Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013806

Physical Location & Seq

Genomic Coordinates Reverse (-)

27647081 .. 27649008

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1195100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGGATTGGATGCGCTGATACAGAGACTGTTGGAAGGCAGGGTTCACAGAGGTAAGAGGATTCAGCTAACCGAAGCCGAAATCCGGCAACTTTGCATCACTGCCAAACAAGTCTTCCTCAGGCAGCCTAATCTTCTCGAATTGGAAGCCCCCATCAACGTTTGCGGTGATATACACGGGCAATATCCTGACCTCTTGCGATTATTTGAGTACGGAGGCTTCCCACCGGAAGCCAACTATGTATTCCTTGGAGACTACGTCGACAGAGGAAAACAAAGCACAGAGACAATATGCCTTCTCCTTGCATATAAAGTCAAATTTCCGGACAATTTTTTCCTCCTCCGAGGGAACCACGAATGCGCTTCCATCAATCGAATCTATGGATTTTACGATGAGTGTAAACGCCGCTTCAGCGTCCGGCTATGGAAGATCTTCACAGACTGCTTTAACTGTTTACCTGTGGCTGCAGTCATAGATGACAAGATCTTCTGCATGCATGGTGGCCTGTCTCCTGAATTGAACAGCTTGGAACAGCTCAGAGCGATTGAAAGGCCGGTTGACGTGCCAGATCAAGGGCTTTTGTGTGACCTACTTTGGTCGGATCCGGACAGGGACATTAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCTTTTACCTTTGGGGCAGATAGGGTTGCAGAGTTCTTGCTGAAACATGATATGGATCTCATATGCCGGGCTCACCAGGTCGTAGAAGACGGATATGAGTTCTTTGCAGACCGGCAGTTGGTGACCATATTCTCAGCACCGAACTATTGTGGAGAGTTCAACAATGCAGGTGCATTGATGAGTGTCGATGCCAGTTTGCTTTGCTCATTTCAAATAGTGAAACCTTGGAGAGGGAAAGCTTTTCAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

302

Amino Acids

34.4

Weight (kDa)

