Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008275

Physical Location & Seq

Genomic Coordinates Reverse (-)

5843306 .. 5843780

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGTGCTAGTACCTTTATATTAATTACTGTCTGCTGGTATGTCTTCATATTACTTTGCTTGTATATCTTCGGTTACTTTACTAACCACAACACTAACTCTTCTCAGGTTCGCTTCATGAACTACACCCATATGGGAAGTGATTTCGTTGTTAGATGGACAATCTTCCCTGCTGATCCTGCAACTTGCTTTTCTGCTGCGAAAGCGATCGGCATGATTCTGCGCTTAAAGGAACATCATATGCAGCTTCCTCAGAAATTTGGAAGTTATCAGTTGGTCAAAGTGAAGGCTGAGCCTCGAAAGAAGCGGTATGCTACTTCACCCGGCATTCTTTTCACTGGAATGGAGTATCTGGTTTTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

123

Amino Acids

14.17

Weight (kDa)

9.55

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43100 AT5G43100
fragaria_vesca	FvH4_2g33420
malus_domestica	MD08G1089200.v1.1 MD08G1089400.v1.1 MD15G1074000.v1.1
prunus_persica	Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1
pyrus_communis	pycom08g07250 pycom08g07270 pycom15g06910
rosa_chinensis	RchiOBHm_Chr6g0309111
rosa_laevigata	RLG00000010588
rosa_roxburghii	Rroxscaffold_7G00159640
rosa_rugosa	Rorug06G0369800
rosa_samantha	Rh6AG482600 Rh6BG491600 Rh6BG491700 Rh6CG496400 Rh6DG483300
rosa_wichuraiana	Rw6G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	257, 363
AfaI	GTAC	1 cut(s)	13
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AlwI	GGATC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	197, 244
ApoI	RAATTY	2 cut(s)	257, 363
AseI	ATTAAT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	184, 256
BccI	CCATC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	2 cut(s)	198, 245
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	2 cut(s)	199, 246
Bme1390I	CCNGG	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	119, 266, 282
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	184, 256
Bsh1285I	CGRYCG	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	175, 207
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	307
BspCNI	CTCAG	3 cut(s)	118, 265, 283
BspHI	TCATGA	1 cut(s)	117
BspPI	GGATC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	175, 207
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	105, 252, 291
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	178, 210
BstMBI	GATC	2 cut(s)	175, 207
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 203
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	184, 256
BstV2I	GAAGAC	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	118, 214
CviJI	RGCY	3 cut(s)	247, 290, 295
CviKI_1	RGCY	3 cut(s)	247, 290, 295
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	3 cut(s)	105, 252, 291
DpnI	GATC	2 cut(s)	177, 209
DpnII	GATC	2 cut(s)	175, 207
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	121, 217
FatI	CATG	2 cut(s)	117, 213
FauNDI	CATATG	2 cut(s)	132, 240
Fnu4HI	GCNGC	2 cut(s)	198, 245
Fsp4HI	GCNGC	2 cut(s)	198, 245
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	198, 245
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	121, 217
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	182, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 203
HpyF3I	CTNAG	3 cut(s)	105, 252, 291
Hsp92II	CATG	2 cut(s)	121, 217
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	175, 207
LpnPI	CCDG	7 cut(s)	22, 92, 183, 192, 324, 337, 338
Lsp1109I	GCAGC	2 cut(s)	184, 256
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	177, 209
MboI	GATC	2 cut(s)	175, 207
MboII	GAAGA	4 cut(s)	37, 61, 93, 157
MluCI	AATT	3 cut(s)	24, 257, 363
MnlI	CCTC	2 cut(s)	261, 306
MseI	TTAA	2 cut(s)	23, 227
MslI	CAYNNNNRTG	2 cut(s)	131, 341
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	179, 203
NciI	CCSGG	1 cut(s)	324
NdeI	CATATG	2 cut(s)	132, 240
NdeII	GATC	2 cut(s)	175, 207
NlaIII	CATG	2 cut(s)	121, 217
PagI	TCATGA	1 cut(s)	117
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	199, 246
Ple19I	CGATCG	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	210
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	2 cut(s)	131, 341
SaqAI	TTAA	2 cut(s)	23, 227
SatI	GCNGC	2 cut(s)	198, 245
Sau3AI	GATC	2 cut(s)	175, 207
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	3 cut(s)	17, 111, 249
SmiMI	CAYNNNNRTG	2 cut(s)	131, 341
Sse9I	AATT	3 cut(s)	24, 257, 363
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	298
TasI	AATT	3 cut(s)	24, 257, 363
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	23, 227
Tru9I	TTAA	2 cut(s)	23, 227
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	2 cut(s)	197, 244
TspDTI	ATGAA	3 cut(s)	37, 106, 134
TspRI	CASTG	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	23
XapI	RAATTY	2 cut(s)	257, 363
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.