Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013806

Physical Location & Seq

Genomic Coordinates Reverse (-)

17419790 .. 17421982

Gene Structure 2193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGATCCTGGTACTTTAAACTCGGTGATCAATAGGTTGCTTGAAGCTAGAGAAAAACCAGGAAAGATTGTTCAGTTGTCTGAAACAGAGATCAAACAGCTCTGTTTCGTCTCTAGAGATATCTTCTTGAGACAACCAAATCTCTTGGAACTTGAAGCTCCTGTTAAAATATGTGGGGACATTCATGGACAATATCCGGATCTCTTGAGACTATTCGAACATGGCGGATACCCTCCTAATTCAAACTACTTGTTTCTTGGAGATTATGTCGATCGCGGCAAGCAAAGCCTCGAAACGATTTGTCTTTTACTTGCTTACAAGATTAAGTTCCCTGAAAACTTCTTCCTTCTCAGAGGAAACCATGAAAGTGCATCAATCAATCGTATTTACGGCTTCTATGACGAGTGTAAACGTAGATTCAGTGTCAAGATTTGGCGAATCTTCACTGATTGCTTCAACTGTCTCCCCGTCGCTGCACTCATCGATGAGCGGATTTTTTGTATGCATGGTGGGCTCTCCCCGGAGCTGCTAAGCTTGAGGCAGATTAGGGATATTCGTCGTCCAACGGATATTCCTGATCGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCTGATAAAGATGTTAGAGGTTGGGGGCCTAACGATCGCGGAGTTTCTTACACTTTTGGATCAGATATAGTTTCTGGATTTCTTAAAAGACTCGATCTTGACCTCATTTGTAGGGCTCACCAGGTTGTTGAAGATGGATTCGAGTTCTTTGCGAATAAGCAGCTCGTAACGATATTCTCTGCGCCGAATTACTGTGGGGAATTTGACAATGCAGGTGCGATGATGAGTGTGTCTGAGGATTTGACCTGCTCTTTTCAGATCTTAAAATCTAATGACAAGAAATCAAAGTTCAGTTTCGGAAGCAGAGGTGGTGCTAAAACTAGCTTCCCTTATCCTAAAGTGAAGTCGATTCTGAGTTCGCAAAATTCGAAAGAATACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

331

Amino Acids

37.7

Weight (kDa)

