Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008275

Physical Location & Seq

Genomic Coordinates Forward (+)

69484902 .. 69486143

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG491700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATGCTCAACATCAGCAACTCTATGAAACCCAACTTCACAGAACTCGCAGAGTCTATTGCCCATGAGCTGGAAGTCGATATTTCTCAGGTTCACTTGAGGAACTACACTATTTCAGGAAATGATTTACTCATTAAGTGGACTATCGTACCTGATGAATCTGCCAATAGCTTTACTACTACCAAAGCAATGAACATAATTCGGCGCTTAAGGGAACATCAGATGCAGCTTCCCCATAAATTTGGGAGTTATCAGCTGGTCAAATTGAAAGTTGAACCTCAAATAAAGCGGTCATGGTGGGAGCAACATTCTTGGATGGTGGCAGTTGGAGTTTCAGTTGCCTCGGTTCTTGGACTATTAGCATTAGGGACATGGTTGGTTTGGAGATACAGATCGCGACAGGGCATGACTTATGAGCCTGTTGATGGCGTTGTTGGTGCGGTTGTTGCAGAGCAAGAACTTCAGCCCCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

158

Amino Acids

18.09

Weight (kDa)

8.04

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43100 AT5G43100
fragaria_vesca	FvH4_2g33420
malus_domestica	MD08G1089200.v1.1 MD08G1089400.v1.1 MD15G1074000.v1.1
prunus_persica	Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1 Prupe.1G426800_v2.0.a1
pyrus_communis	pycom08g07250 pycom08g07270 pycom15g06910
rosa_chinensis	RchiOBHm_Chr6g0309111
rosa_laevigata	RLG00000010588
rosa_roxburghii	Rroxscaffold_7G00159640
rosa_rugosa	Rorug06G0369800
rosa_samantha	Rh6AG482600 Rh6BG491600 Rh6BG491700 Rh6CG496400 Rh6DG483300
rosa_wichuraiana	Rw6G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccII	CGCG	1 cut(s)	397
AciI	CCGC	2 cut(s)	289, 440
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	70, 425
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	268, 275
AluBI	AGCT	4 cut(s)	70, 171, 229, 256
AluI	AGCT	4 cut(s)	70, 171, 229, 256
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	207
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	310, 419
BfoI	RGCGCY	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 425
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	70, 425
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	70, 425
BsmFI	GGGAC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	397
BspACI	CCGC	2 cut(s)	289, 440
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	392
BstAFI	CTTAAG	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	321
BtuMI	TCGCGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	4 cut(s)	65, 294, 372, 406
CviJI	RGCY	6 cut(s)	70, 171, 229, 256, 418, 466
CviKI_1	RGCY	6 cut(s)	70, 171, 229, 256, 418, 466
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	446
FaeI	CATG	4 cut(s)	68, 297, 375, 409
FaiI	YATR	8 cut(s)	26, 66, 197, 237, 295, 373, 407, 414
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	4 cut(s)	64, 293, 371, 405
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	208
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	68, 297, 375, 409
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	53, 158
Hpy166II	GTNNAC	2 cut(s)	94, 141
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	117, 396
Hpy8I	GTNNAC	2 cut(s)	94, 141
HpyCH4V	TGCA	2 cut(s)	226, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	68, 297, 375, 409
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	56, 74, 102, 165, 242, 386, 432
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	213
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MluCI	AATT	3 cut(s)	198, 239, 263
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	93, 288, 352
MseI	TTAA	3 cut(s)	135, 209, 471
MspA1I	CMGCKG	1 cut(s)	256
MspCI	CTTAAG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	4 cut(s)	68, 297, 375, 409
NruI	TCGCGA	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	256
RruI	TCGCGA	1 cut(s)	397
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	135, 209, 471
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	62
SetI	ASST	7 cut(s)	72, 93, 154, 173, 231, 258, 280
SfaNI	GCATC	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	97, 208
SmoI	CTYRAG	2 cut(s)	97, 208
Sse9I	AATT	3 cut(s)	198, 239, 263
SsiI	CCGC	2 cut(s)	289, 440
TaqI	TCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	198, 239, 263
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	135, 209, 471
Tru9I	TTAA	3 cut(s)	135, 209, 471
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	41, 171, 206
Van91I	CCANNNNNTGG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.