AT5G43100

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
17298814 .. 17303058
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43100.1

Sequence Viewer

Length: 1896 bp
ATGGATCGATCTTCCCTCCTCCTTCTCCTCTTTACCACCACCACCATCTCTATATTCTTCTTCGATCTAACCACCGCCGATGAATCGCCGATGATTTTCCCTCTTAGCTACTCTTCCTTACCACCGCGACCGCGAGTCGAGGATTTTCGCCGCCGTCGCCTTCATCAATCTCAGCTCCCTAACGCTCACATGAAACTCTACGATGACCTCCTCTCCAACGGCTACTACACTACACGATTATGGATTGGAACACCACCACAAGAGTTTGCTTTGATTGTTGATACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCAGGATCCAAAGTTTCAACCAGAGTTATCTACTAGTTACCAAGCTTTGAAGTGTAATCCTGATTGTAATTGTGATGATGAGGGGAAATTATGTGTCTACGAAAGAAGGTATGCGGAGATGAGTTCGAGTAGCGGGGTTTTGAGTGAGGATTTGATATCTTTTGGTAATGAGAGTCAACTTTCTCCGCAACGAGCTGTTTTCGGATGTGAGAATGAGGAGACTGGTGATCTTTTTAGCCAACGTGCTGATGGTATAATGGGGTTAGGTCGTGGTAAGCTTAGCGTTGTAGATCAGCTTGTCGATAAGGGTGTTATCGAGGATGTTTTTTCCTTGTGTTATGGAGGAATGGAAGTTGGTGGTGGTGCTATGGTTCTTGGTAAAATATCTCCTCCACCTGGAATGGTGTTTTCTCATTCTGATCCTTTCCGCAGTCCGTATTACAACATTGACCTGAAACAAATGCATGTTGCTGGAAAGTCTCTAAAGCTAAACCCAAAGGTCTTCAATGGAAAGCATGGAACCGTCTTGGATAGTGGAACAACATATGCTTATTTTCCCAAGGAAGCATTTATTGCCATTAAGGATGCGGTCATTAAGGAAATTCCATCTCTCAAACGGATCCATGGTCCAGACCCAAATTATGATGATGTTTGTTTCTCTGGCGCTGGAAGGGATGTGGCTGAGATACACAATTTTTTTCCTGAGATTGCTATGGAATTTGGAAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGGCACACTAAAGTTAGAGGCGCATACTGCCTTGGAATCTTTCCTGATAGGGATTCAACAACACTCCTAGGAGGAATTGTTGTTCGCAATACTCTTGTCACCTATGATCGTGAGAATGATAAGCTCGGGTTTCTGAAGACCAACTGTTCTGATATATGGAGGAGGCTGGCGGCACCAGAATCTCCTGCACCTACTTCACCAATATCCCAAAATAAAAGTTCTAACATTTCTCCAAGCCCTGCTACAAGCGAGTCTCCTACCTCTCATCTTCCAGGTGTTTTCCGGGTTGGAGTTATTACCTTCGAAGTATCAATTAGTGTGAACAATTCTTCATTGAAGCCCAAGTTCTCAGAGATCGCTGATTTCATTGCCCATGAGTTAGACATTCAAAGTGCACAGGTTCGCTTGCTGAATTTCTCGTCTAGTGGAAATGAGTATCGCCTGAAATGGGGAGTCTTTCCCCCACAATCTTCCGAGTACATTTCCAACACTACGGCATTGAACATAATGTTGCTTCTGAAAGAAAACCGGTTACGCCTACCTGGACAATTTGGAAGCTACAAGTTGCTAGAATGGAAAGCTGAGCAAAAGAAGAAACAGAGCTGGTGGGAGAAACACTTACTTGGTGTGGTGGGAGGAGCGATGATATCGTTGCTTGTTACTTCGGTGATGATCAAACTTGCATTGGTGTGGAGACGGCGAAAGCAAGAAGAAGCTACTTATGAGCCTGTAAATGCTGCTATTAAAGAACAAGAACTTCAGCCTCTCTCCTCTGAAACATCTAATGCCTGA

Protein Analysis

631

Amino Acids

70.29

Weight (kDa)