5.19

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	4 - 50	3.4e-17	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	52 - 245	1.8e-49	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43380 AT5G43380 AT5G43380
fragaria_vesca	FvH4_6g09230
malus_domestica	MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica	Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis	pycom04g15910 pycom12g18130
rosa_chinensis	RchiOBHm_Chr3g0459571
rosa_laevigata	RLG00000025079
rosa_multiflora	Rmu_sc0000240.1_g000007
rosa_roxburghii	Rroxscaffold_6G00420180
rosa_rugosa	Rorug03G0036400
rosa_samantha	Rh3DG099000
rosa_wichuraiana	Rw0G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	809
AccI	GTMKAC	1 cut(s)	264
AccIII	TCCGGA	2 cut(s)	325, 607
AciI	CCGC	2 cut(s)	168, 409
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	3 cut(s)	599, 612, 714
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	87, 575, 769, 881
AgsI	TTSAA	4 cut(s)	523, 551, 811, 863
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 230, 262
AluBI	AGCT	4 cut(s)	70, 528, 538, 890
AluI	AGCT	4 cut(s)	70, 528, 538, 890
Alw26I	GTCTC	4 cut(s)	22, 249, 281, 516
AlwI	GGATC	3 cut(s)	599, 612, 714
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor13HI	TCCGGA	2 cut(s)	325, 607
AoxI	GGCC	2 cut(s)	505, 554
ApeKI	GCWGC	2 cut(s)	127, 467
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	19, 365
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	4 cut(s)	182, 644, 716, 784
AxyI	CCTNAGG	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	724
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	2 cut(s)	109, 744
BbvI	GCAGC	2 cut(s)	139, 454
BccI	CCATC	2 cut(s)	164, 377
BciT130I	CCWGG	1 cut(s)	728
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	4 cut(s)	22, 249, 281, 516
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	809
BglII	AGATCT	2 cut(s)	432, 486
BisI	GCNGC	3 cut(s)	128, 409, 468
BlsI	GCNGC	3 cut(s)	129, 410, 469
Bme1390I	CCNGG	2 cut(s)	719, 728
BmgBI	CACGTC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	353, 606
BmrFI	CCNGG	2 cut(s)	719, 728
BmsI	GCATC	3 cut(s)	4, 108, 829
BpiI	GAAGAC	2 cut(s)	109, 744
BpuMI	CCSGG	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	705
BsaJI	CCNNGG	3 cut(s)	250, 346, 875
BsaWI	WCCGGW	3 cut(s)	229, 325, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 575, 769, 881
Bse118I	RCCGGY	2 cut(s)	556, 762
Bse1I	ACTGG	1 cut(s)	843
Bse21I	CCTNAGG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	2 cut(s)	325, 607
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	3 cut(s)	250, 346, 875
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	87, 575, 769, 881
BseMII	CTCAG	3 cut(s)	136, 553, 798
BseNI	ACTGG	1 cut(s)	843
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	139, 454
BshFI	GGCC	2 cut(s)	507, 556
BsiSI	CCGG	8 cut(s)	88, 230, 326, 421, 557, 608, 718, 763
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	4 cut(s)	87, 575, 769, 881
BsmAI	GTCTC	4 cut(s)	22, 249, 281, 516
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	507, 556
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp13I	TCCGGA	2 cut(s)	325, 607
Bsp143I	GATC	5 cut(s)	432, 486, 571, 604, 706
BspACI	CCGC	2 cut(s)	168, 409
BspANI	GGCC	2 cut(s)	507, 556
BspCNI	CTCAG	3 cut(s)	135, 552, 797
BspEI	TCCGGA	2 cut(s)	325, 607
BspLI	GGNNCC	2 cut(s)	353, 606
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	809
BspPI	GGATC	3 cut(s)	599, 612, 714
BsrFI	RCCGGY	2 cut(s)	556, 762
BsrI	ACTGG	1 cut(s)	843
BssAI	RCCGGY	2 cut(s)	556, 762
BssECI	CCNNGG	3 cut(s)	250, 346, 875
BssMI	GATC	5 cut(s)	432, 486, 571, 604, 706
BssT1I	CCWWGG	2 cut(s)	250, 875
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	2 cut(s)	33, 455
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	122, 539, 784
BstEII	GGTNACC	1 cut(s)	772
BstENI	CCTNNNNNAGG	1 cut(s)	879
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	19, 365
BstKTI	GATC	5 cut(s)	435, 489, 574, 607, 709
BstMAI	GTCTC	4 cut(s)	22, 249, 281, 516
BstMBI	GATC	5 cut(s)	432, 486, 571, 604, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	499
BstPI	GGTNACC	1 cut(s)	772
BstSCI	CCNGG	2 cut(s)	717, 726
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	139, 454
BstV2I	GAAGAC	2 cut(s)	109, 744
BstX2I	RGATCY	4 cut(s)	432, 486, 604, 706
BstYI	RGATCY	4 cut(s)	432, 486, 604, 706
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	507, 556
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	1 cut(s)	497
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	2 cut(s)	19, 365
