Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008275

Physical Location & Seq

Genomic Coordinates Forward (+)

69481506 .. 69483387

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG491600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTCCTCGGAGGTTGGTGGTCCTCCTCCTAATTTACTCCGTCCTACTCAATTTTTGTGGCGCGTTTGCTTCAACCGCCGATGATCAACGCCGTCCGATGATCCTTCCTCTCCATCTCTCCTCCCCCGACGACCACCGGCGAGCCTTCGACGGTCGGCGTCTCCAGAGATCGGAGCCGAACGCGCACATGAGGCTCCACGATGATCTCCTTACCAACGGGTACTACACGACGCGGCTGTGGATTGGGACACCACCTCAGATGTTCGCTCTGATTGTGGATACGGGGAGTACTGTCACTTATGTGCCTTGCTCTGACTGTGAAGCCTGCGGTAACCATCAGGACCCTAGGTTTCAACCCGATTTATCTAGCACGTACCAACCTGTAAAGTGTAATATCAATTGCAACTGTGACGATAAAGGAAACCAATGCACTTATGAGAGGCGCTATGCTGAGCAGAGCTCCAGCAGTGGTGTGCTTGGTGAGGATGTCATTTCTTTTGGCAATGAGAGTGCACTTGTGCCCCAGCGTGCTGTTTTTGGTTGCGAGAATATTGAAACCGGTGATCTTTACAGCCAACGTGCCGATGGCATAATGGGCTTGGGCCGTGGTCAGCTTAGCGTCATGGACCAGCTTGTTGATAAGGGTGTTATTAGTGATTCATTTTCATTGTGTTATGGAGGAATGGGTGTAGGTGGGGGTGCTATGGTTCTAGGTGGGATTAAATCCCCCCCGGATATGGTATTTACCCATTCTGATCCCTTTCGCAGTCCATATTACAATATTGAACTGAAGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTAAACCCGAAGGTGTTTGATGAAAAGCATGGAACTGTCTTGGATAGTGGAACGACATATGCATACTTTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTATTATGAAGGAAACTCATTTCCTCAAACAAGTCCATGGTCCTGACCCAAATTATAAAGATATCTGTTTTTCAGGTGCTGGAAGGGATGTCACCCAACTATCAAAAGTTTTTCCACAGGTTGATATGATATTCAGCAAGGGACAGAAGTTTTCACTGTCTCCCGAGAACTATTTGTTTCCGGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

371

Amino Acids

41.1

Weight (kDa)

