7G00160580 Rroxscaffold_7G00160590 Rroxscaffold_7G00160600
rosa_rugosa	Rorug06G0363600 Rorug06G0363900
rosa_samantha	Rh6AG472600 Rh6BG483700 Rh6CG488500 Rh6CG488600 Rh6DG475000
rosa_wichuraiana	Rw6G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	649
AciI	CCGC	4 cut(s)	203, 270, 345, 453
AcoI	YGGCCR	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	6 cut(s)	120, 139, 247, 320, 688, 742
AhdI	GACNNNNNGTC	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	613
AjnI	CCWGG	3 cut(s)	509, 645, 907
AluBI	AGCT	5 cut(s)	284, 447, 720, 814, 825
AluI	AGCT	5 cut(s)	284, 447, 720, 814, 825
AoxI	GGCC	6 cut(s)	5, 19, 126, 289, 311, 698
ApeKI	GCWGC	2 cut(s)	720, 917
Asp700I	GAANNNNTTC	1 cut(s)	115
AspA2I	CCTAGG	2 cut(s)	29, 554
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	3 cut(s)	39, 52, 341
AsuNHI	GCTAGC	1 cut(s)	484
AvrII	CCTAGG	2 cut(s)	29, 554
BaeGI	GKGCMC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	707, 929
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	3 cut(s)	511, 647, 909
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	478
BfaI	CTAG	5 cut(s)	30, 323, 485, 555, 654
BfmI	CTRYAG	1 cut(s)	724
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	271, 721, 918
BlnI	CCTAGG	2 cut(s)	29, 554
BlsI	GCNGC	3 cut(s)	272, 722, 919
Bme1390I	CCNGG	4 cut(s)	478, 511, 647, 909
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	3 cut(s)	651, 750, 961
BmrFI	CCNGG	4 cut(s)	478, 511, 647, 909
BmsI	GCATC	2 cut(s)	190, 196
BmtI	GCTAGC	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	539, 582
BpuEI	CTTGAG	1 cut(s)	915
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	4 cut(s)	29, 106, 477, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse3DI	GCAATG	2 cut(s)	495, 646
BseBI	CCWGG	3 cut(s)	511, 647, 909
BseDI	CCNNGG	4 cut(s)	29, 106, 477, 554
BseGI	GGATG	3 cut(s)	211, 355, 418
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMI	GCAATG	2 cut(s)	495, 646
BseMII	CTCAG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	918
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	707, 929
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	6 cut(s)	7, 21, 128, 291, 313, 700
BshNI	GGYRCC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmI	GAATGC	2 cut(s)	424, 805
BsnI	GGCC	6 cut(s)	7, 21, 128, 291, 313, 700
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	4 cut(s)	203, 270, 345, 453
BspANI	GGCC	6 cut(s)	7, 21, 128, 291, 313, 700
BspCNI	CTCAG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	3 cut(s)	651, 750, 961
BspMI	ACCTGC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	495, 646
BssECI	CCNNGG	4 cut(s)	29, 106, 477, 554
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	3 cut(s)	29, 106, 554
Bst2UI	CCWGG	3 cut(s)	511, 647, 909
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	4 cut(s)	9, 360, 789, 968
BstEII	GGTNACC	2 cut(s)	101, 347
BstF5I	GGATG	3 cut(s)	211, 355, 418
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 490, 697, 923
BstNI	CCWGG	3 cut(s)	511, 647, 909
BstPI	GGTNACC	2 cut(s)	101, 347
BstSCI	CCNGG	4 cut(s)	476, 509, 645, 907
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	707, 929
BsuRI	GGCC	6 cut(s)	7, 21, 128, 291, 313, 700
BtrI	CACGTC	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	211, 355, 418
BtsI	GCAGTG	2 cut(s)	186, 810
BtsIMutI	CAGTG	2 cut(s)	186, 810
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	486
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	645
CviAII	CATG	9 cut(s)	38, 43, 77, 210, 234, 277, 494, 622, 923
DdeI	CTNAG	4 cut(s)	9, 360, 789, 968
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	3 cut(s)	29, 106, 554
Eco147I	AGGCCT	2 cut(s)	7, 128
Eco91I	GGTNACC	2 cut(s)	101, 347
EcoO65I	GGTNACC	2 cut(s)	101, 347
EcoRII	CCWGG	3 cut(s)	509, 645, 907
EcoT14I	CCWWGG	3 cut(s)	29, 106, 554
EcoT22I	ATGCAT	2 cut(s)	211, 495
ErhI	CCWWGG	3 cut(s)	29, 106, 554