Cfr10I	RCCGGY	2 cut(s)	556, 762
CseI	GACGC	1 cut(s)	406
CsiI	ACCWGGT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	496, 500, 698
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	122, 539, 784
DpnI	GATC	5 cut(s)	434, 488, 573, 606, 708
DpnII	GATC	5 cut(s)	432, 486, 571, 604, 706
Eco130I	CCWWGG	2 cut(s)	250, 875
Eco24I	GRGCYC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	397
Eco81I	CCTNAGG	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	879
EcoO65I	GGTNACC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	2 cut(s)	250, 875
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	724
ErhI	CCWWGG	2 cut(s)	250, 875
FaeI	CATG	3 cut(s)	499, 503, 701
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	3 cut(s)	495, 499, 697
FauNDI	CATATG	1 cut(s)	713
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	128, 409, 468
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	3 cut(s)	128, 409, 468
GlaI	GCGC	2 cut(s)	18, 364
GluI	GCNGC	3 cut(s)	128, 409, 468
HaeIII	GGCC	2 cut(s)	507, 556
HapII	CCGG	8 cut(s)	88, 230, 326, 421, 557, 608, 718, 763
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	2 cut(s)	19, 365
Hin1II	CATG	3 cut(s)	499, 503, 701
Hin6I	GCGC	2 cut(s)	17, 363
HinP1I	GCGC	2 cut(s)	17, 363
HincII	GTYRAC	2 cut(s)	265, 562
HindII	GTYRAC	2 cut(s)	265, 562
HindIII	AAGCTT	1 cut(s)	888
HinfI	GANTC	2 cut(s)	64, 378
HpaII	CCGG	8 cut(s)	88, 230, 326, 421, 557, 608, 718, 763
HphI	GGTGA	4 cut(s)	182, 644, 716, 784
Hpy166II	GTNNAC	5 cut(s)	49, 265, 404, 458, 562
Hpy188I	TCNGA	3 cut(s)	347, 542, 604
Hpy188III	TCNNGA	5 cut(s)	140, 191, 326, 515, 608
Hpy8I	GTNNAC	5 cut(s)	49, 265, 404, 458, 562
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	32, 308
HpyCH4III	ACNGT	2 cut(s)	33, 455
HpyCH4IV	ACGT	3 cut(s)	162, 261, 564
HpyCH4V	TGCA	9 cut(s)	99, 308, 470, 495, 499, 680, 758, 818, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	3 cut(s)	122, 539, 784
HpySE526I	ACGT	3 cut(s)	162, 261, 564
Hsp92II	CATG	3 cut(s)	499, 503, 701
HspAI	GCGC	2 cut(s)	17, 363
Kpn2I	TCCGGA	2 cut(s)	325, 607
Kzo9I	GATC	5 cut(s)	432, 486, 571, 604, 706
Lsp1109I	GCAGC	2 cut(s)	139, 454
LweI	GCATC	3 cut(s)	4, 108, 829
MabI	ACCWGGT	1 cut(s)	726
MaeII	ACGT	3 cut(s)	162, 261, 564
MaeIII	GTNAC	2 cut(s)	587, 772
MalI	GATC	5 cut(s)	434, 488, 573, 606, 708
MboI	GATC	5 cut(s)	432, 486, 571, 604, 706
MboII	GAAGA	6 cut(s)	109, 128, 427, 442, 481, 749
MflI	RGATCY	4 cut(s)	432, 486, 604, 706
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	4 cut(s)	143, 320, 331, 518
MmeI	TCCRAC	2 cut(s)	15, 582
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	2 cut(s)	325, 607
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	2 cut(s)	450, 621
MspI	CCGG	8 cut(s)	88, 230, 326, 421, 557, 608, 718, 763
MspR9I	CCNGG	2 cut(s)	719, 728
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	1 cut(s)	414
NciI	CCSGG	1 cut(s)	719
NdeI	CATATG	1 cut(s)	713
NdeII	GATC	5 cut(s)	432, 486, 571, 604, 706
NlaIII	CATG	3 cut(s)	499, 503, 701
NlaIV	GGNNCC	2 cut(s)	353, 606
NmuCI	GTSAC	2 cut(s)	587, 772
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	809
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	64, 378
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	129, 410, 469
Psp1406I	AACGTT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	726
PspEI	GGTNACC	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	353, 606
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	4 cut(s)	432, 486, 604, 706
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	450, 621
SatI	GCNGC	3 cut(s)	128, 409, 468
Sau3AI	GATC	5 cut(s)	432, 486, 571, 604, 706
ScrFI	CCNGG	2 cut(s)	719, 728
SduI	GDGCHC	1 cut(s)	724
SexAI	ACCWGGT	1 cut(s)	726
SfaNI	GCATC	3 cut(s)	4, 108, 829
SfcI	CTRYAG	1 cut(s)	468
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	4 cut(s)	143, 320, 331, 518
SsiI	CCGC	2 cut(s)	168, 409
StyD4I	CCNGG	2 cut(s)	717, 726
StyI	CCWWGG	2 cut(s)	250, 875
TaaI	ACNGT	2 cut(s)	33, 455
TaiI	ACGT	3 cut(s)	165, 264, 567
TaqI	TCGA	4 cut(s)	141, 264, 376, 837
TasI	AATT	4 cut(s)	143, 320, 331, 518
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	64, 378
Tru1I	TTAA	2 cut(s)	450, 621
Tru9I	TTAA	2 cut(s)	450, 621
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	587, 772
TseI	GCWGC	2 cut(s)	127, 467
Tsp45I	GTSAC	2 cut(s)	587, 772
TspGWI	ACGGA	2 cut(s)	231, 756
TspRI	CASTG	1 cut(s)	109
Tth111I	GACNNNGTC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	879
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.