5.93

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	76 - 240	4.5e-37	Xylanase inhibitor N-terminal
Asp	PF00026	76 - 368	5.6e-26	Eukaryotic aspartyl protease
TAXi_C	PF14541	260 - 369	7.9e-18	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43100 AT5G43100
fragaria_vesca	FvH4_2g33420
malus_domestica	MD08G1089200.v1.1 MD08G1089400.v1.1 MD15G1074000.v1.1
prunus_persica	Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1
pyrus_communis	pycom08g07250 pycom08g07270 pycom15g06910
rosa_chinensis	RchiOBHm_Chr6g0309111
rosa_laevigata	RLG00000010588
rosa_roxburghii	Rroxscaffold_7G00159640
rosa_rugosa	Rorug06G0369800
rosa_samantha	Rh6AG482600 Rh6BG491600 Rh6BG491700 Rh6CG496400 Rh6DG483300
rosa_wichuraiana	Rw6G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	981
AccII	CGCG	3 cut(s)	65, 185, 235
AciI	CCGC	3 cut(s)	78, 235, 330
AclWI	GGATC	2 cut(s)	97, 752
AcuI	CTGAAG	1 cut(s)	812
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	3 cut(s)	224, 292, 377
AfiI	CCNNNNNNNGG	2 cut(s)	172, 739
AflIII	ACRYGT	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	5 cut(s)	75, 356, 557, 788, 823
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	3 cut(s)	462, 616, 634
AluI	AGCT	3 cut(s)	462, 616, 634
Alw21I	GWGCWC	2 cut(s)	464, 517
Alw26I	GTCTC	2 cut(s)	167, 1089
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	97, 752
AlwNI	CAGNNNCTG	1 cut(s)	1004
Ama87I	CYCGRG	1 cut(s)	1088
AoxI	GGCC	1 cut(s)	604
ApaLI	GTGCAC	1 cut(s)	513
AsiGI	ACCGGT	1 cut(s)	560
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	3 cut(s)	65, 187, 447
AspS9I	GGNCC	5 cut(s)	22, 343, 604, 628, 965
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	3 cut(s)	494, 575, 1009
AvaI	CYCGRG	1 cut(s)	1088
AvaII	GGWCC	4 cut(s)	22, 343, 628, 965
AvrII	CCTAGG	1 cut(s)	347
BaeGI	GKGCMC	2 cut(s)	517, 525
BanII	GRGCYC	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	464, 517
BccI	CCATC	3 cut(s)	123, 345, 581
BceAI	ACGGC	2 cut(s)	78, 591
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	167, 1089
BfaI	CTAG	3 cut(s)	348, 369, 713
BfoI	RGCGCY	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	1 cut(s)	236
BlnI	CCTAGG	1 cut(s)	347
BlpI	GCTNAGC	2 cut(s)	453, 617
BlsI	GCNGC	1 cut(s)	237
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	4 cut(s)	22, 343, 628, 965
BmeT110I	CYCGRG	1 cut(s)	1088
BmgT120I	GGNCC	5 cut(s)	22, 343, 604, 628, 965
BmiI	GGNNCC	4 cut(s)	6, 177, 197, 345
BmrFI	CCNGG	1 cut(s)	734
BmsI	GCATC	2 cut(s)	892, 913
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	2 cut(s)	149, 448
Bpu1102I	GCTNAGC	2 cut(s)	453, 617
BpuMI	CCSGG	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	5 cut(s)	8, 347, 607, 732, 961
BsaWI	WCCGGW	2 cut(s)	560, 1105
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 739
Bse118I	RCCGGY	2 cut(s)	138, 560
Bse3DI	GCAATG	1 cut(s)	511
BseDI	CCNNGG	5 cut(s)	8, 347, 607, 732, 961
BseGI	GGATG	4 cut(s)	493, 907, 928, 1018
BseLI	CCNNNNNNNGG	2 cut(s)	172, 739
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	272, 444
BseRI	GAGGAG	2 cut(s)	17, 112
BseSI	GKGCMC	2 cut(s)	517, 525
BseYI	CCCAGC	1 cut(s)	525
Bsh1236I	CGCG	3 cut(s)	65, 185, 235
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	606
BshTI	ACCGGT	1 cut(s)	560
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	464, 517
BsiHKCI	CYCGRG	1 cut(s)	1088
BsiSI	CCGG	4 cut(s)	139, 561, 734, 1106
BslFI	GGGAC	2 cut(s)	262, 1080
BslI	CCNNNNNNNGG	2 cut(s)	172, 739
BsmAI	GTCTC	2 cut(s)	167, 1089