6.49

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 76 - 239 1.8e-36 Xylanase inhibitor N-terminal
Asp PF00026 76 - 412 1.4e-30 Eukaryotic aspartyl protease
TAXi_C PF14541 260 - 412 5.1e-26 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1276
AccI GTMKAC 1 cut(s) 435
AccII CGCG 2 cut(s) 127, 133
AclWI GGATC 6 cut(s) 12, 338, 351, 752, 952, 965
AcsI RAATTY 3 cut(s) 939, 1055, 1516
AcuI CTGAAG 2 cut(s) 1259, 1847
AfaI GTAC 2 cut(s) 292, 1583
AfiI CCNNNNNNNGG 2 cut(s) 734, 1552
AgeI ACCGGT 1 cut(s) 1632
AgsI TTSAA 7 cut(s) 356, 388, 844, 1161, 1441, 1493, 1606
AhdI GACNNNNNGTC 1 cut(s) 134
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 3 cut(s) 733, 1375, 1645
AloI GAACNNNNNNTCC 2 cut(s) 1170, 1202
Alw21I GWGCWC 1 cut(s) 1501
Alw26I GTCTC 4 cut(s) 551, 822, 1362, 1792
Alw44I GTGCAC 1 cut(s) 1497
AlwI GGATC 6 cut(s) 12, 338, 351, 752, 952, 965
AlwNI CAGNNNCTG 1 cut(s) 1075
Ama87I CYCGRG 2 cut(s) 1088, 1229
ApaLI GTGCAC 1 cut(s) 1497
ApeKI GCWGC 1 cut(s) 1841
ApoI RAATTY 3 cut(s) 939, 1055, 1516
AsiGI ACCGGT 1 cut(s) 1632
AspA2I CCTAGG 1 cut(s) 1171
AspLEI GCGC 2 cut(s) 1004, 1127
AspS9I GGNCC 1 cut(s) 965
AsuC2I CCSGG 1 cut(s) 1388
AsuHPI GGTGA 4 cut(s) 575, 1195, 1293, 1783
AsuII TTCGAA 1 cut(s) 1407
AvaI CYCGRG 2 cut(s) 1088, 1229
AvaII GGWCC 1 cut(s) 965
AvrII CCTAGG 1 cut(s) 1171
BaeGI GKGCMC 1 cut(s) 1501
BamHI GGATCC 2 cut(s) 343, 957
BanI GGYRCC 1 cut(s) 1276
BarI GAAGNNNNNNTAC 2 cut(s) 280, 312
BbsI GAAGAC 2 cut(s) 832, 1247
Bbv12I GWGCWC 1 cut(s) 1501
BbvI GCAGC 1 cut(s) 1828
BccI CCATC 3 cut(s) 53, 581, 952
BceAI ACGGC 4 cut(s) 138, 235, 1614, 1817
BciT130I CCWGG 3 cut(s) 735, 1377, 1647
BclI TGATCA 1 cut(s) 1776
BcnI CCSGG 1 cut(s) 1388
BcoDI GTCTC 4 cut(s) 551, 822, 1362, 1792
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 4 cut(s) 372, 1172, 1527, 1673
BfoI RGCGCY 1 cut(s) 1005
BisI GCNGC 3 cut(s) 151, 1275, 1842
BlnI CCTAGG 1 cut(s) 1171
BlpI GCTNAGC 2 cut(s) 617, 1686
BlsI GCNGC 3 cut(s) 152, 1276, 1843
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 4 cut(s) 735, 1377, 1388, 1647
Bme18I GGWCC 1 cut(s) 965
BmeRI GACNNNNNGTC 1 cut(s) 134
BmeT110I CYCGRG 2 cut(s) 1088, 1229
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 4 cut(s) 345, 859, 959, 1278
BmrFI CCNGG 4 cut(s) 735, 1377, 1388, 1647
BmsI GCATC 2 cut(s) 346, 913
BpiI GAAGAC 2 cut(s) 832, 1247
Bpu1102I GCTNAGC 2 cut(s) 617, 1686
Bpu14I TTCGAA 1 cut(s) 1407
BpuMI CCSGG 1 cut(s) 1388
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 4 cut(s) 897, 961, 1135, 1171
BsaWI WCCGGW 1 cut(s) 1632
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 1167, 1197