6.94

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 52	1.2e-18	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	54 - 247	2.9e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43380 AT5G43380 AT5G43380
fragaria_vesca	FvH4_6g09230
malus_domestica	MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica	Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis	pycom04g15910 pycom12g18130
rosa_chinensis	RchiOBHm_Chr3g0459571
rosa_laevigata	RLG00000025079
rosa_multiflora	Rmu_sc0000240.1_g000007
rosa_roxburghii	Rroxscaffold_6G00420180
rosa_rugosa	Rorug03G0036400
rosa_samantha	Rh3DG099000
rosa_wichuraiana	Rw0G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	815
Acc36I	ACCTGC	2 cut(s)	815, 866
AccBSI	CCGCTC	1 cut(s)	490
AccII	CGCG	2 cut(s)	276, 651
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	4 cut(s)	225, 276, 490, 651
AclWI	GGATC	4 cut(s)	12, 207, 605, 679
AcsI	RAATTY	2 cut(s)	812, 976
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	44, 155, 243, 457, 743
AjnI	CCWGG	3 cut(s)	7, 58, 732
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	7 cut(s)	47, 100, 158, 526, 534, 775, 936
AluI	AGCT	7 cut(s)	47, 100, 158, 526, 534, 775, 936
Alw26I	GTCTC	4 cut(s)	115, 124, 202, 467
AlwI	GGATC	4 cut(s)	12, 207, 605, 679
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	638
ApeKI	GCWGC	3 cut(s)	473, 526, 772
ApoI	RAATTY	2 cut(s)	812, 976
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	37, 722
AsuII	TTCGAA	2 cut(s)	216, 980
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	516, 730
BbvI	GCAGC	3 cut(s)	460, 513, 784
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	3 cut(s)	9, 60, 734
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	4 cut(s)	115, 124, 202, 467
BfaI	CTAG	3 cut(s)	48, 114, 933
BfuAI	ACCTGC	2 cut(s)	815, 866
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	4 cut(s)	277, 474, 527, 773
BlpI	GCTNAGC	1 cut(s)	530
BlsI	GCNGC	4 cut(s)	278, 475, 528, 774
Bme1390I	CCNGG	4 cut(s)	9, 60, 521, 734
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	2 cut(s)	6, 639
BmrFI	CCNGG	4 cut(s)	9, 60, 521, 734
BmsI	GCATC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	530
Bpu14I	TTCGAA	2 cut(s)	216, 980
BpuEI	CTTGAG	3 cut(s)	148, 226, 556
BpuMI	CCSGG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	9, 60, 734
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMII	CTCAG	3 cut(s)	364, 837, 956
BseXI	GCAGC	3 cut(s)	460, 513, 784
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	2 cut(s)	276, 651
Bsh1285I	CGRYCG	2 cut(s)	274, 649
BshFI	GGCC	1 cut(s)	640
BshVI	ATCGAT	1 cut(s)	483
BsiEI	CGRYCG	2 cut(s)	274, 649
BsiSI	CCGG	2 cut(s)	197, 521
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	4 cut(s)	115, 124, 202, 467
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	640
Bsp119I	TTCGAA	2 cut(s)	216, 980
Bsp1286I	GDGCHC	2 cut(s)	516, 730
Bsp13I	TCCGGA	1 cut(s)	196
Bsp1720I	GCTNAGC	1 cut(s)	530
BspACI	CCGC	4 cut(s)	225, 276, 490, 651
BspANI	GGCC	1 cut(s)	640
BspCNI	CTCAG	3 cut(s)	363, 838, 957
BspDI	ATCGAT	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	276, 651
BspLI	GGNNCC	2 cut(s)	6, 639
BspMI	ACCTGC	2 cut(s)	815, 866
BspPI	GGATC	4 cut(s)	12, 207, 605, 679
BspT104I	TTCGAA	2 cut(s)	216, 980
BsrBI	CCGCTC	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	519
Bst2UI	CCWGG	3 cut(s)	9, 60, 734
Bst4CI	ACNGT	2 cut(s)	461, 806
BstBI	TTCGAA	2 cut(s)	216, 980
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	4 cut(s)	350, 530, 846, 965
BstFNI	CGCG	2 cut(s)	276, 651
BstHHI	GCGC	1 cut(s)	796
BstMAI	GTCTC	4 cut(s)	115, 124, 202, 467
BstMCI	CGRYCG	2 cut(s)	274, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 511
BstNI	CCWGG	3 cut(s)	9, 60, 734
BstSCI	CCNGG	4 cut(s)	7, 58, 519, 732
BstUI	CGCG	2 cut(s)	276, 651
BstV1I	GCAGC	3 cut(s)	460, 513, 784
BstX2I	RGATCY	3 cut(s)	4, 199, 870
BstYI	RGATCY	3 cut(s)	4, 199, 870
Bsu15I	ATCGAT	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	640
BsuTUI	ATCGAT	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	845
BtsIMutI	CAGTG	2 cut(s)	427, 444
BveI	ACCTGC	2 cut(s)	815, 866
Cac8I	GCNNGC	1 cut(s)	281
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	1 cut(s)	638
ClaI	ATCGAT	1 cut(s)	483
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	4 cut(s)	185, 221, 362, 506
