Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008275

Physical Location & Seq

Genomic Coordinates Reverse (-)

7383729 .. 7384125

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1089200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAACTACACCCATATGGGAAATGATTTCGTTGTTAGATGGACAATCTTCCCTGCTGATCCTGCAACTTGCTTTTCTGCTGCGAAAGCAATGGTTATAGGCATGATTCTGCGCTTAAAGGAACATCATATGCAGCTTCCTCAGAAATTTGGAAGTTATCAGTTGGTCAAAGTGAAGGCTGAGCCTCGAAAGAAGCGGTATGCTACTTCAGCCGGCATTCTTTTCACTGGAATGAAGTATCTGGTTTTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

86

Amino Acids

9.74

Weight (kDa)

9.87

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43100 AT5G43100
fragaria_vesca	FvH4_2g33420
malus_domestica	MD08G1089200.v1.1 MD08G1089400.v1.1 MD15G1074000.v1.1
prunus_persica	Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1
pyrus_communis	pycom08g07250 pycom08g07270 pycom15g06910
rosa_chinensis	RchiOBHm_Chr6g0309111
rosa_laevigata	RLG00000010588
rosa_roxburghii	Rroxscaffold_7G00159640
rosa_rugosa	Rorug06G0369800
rosa_samantha	Rh6AG482600 Rh6BG491600 Rh6BG491700 Rh6CG496400 Rh6DG483300
rosa_wichuraiana	Rw6G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	146, 252
AcuI	CTGAAG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	80, 133
ApoI	RAATTY	2 cut(s)	146, 252
AspLEI	GCGC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	67, 145
BccI	CCATC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	81, 134
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	82, 135
Bpu1102I	GCTNAGC	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	155, 171
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	67, 145
BsiSI	CCGG	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	154, 172
BspPI	GGATC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	212
BssMI	GATC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	141, 180
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 86, 209
BstV1I	GCAGC	2 cut(s)	67, 145
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	212
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	136, 179, 184, 212
CviKI_1	RGCY	4 cut(s)	136, 179, 184, 212
DdeI	CTNAG	2 cut(s)	141, 180
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	192
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	15, 17, 98, 104, 129, 131, 201
FatI	CATG	1 cut(s)	102
FauNDI	CATATG	2 cut(s)	15, 129
Fnu4HI	GCNGC	2 cut(s)	81, 134
Fsp4HI	GCNGC	2 cut(s)	81, 134
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	81, 134
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	65, 133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 86, 209
HpyF3I	CTNAG	2 cut(s)	141, 180
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	66, 75, 213, 226, 227
Lsp1109I	GCAGC	2 cut(s)	67, 145
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	2 cut(s)	146, 252
MnlI	CCTC	2 cut(s)	150, 195
MroNI	GCCGGC	1 cut(s)	212
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	14, 230
MspI	CCGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	62, 86, 209
NaeI	GCCGGC	1 cut(s)	214
NdeI	CATATG	2 cut(s)	15, 129
NdeII	GATC	1 cut(s)	58
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	106
PctI	GAATGC	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	82, 135
RseI	CAYNNNNRTG	2 cut(s)	14, 230
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	81, 134
Sau3AI	GATC	1 cut(s)	58
SetI	ASST	1 cut(s)	138
SgeI	CNNG	8 cut(s)	65, 74, 81, 115, 198, 225, 240, 254
SmiMI	CAYNNNNRTG	2 cut(s)	14, 230
Sse9I	AATT	2 cut(s)	146, 252
SsiI	CCGC	1 cut(s)	196
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	146, 252
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	2 cut(s)	80, 133
TspDTI	ATGAA	2 cut(s)	17, 248
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	146, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.