Bsc4I CCNNNNNNNGG 2 cut(s) 734, 1552
Bse118I RCCGGY 1 cut(s) 1632
Bse1I ACTGG 2 cut(s) 289, 565
Bse3DI GCAATG 1 cut(s) 1470
BseBI CCWGG 3 cut(s) 735, 1377, 1647
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 4 cut(s) 897, 961, 1135, 1171
BseGI GGATG 4 cut(s) 548, 664, 928, 1018
BseLI CCNNNNNNNGG 2 cut(s) 734, 1552
BseMI GCAATG 1 cut(s) 1470
BseMII CTCAG 5 cut(s) 185, 1011, 1032, 1467, 1677
BseNI ACTGG 2 cut(s) 289, 565
BseRI GAGGAG 8 cut(s) 8, 17, 200, 569, 717, 1279, 1755, 1864
BseSI GKGCMC 1 cut(s) 1501
BseXI GCAGC 1 cut(s) 1828
BsgI GTGCAG 1 cut(s) 1275
Bsh1236I CGCG 2 cut(s) 127, 133
Bsh1285I CGRYCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 1276
BshTI ACCGGT 1 cut(s) 1632
BshVI ATCGAT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 1501
BsiHKCI CYCGRG 2 cut(s) 1088, 1229
BsiSI CCGG 2 cut(s) 1387, 1633
BslI CCNNNNNNNGG 2 cut(s) 734, 1552
BsmAI GTCTC 4 cut(s) 551, 822, 1362, 1792
BsmBI CGTCTC 1 cut(s) 1792
BsoBI CYCGRG 2 cut(s) 1088, 1229
Bsp119I TTCGAA 1 cut(s) 1407
Bsp1286I GDGCHC 1 cut(s) 1501
Bsp1720I GCTNAGC 2 cut(s) 617, 1686
Bsp19I CCATGG 1 cut(s) 961
BspCNI CTCAG 5 cut(s) 184, 1012, 1033, 1466, 1678
BspDI ATCGAT 1 cut(s) 7
BspFNI CGCG 2 cut(s) 127, 133
BspLI GGNNCC 4 cut(s) 345, 859, 959, 1278
BspPI GGATC 6 cut(s) 12, 338, 351, 752, 952, 965
BspT104I TTCGAA 1 cut(s) 1407
BspT107I GGYRCC 1 cut(s) 1276
BsrDI GCAATG 1 cut(s) 1470
BsrFI RCCGGY 1 cut(s) 1632
BsrI ACTGG 2 cut(s) 289, 565
BssAI RCCGGY 1 cut(s) 1632
BssECI CCNNGG 4 cut(s) 897, 961, 1135, 1171
BssT1I CCWWGG 4 cut(s) 897, 961, 1135, 1171
Bst2UI CCWGG 3 cut(s) 735, 1377, 1647
Bst4CI ACNGT 4 cut(s) 295, 327, 862, 1250
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 1407
BstC8I GCNNGC 2 cut(s) 1272, 1511
BstDEI CTNAG 7 cut(s) 104, 171, 617, 1020, 1041, 1453, 1686
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 4 cut(s) 548, 664, 928, 1018
BstFNI CGCG 2 cut(s) 127, 133
BstH2I RGCGCY 1 cut(s) 1005
BstHHI GCGC 2 cut(s) 1004, 1127
BstMAI GTCTC 4 cut(s) 551, 822, 1362, 1792
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 3 cut(s) 156, 911, 1131
BstNI CCWGG 3 cut(s) 735, 1377, 1647
BstNSI RCATGY 1 cut(s) 806
BstSCI CCNGG 4 cut(s) 733, 1375, 1386, 1645
BstSLI GKGCMC 1 cut(s) 1501
BstUI CGCG 2 cut(s) 127, 133
BstV1I GCAGC 1 cut(s) 1828
BstV2I GAAGAC 2 cut(s) 832, 1247
BstX2I RGATCY 2 cut(s) 343, 957
BstYI RGATCY 2 cut(s) 343, 957
Bsu15I ATCGAT 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 961
BtgZI GCGATG 1 cut(s) 1760
BtsCI GGATG 4 cut(s) 548, 664, 928, 1018
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 2 cut(s) 1272, 1511
CaiI CAGNNNCTG 1 cut(s) 1075