FaeI	CATG	9 cut(s)	41, 46, 80, 213, 237, 280, 497, 625, 926
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	9 cut(s)	37, 42, 76, 209, 233, 276, 493, 621, 922
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	271, 721, 918
FokI	GGATG	3 cut(s)	218, 342, 425
Fsp4HI	GCNGC	3 cut(s)	271, 721, 918
FspBI	CTAG	5 cut(s)	30, 323, 485, 555, 654
GluI	GCNGC	3 cut(s)	271, 721, 918
GsuI	CTGGAG	2 cut(s)	539, 582
HaeIII	GGCC	6 cut(s)	7, 21, 128, 291, 313, 700
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	271
Hin1II	CATG	9 cut(s)	41, 46, 80, 213, 237, 280, 497, 625, 926
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	39, 52, 341
Hpy166II	GTNNAC	2 cut(s)	538, 634
Hpy188I	TCNGA	4 cut(s)	154, 383, 548, 853
Hpy188III	TCNNGA	2 cut(s)	277, 932
Hpy8I	GTNNAC	2 cut(s)	538, 634
HpyAV	CCTTC	3 cut(s)	139, 583, 736
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	3 cut(s)	542, 612, 939
HpyCH4V	TGCA	5 cut(s)	53, 209, 406, 493, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 490, 697, 923
HpyF3I	CTNAG	4 cut(s)	9, 360, 789, 968
HpySE526I	ACGT	3 cut(s)	542, 612, 939
Hsp92II	CATG	9 cut(s)	41, 46, 80, 213, 237, 280, 497, 625, 926
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	4 cut(s)	196, 811, 822, 931
Lsp1109I	GCAGC	2 cut(s)	707, 929
LweI	GCATC	2 cut(s)	190, 196
MabI	ACCWGGT	1 cut(s)	645
MaeI	CTAG	5 cut(s)	30, 323, 485, 555, 654
MaeII	ACGT	3 cut(s)	542, 612, 939
MaeIII	GTNAC	3 cut(s)	45, 101, 347
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	903
MluNI	TGGCCA	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	2 cut(s)	211, 495
MroXI	GAANNNNTTC	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	1 cut(s)	818
MslI	CAYNNNNRTG	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	4 cut(s)	478, 511, 647, 909
Mva1269I	GAATGC	2 cut(s)	424, 805
MvaI	CCWGG	3 cut(s)	511, 647, 909
MwoI	GCNNNNNNNGC	4 cut(s)	86, 490, 697, 923
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	1 cut(s)	331
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	9 cut(s)	41, 46, 80, 213, 237, 280, 497, 625, 926
NlaIV	GGNNCC	3 cut(s)	651, 750, 961
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	45, 347
NsiI	ATGCAT	2 cut(s)	211, 495
PagI	TCATGA	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	58
PceI	AGGCCT	2 cut(s)	7, 128
PctI	GAATGC	2 cut(s)	424, 805
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	907
PkrI	GCNGC	3 cut(s)	272, 722, 919
Psp6I	CCWGG	3 cut(s)	509, 645, 907
PspEI	GGTNACC	2 cut(s)	101, 347
PspGI	CCWGG	3 cut(s)	509, 645, 907
PspN4I	GGNNCC	3 cut(s)	651, 750, 961
PspPI	GGNCC	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	720
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	3 cut(s)	271, 721, 918
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	698
ScrFI	CCNGG	4 cut(s)	478, 511, 647, 909
SduI	GDGCHC	1 cut(s)	444
SexAI	ACCWGGT	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	190, 196
SfcI	CTRYAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	930
SmoI	CTYRAG	1 cut(s)	930
Sse9I	AATT	1 cut(s)	903
SseBI	AGGCCT	2 cut(s)	7, 128
SsiI	CCGC	4 cut(s)	203, 270, 345, 453
SspMI	CTAG	5 cut(s)	30, 323, 485, 555, 654
StuI	AGGCCT	2 cut(s)	7, 128
StyD4I	CCNGG	4 cut(s)	476, 509, 645, 907
StyI	CCWWGG	3 cut(s)	29, 106, 554
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	3 cut(s)	545, 615, 942
TaqI	TCGA	2 cut(s)	225, 993
TasI	AATT	1 cut(s)	903
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	2 cut(s)	193, 810
TseFI	GTSAC	2 cut(s)	45, 347
TseI	GCWGC	2 cut(s)	720, 917
Tsp45I	GTSAC	2 cut(s)	45, 347
TspDTI	ATGAA	5 cut(s)	265, 293, 602, 772, 817
TspRI	CASTG	2 cut(s)	193, 810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XmaJI	CCTAGG	2 cut(s)	29, 554
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	5 cut(s)	30, 323, 485, 555, 654
Zsp2I	ATGCAT	2 cut(s)	211, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.