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	262, 1080
BsnI	GGCC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	1088
Bsp1286I	GDGCHC	3 cut(s)	464, 517, 525
Bsp143I	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
Bsp1720I	GCTNAGC	2 cut(s)	453, 617
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	3 cut(s)	78, 235, 330
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	2 cut(s)	271, 445
BspFNI	CGCG	3 cut(s)	65, 185, 235
BspLI	GGNNCC	4 cut(s)	6, 177, 197, 345
BspPI	GGATC	2 cut(s)	97, 752
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	138, 560
BssAI	RCCGGY	2 cut(s)	138, 560
BssECI	CCNNGG	5 cut(s)	8, 347, 607, 732, 961
BssMI	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	347, 961
Bst4CI	ACNGT	6 cut(s)	155, 295, 320, 410, 862, 1083
BstACI	GRCGYC	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	375
BstC8I	GCNNGC	3 cut(s)	144, 328, 531
BstDEI	CTNAG	3 cut(s)	258, 453, 617
BstDSI	CCRYGG	2 cut(s)	607, 961
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	4 cut(s)	493, 907, 928, 1018
BstFNI	CGCG	3 cut(s)	65, 185, 235
BstH2I	RGCGCY	1 cut(s)	448
BstHHI	GCGC	3 cut(s)	65, 187, 447
BstKTI	GATC	6 cut(s)	88, 105, 173, 208, 568, 760
BstMAI	GTCTC	2 cut(s)	167, 1089
BstMBI	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 184, 193, 597, 815, 911
BstNSI	RCATGY	1 cut(s)	806
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	732
BstSLI	GKGCMC	2 cut(s)	517, 525
BstUI	CGCG	3 cut(s)	65, 185, 235
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	606
BtgI	CCRYGG	2 cut(s)	607, 961
BtsCI	GGATG	4 cut(s)	493, 907, 928, 1018
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	2 cut(s)	475, 1079
Cac8I	GCNNGC	3 cut(s)	144, 328, 531
CaiI	CAGNNNCTG	1 cut(s)	1004
CfoI	GCGC	3 cut(s)	65, 187, 447
Cfr10I	RCCGGY	2 cut(s)	138, 560
Cfr13I	GGNCC	5 cut(s)	22, 343, 604, 628, 965
CseI	GACGC	3 cut(s)	149, 241, 610
Csp6I	GTAC	3 cut(s)	223, 291, 376
CspAI	ACCGGT	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	5 cut(s)	190, 625, 803, 854, 962
CviQI	GTAC	3 cut(s)	223, 291, 376
DdeI	CTNAG	3 cut(s)	258, 453, 617
DpnI	GATC	6 cut(s)	87, 104, 172, 207, 567, 759
DpnII	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	347, 961
Eco24I	GRGCYC	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	4 cut(s)	22, 343, 628, 965
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	1088
Eco91I	GGTNACC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	2 cut(s)	347, 961
EcoT22I	ATGCAT	1 cut(s)	889
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	2 cut(s)	347, 961
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	5 cut(s)	193, 628, 806, 857, 965
FaqI	GGGAC	2 cut(s)	262, 1080
FatI	CATG	5 cut(s)	189, 624, 802, 853, 961
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	4 cut(s)	500, 914, 935, 1025
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	3 cut(s)	348, 369, 713
GlaI	GCGC	3 cut(s)	64, 186, 446
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	2 cut(s)	149, 448
HaeII	RGCGCY	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	4 cut(s)	139, 561, 734, 1106
HgaI	GACGC	3 cut(s)	149, 241, 610
HhaI	GCGC	3 cut(s)	65, 187, 447
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	193, 628, 806, 857, 965
Hin6I	GCGC	3 cut(s)	63, 185, 445
HinP1I	GCGC	3 cut(s)	63, 185, 445
HinfI	GANTC	1 cut(s)	659
HpaII	CCGG	4 cut(s)	139, 561, 734, 1106
HphI	GGTGA	3 cut(s)	494, 575, 1009
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	7 cut(s)	12, 99, 175, 261, 273, 316, 757
Hpy188III	TCNNGA	4 cut(s)	166, 341, 968, 1088