CfoI GCGC 2 cut(s) 1004, 1127
Cfr10I RCCGGY 1 cut(s) 1632
Cfr13I GGNCC 1 cut(s) 965
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 291, 1582
CspAI ACCGGT 1 cut(s) 1632
CviAII CATG 5 cut(s) 190, 803, 854, 962, 1478
CviQI GTAC 2 cut(s) 291, 1582
DdeI CTNAG 7 cut(s) 104, 171, 617, 1020, 1041, 1453, 1686
DriI GACNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 118
Eam1105I GACNNNNNGTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 4 cut(s) 897, 961, 1135, 1171
Eco32I GATATC 2 cut(s) 495, 1752
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 2 cut(s) 1259, 1847
Eco88I CYCGRG 2 cut(s) 1088, 1229
EcoRII CCWGG 3 cut(s) 733, 1375, 1645
EcoRV GATATC 2 cut(s) 495, 1752
EcoT14I CCWWGG 4 cut(s) 897, 961, 1135, 1171
EcoT22I ATGCAT 1 cut(s) 804
ErhI CCWWGG 4 cut(s) 897, 961, 1135, 1171
Esp3I CGTCTC 1 cut(s) 1792
FaeI CATG 5 cut(s) 193, 806, 857, 965, 1481
FatI CATG 5 cut(s) 189, 802, 853, 961, 1477
FauI CCCGC 1 cut(s) 464
FauNDI CATATG 1 cut(s) 883
FbaI TGATCA 1 cut(s) 1776
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 151, 1275, 1842
FokI GGATG 4 cut(s) 555, 671, 935, 1025
Fsp4HI GCNGC 3 cut(s) 151, 1275, 1842
FspBI CTAG 4 cut(s) 372, 1172, 1527, 1673
GlaI GCGC 2 cut(s) 1003, 1126
GluI GCNGC 3 cut(s) 151, 1275, 1842
HaeII RGCGCY 1 cut(s) 1005
HapII CCGG 2 cut(s) 1387, 1633
HhaI GCGC 2 cut(s) 1004, 1127
Hin1II CATG 5 cut(s) 193, 806, 857, 965, 1481
Hin6I GCGC 2 cut(s) 1002, 1125
HinP1I GCGC 2 cut(s) 1002, 1125
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HindIII AAGCTT 2 cut(s) 381, 614
HinfI GANTC 9 cut(s) 83, 135, 511, 1078, 1140, 1157, 1283, 1355, 1557
HpaII CCGG 2 cut(s) 1387, 1633
HphI GGTGA 4 cut(s) 575, 1195, 1293, 1783
Hpy166II GTNNAC 5 cut(s) 323, 436, 515, 1426, 1499
Hpy188I TCNGA 9 cut(s) 542, 757, 1071, 1239, 1255, 1456, 1579, 1623, 1879
Hpy188III TCNNGA 7 cut(s) 341, 398, 968, 1040, 1088, 1148, 1214
Hpy8I GTNNAC 5 cut(s) 323, 436, 515, 1426, 1499
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 5 cut(s) 32, 170, 438, 1002, 1414
HpyCH4III ACNGT 4 cut(s) 295, 327, 862, 1250
HpyCH4IV ACGT 2 cut(s) 303, 580
HpyCH4V TGCA 4 cut(s) 802, 1292, 1499, 1787
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 911, 1131
HpyF3I CTNAG 7 cut(s) 104, 171, 617, 1020, 1041, 1453, 1686
HpySE526I ACGT 2 cut(s) 303, 580
Hsp92II CATG 5 cut(s) 193, 806, 857, 965, 1481
HspAI GCGC 2 cut(s) 1002, 1125
Ksp22I TGATCA 1 cut(s) 1776
LmnI GCTCC 2 cut(s) 180, 1742
Lsp1109I GCAGC 1 cut(s) 1828
LweI GCATC 2 cut(s) 346, 913
MaeI CTAG 4 cut(s) 372, 1172, 1527, 1673
MaeII ACGT 2 cut(s) 303, 580
MaeIII GTNAC 5 cut(s) 295, 374, 1201, 1635, 1762