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	4 cut(s)	350, 530, 846, 965
DraI	TTTAAA	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	516, 730
Eco32I	GATATC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	3 cut(s)	7, 58, 732
EcoRV	GATATC	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	516, 730
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	4 cut(s)	188, 224, 365, 509
FaiI	YATR	9 cut(s)	172, 186, 222, 267, 363, 399, 503, 507, 680
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	4 cut(s)	184, 220, 361, 505
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	277, 474, 527, 773
FriOI	GRGCYC	2 cut(s)	516, 730
Fsp4HI	GCNGC	4 cut(s)	277, 474, 527, 773
FspBI	CTAG	3 cut(s)	48, 114, 933
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	4 cut(s)	277, 474, 527, 773
HaeIII	GGCC	1 cut(s)	640
HapII	CCGG	2 cut(s)	197, 521
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	4 cut(s)	188, 224, 365, 509
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	5 cut(s)	417, 438, 702, 750, 961
HpaII	CCGG	2 cut(s)	197, 521
HphI	GGTGA	2 cut(s)	37, 722
Hpy166II	GTNNAC	2 cut(s)	410, 587
Hpy188I	TCNGA	8 cut(s)	82, 353, 610, 676, 847, 870, 911, 966
Hpy188III	TCNNGA	9 cut(s)	114, 127, 197, 205, 427, 575, 614, 687, 710
Hpy8I	GTNNAC	2 cut(s)	410, 587
Hpy99I	CGWCG	2 cut(s)	473, 561
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	461, 806
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	4 cut(s)	371, 476, 505, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 511
HpyF3I	CTNAG	4 cut(s)	350, 530, 846, 965
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	4 cut(s)	188, 224, 365, 509
HspAI	GCGC	1 cut(s)	794
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	163, 523
Lsp1109I	GCAGC	3 cut(s)	460, 513, 784
LweI	GCATC	1 cut(s)	380
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	3 cut(s)	48, 114, 933
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	778
MbiI	CCGCTC	1 cut(s)	490
MboII	GAAGA	4 cut(s)	115, 334, 433, 755
MflI	RGATCY	3 cut(s)	4, 199, 870
MhlI	GDGCHC	2 cut(s)	516, 730
MluCI	AATT	4 cut(s)	238, 799, 812, 976
MlyI	GAGTC	1 cut(s)	696
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	8 cut(s)	243, 299, 347, 531, 623, 725, 841, 911
Mph1103I	ATGCAT	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	5 cut(s)	17, 165, 324, 696, 875
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	197, 521
MspR9I	CCNGG	4 cut(s)	9, 60, 521, 734
MvaI	CCWGG	3 cut(s)	9, 60, 734
MvnI	CGCG	2 cut(s)	276, 651
MwoI	GCNNNNNNNGC	2 cut(s)	285, 511
NciI	CCSGG	1 cut(s)	521
NlaIII	CATG	4 cut(s)	188, 224, 365, 509
NlaIV	GGNNCC	2 cut(s)	6, 639
NsiI	ATGCAT	1 cut(s)	507
NspV	TTCGAA	2 cut(s)	216, 980
PaqCI	CACCTGC	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	977
PfeI	GAWTC	4 cut(s)	417, 438, 750, 961
PkrI	GCNGC	4 cut(s)	278, 475, 528, 774
Ple19I	CGATCG	2 cut(s)	274, 649
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	7, 58, 732
PspGI	CCWGG	3 cut(s)	7, 58, 732
PspN4I	GGNNCC	2 cut(s)	6, 639
PspPI	GGNCC	1 cut(s)	638
PsuI	RGATCY	3 cut(s)	4, 199, 870
PvuI	CGATCG	2 cut(s)	274, 649
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	5 cut(s)	17, 165, 324, 696, 875
SatI	GCNGC	4 cut(s)	277, 474, 527, 773
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	1 cut(s)	696
ScrFI	CCNGG	4 cut(s)	9, 60, 521, 734
SduI	GDGCHC	2 cut(s)	516, 730
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	380
SfuI	TTCGAA	2 cut(s)	216, 980
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	127, 205, 535
SmoI	CTYRAG	3 cut(s)	127, 205, 535
Sse9I	AATT	4 cut(s)	238, 799, 812, 976
SsiI	CCGC	4 cut(s)	225, 276, 490, 651
SspMI	CTAG	3 cut(s)	48, 114, 933
StyD4I	CCNGG	4 cut(s)	7, 58, 519, 732
TaaI	ACNGT	2 cut(s)	461, 806
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	8 cut(s)	216, 270, 291, 483, 705, 753, 959, 980
TasI	AATT	4 cut(s)	238, 799, 812, 976
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	417, 438, 750, 961
Tru1I	TTAA	5 cut(s)	17, 165, 324, 696, 875
Tru9I	TTAA	5 cut(s)	17, 165, 324, 696, 875
TscAI	CASTG	2 cut(s)	427, 451
TseI	GCWGC	3 cut(s)	473, 526, 772
TspDTI	ATGAA	2 cut(s)	173, 378
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	2 cut(s)	427, 451
XapI	RAATTY	2 cut(s)	812, 976
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	3 cut(s)	48, 114, 933
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.