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	3 cut(s)	134, 155, 235
HpyAV	CCTTC	6 cut(s)	116, 157, 787, 829, 928, 1002
HpyCH4III	ACNGT	6 cut(s)	155, 295, 320, 410, 862, 1083
HpyCH4IV	ACGT	2 cut(s)	374, 580
HpyCH4V	TGCA	5 cut(s)	405, 432, 515, 887, 914
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 184, 193, 597, 815, 911
HpyF3I	CTNAG	3 cut(s)	258, 453, 617
HpySE526I	ACGT	2 cut(s)	374, 580
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	5 cut(s)	193, 628, 806, 857, 965
HspAI	GCGC	3 cut(s)	63, 185, 445
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
LmnI	GCTCC	4 cut(s)	10, 175, 201, 467
LweI	GCATC	2 cut(s)	892, 913
MaeI	CTAG	3 cut(s)	348, 369, 713
MaeII	ACGT	2 cut(s)	374, 580
MaeIII	GTNAC	4 cut(s)	295, 332, 410, 1015
MalI	GATC	6 cut(s)	87, 104, 172, 207, 567, 759
MboI	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	3 cut(s)	464, 517, 525
MluCI	AATT	5 cut(s)	33, 52, 400, 976, 1110
Mph1103I	ATGCAT	1 cut(s)	889
MseI	TTAA	3 cut(s)	723, 827, 918
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	4 cut(s)	139, 561, 734, 1106
MspR9I	CCNGG	1 cut(s)	734
MunI	CAATTG	1 cut(s)	400
MvnI	CGCG	3 cut(s)	65, 185, 235
MwoI	GCNNNNNNNGC	6 cut(s)	77, 184, 193, 597, 815, 911
NciI	CCSGG	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	961
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
NlaIII	CATG	5 cut(s)	193, 628, 806, 857, 965
NlaIV	GGNNCC	4 cut(s)	6, 177, 197, 345
NmuCI	GTSAC	3 cut(s)	295, 410, 1015
NsiI	ATGCAT	1 cut(s)	889
NspI	RCATGY	1 cut(s)	806
OliI	CACNNNNGTG	1 cut(s)	302
PciI	ACATGT	1 cut(s)	802
PfeI	GAWTC	1 cut(s)	659
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	375
PpuMI	RGGWCCY	1 cut(s)	343
PscI	ACATGT	1 cut(s)	802
PsiI	TTATAA	1 cut(s)	981
Psp124BI	GAGCTC	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	343
PspEI	GGTNACC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	525
PspN4I	GGNNCC	4 cut(s)	6, 177, 197, 345
PspPI	GGNCC	5 cut(s)	22, 343, 604, 628, 965
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	1004
RsaI	GTAC	3 cut(s)	224, 292, 377
RsaNI	GTAC	3 cut(s)	223, 291, 376
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	723, 827, 918
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	6 cut(s)	85, 102, 170, 205, 565, 757
Sau96I	GGNCC	5 cut(s)	22, 343, 604, 628, 965
ScaI	AGTACT	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	734
SduI	GDGCHC	3 cut(s)	464, 517, 525
SfaNI	GCATC	2 cut(s)	892, 913
SgrAI	CRCCGGYG	1 cut(s)	138
SinI	GGWCC	4 cut(s)	22, 343, 628, 965
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	5 cut(s)	33, 52, 400, 976, 1110
SsiI	CCGC	3 cut(s)	78, 235, 330
SspI	AATATT	2 cut(s)	553, 784
SspMI	CTAG	3 cut(s)	348, 369, 713
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	2 cut(s)	347, 961
TaaI	ACNGT	6 cut(s)	155, 295, 320, 410, 862, 1083
TaiI	ACGT	2 cut(s)	377, 583
TaqI	TCGA	1 cut(s)	150
TasI	AATT	5 cut(s)	33, 52, 400, 976, 1110
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	3 cut(s)	723, 827, 918
Tru9I	TTAA	3 cut(s)	723, 827, 918
TscAI	CASTG	2 cut(s)	475, 1086
TseFI	GTSAC	3 cut(s)	295, 410, 1015
Tsp45I	GTSAC	3 cut(s)	295, 410, 1015
TspDTI	ATGAA	4 cut(s)	651, 657, 861, 947
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	475, 1086
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	4 cut(s)	22, 343, 628, 965
XceI	RCATGY	1 cut(s)	806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	3 cut(s)	348, 369, 713
ZrmI	AGTACT	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.