MflI RGATCY 2 cut(s) 343, 957
MhlI GDGCHC 1 cut(s) 1501
MlyI GAGTC 4 cut(s) 144, 520, 1364, 1566
MmeI TCCRAC 3 cut(s) 240, 1372, 1614
Mph1103I ATGCAT 1 cut(s) 804
MseI TTAA 3 cut(s) 918, 933, 1848
MslI CAYNNNNRTG 2 cut(s) 238, 1792
MspI CCGG 2 cut(s) 1387, 1633
MspR9I CCNGG 4 cut(s) 735, 1377, 1388, 1647
MvaI CCWGG 3 cut(s) 735, 1377, 1647
MvnI CGCG 2 cut(s) 127, 133
MwoI GCNNNNNNNGC 3 cut(s) 156, 911, 1131
NciI CCSGG 1 cut(s) 1388
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 1 cut(s) 883
NlaIII CATG 5 cut(s) 193, 806, 857, 965, 1481
NlaIV GGNNCC 4 cut(s) 345, 859, 959, 1278
NmuCI GTSAC 1 cut(s) 1201
NsiI ATGCAT 1 cut(s) 804
NspI RCATGY 1 cut(s) 806
NspV TTCGAA 1 cut(s) 1407
PfeI GAWTC 5 cut(s) 83, 1078, 1140, 1157, 1283
PinAI ACCGGT 1 cut(s) 1632
PkrI GCNGC 3 cut(s) 152, 1276, 1843
PleI GAGTC 4 cut(s) 143, 519, 1363, 1565
PpsI GAGTC 4 cut(s) 143, 519, 1363, 1565
Psp6I CCWGG 3 cut(s) 733, 1375, 1645
PspGI CCWGG 3 cut(s) 733, 1375, 1645
PspN4I GGNNCC 4 cut(s) 345, 859, 959, 1278
PspPI GGNCC 1 cut(s) 965
PstNI CAGNNNCTG 1 cut(s) 1075
PsuI RGATCY 2 cut(s) 343, 957
RsaI GTAC 2 cut(s) 292, 1583
RsaNI GTAC 2 cut(s) 291, 1582
RseI CAYNNNNRTG 2 cut(s) 238, 1792
SaqAI TTAA 3 cut(s) 918, 933, 1848
SatI GCNGC 3 cut(s) 151, 1275, 1842
Sau96I GGNCC 1 cut(s) 965
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 4 cut(s) 144, 520, 1364, 1566
ScrFI CCNGG 4 cut(s) 735, 1377, 1388, 1647
SduI GDGCHC 1 cut(s) 1501
SfaNI GCATC 2 cut(s) 346, 913
SfuI TTCGAA 1 cut(s) 1407
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 2 cut(s) 238, 1792
SpeI ACTAGT 1 cut(s) 371
SspMI CTAG 4 cut(s) 372, 1172, 1527, 1673
StyD4I CCNGG 4 cut(s) 733, 1375, 1386, 1645
StyI CCWWGG 4 cut(s) 897, 961, 1135, 1171
TaaI ACNGT 4 cut(s) 295, 327, 862, 1250
TaiI ACGT 2 cut(s) 306, 583
TaqI TCGA 7 cut(s) 7, 63, 138, 464, 639, 654, 1407
TatI WGTACW 2 cut(s) 290, 1581
TauI GCSGC 2 cut(s) 153, 1277
TfiI GAWTC 5 cut(s) 83, 1078, 1140, 1157, 1283
Tru1I TTAA 3 cut(s) 918, 933, 1848
Tru9I TTAA 3 cut(s) 918, 933, 1848
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 1 cut(s) 1201
TseI GCWGC 1 cut(s) 1841
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 5 cut(s) 96, 152, 206, 1425, 1459
TspGWI ACGGA 2 cut(s) 762, 970
TspRI CASTG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 1497
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 3 cut(s) 939, 1055, 1516
XceI RCATGY 1 cut(s) 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmaJI CCTAGG 1 cut(s) 1171
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 4 cut(s) 372, 1172, 1527, 1673
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.