MD04G1179900.v1.1

Serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013806
Physical Location & Seq
Reverse (-)
27091697 .. 27093197
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1179900.v1.1.491

Sequence Viewer

Length: 906 bp
ATGGAAGGATTGGATGCGCTGATACAGAGACTGTTGGAAGGCAGGGTTAACAGAGGTAAAAAGATTCAGCTAACCGAATCCGAAATCCGACAACTTTGCATCACTGCCAAAGAAGTCTTCCTCCGGCAGCCTAATCTTCTCGAATTGGAAGCCCCCATCAACGTTTGCGGTGATATACACGGGCAATATCCGGACCTCTTGCGCTTATTCGAGTATGGAGGCTTCCCACCTGACGCCAACTATGTGTTCCTTGGAGACTATGTAGACAGAGGAAAACAAAGCATAGAGACAATATGCCTTCTCCTTGCGTACAAAGTCAAATTCCCGGACAACTTTTTCCTCCTCCGAGGGAACCACGAATGTGCTTCCATCAACCGAATCTATGGATTCTACGATGAGTGTAAACGCCGCTTCAGCGTCCGGCTATGGAAGCTCTTCACAGACTGCTTTAATTGTTTACCTGTGGCTGCAGTCATAGATGACAAGATCTTCTGCATGCATGGTGGCCTGTCTCCTGAATTGAACAGCTTGGAACAACTCAGAGCCATCGAAAGGCCGGTTGACGTGCCGGATCAAGGGCTTTTGTGTGACCTACTTTGGTCGGATCCGGACAGGGACATTAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCTTATACCTTTGGGGCAGATAAGGTTGCAGAGTTCTTGATGAAACATGATATGGATCTCATATGCCGGGCTCACCAGGTTGTCGAAGATGGATATGAGTTCTTTGCAGAACGGCAGTTGGTGACCATATTCTCGGCGCCAAACTATTGCGGAGAGTTCAACAATGCAGGTGCATTGATGAGTGTGGATGCAAGTTTGCTTTGCTCATTTCAAATAGTGAAACCCTGGAGAGGGAAAGCTCCTCAGGTAGAATGA

Protein Analysis

302

Amino Acids

34.34

Weight (kDa)

5.06

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STPPase_N PF16891 4 - 50 3.9e-18 Serine-threonine protein phosphatase N-terminal domain
Metallophos PF00149 52 - 245 5.4e-49 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013806)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43380 AT5G43380 AT5G43380
fragaria_vesca FvH4_6g09230
malus_domestica MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis pycom04g15910 pycom12g18130
rosa_chinensis RchiOBHm_Chr3g0459571
rosa_laevigata RLG00000025079
rosa_multiflora Rmu_sc0000240.1_g000007
rosa_roxburghii Rroxscaffold_6G00420180
rosa_rugosa Rorug03G0036400
rosa_samantha Rh3DG099000
rosa_wichuraiana Rw0G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 787
AccI GTMKAC 1 cut(s) 264
AccIII TCCGGA 2 cut(s) 190, 607
AciI CCGC 3 cut(s) 168, 409, 801
AclI AACGTT 1 cut(s) 162
AclWI GGATC 4 cut(s) 579, 599, 612, 714
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 397
AcyI GRCGYC 2 cut(s) 234, 788
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 552, 575, 881, 882
AgsI TTSAA 3 cut(s) 523, 811, 863
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 2 cut(s) 726, 875
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 230, 262
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 4 cut(s) 70, 433, 528, 890
AluI AGCT 4 cut(s) 70, 433, 528, 890
Alw26I GTCTC 4 cut(s) 22, 249, 281, 516
AlwI GGATC 4 cut(s) 579, 599, 612, 714
AlwNI CAGNNNCTG 1 cut(s) 31
Aor13HI TCCGGA 2 cut(s) 190, 607
AoxI GGCC 2 cut(s) 505, 554
ApeKI GCWGC 2 cut(s) 127, 467
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 3 cut(s) 19, 204, 790
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 326, 719
AsuHPI GGTGA 4 cut(s) 182, 644, 716, 784
AvaII GGWCC 1 cut(s) 193
AxyI CCTNAGG 1 cut(s) 894
BamHI GGATCC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 724
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 139, 454
BccI CCATC 4 cut(s) 164, 377, 554, 734
BceAI ACGGC 1 cut(s) 779
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 2 cut(s) 728, 877
BcnI CCSGG 2 cut(s) 326, 719
BcoDI GTCTC 4 cut(s) 22, 249, 281, 516
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 809
BglII AGATCT 1 cut(s) 486
BisI GCNGC 3 cut(s) 128, 409, 468
BlsI GCNGC 3 cut(s) 129, 410, 469
Bme1390I CCNGG 4 cut(s) 326, 719, 728, 877
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 3 cut(s) 353, 606, 789
BmrFI CCNGG 4 cut(s) 326, 719, 728, 877
BmsI GCATC 3 cut(s) 4, 108, 829
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 898
BpuMI CCSGG 2 cut(s) 326, 719
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 2 cut(s) 234, 788
BsaJI CCNNGG 3 cut(s) 250, 346, 875
BsaWI WCCGGW 2 cut(s) 190, 607
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 4 cut(s) 552, 575, 881, 882
Bse118I RCCGGY 1 cut(s) 556
Bse21I CCTNAGG 1 cut(s) 894
Bse8I GATNNNNATC 1 cut(s) 705
BseAI TCCGGA 2 cut(s) 190, 607
BseBI CCWGG 2 cut(s) 728, 877
BseDI CCNNGG 3 cut(s) 250, 346, 875
BseGI GGATG 2 cut(s) 19, 844
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 4 cut(s) 552, 575, 881, 882
BseMII CTCAG 1 cut(s) 553
BseRI GAGGAG 2 cut(s) 332, 882
BseXI GCAGC 2 cut(s) 139, 454
BshFI GGCC 2 cut(s) 507, 556
BshNI GGYRCC 1 cut(s) 787
BsiSI CCGG 8 cut(s) 124, 191, 326, 421, 557, 569, 608, 718
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 4 cut(s) 552, 575, 881, 882
BsmAI GTCTC 4 cut(s) 22, 249, 281, 516
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 2 cut(s) 507, 556
Bsp1286I GDGCHC 1 cut(s) 724
Bsp13I TCCGGA 2 cut(s) 190, 607
Bsp143I GATC 4 cut(s) 486, 571, 604, 706
BspACI CCGC 3 cut(s) 168, 409, 801
BspANI GGCC 2 cut(s) 507, 556
BspCNI CTCAG 1 cut(s) 552
BspEI TCCGGA 2 cut(s) 190, 607
BspLI GGNNCC 3 cut(s) 353, 606, 789
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 809
BspPI GGATC 4 cut(s) 579, 599, 612, 714
BspQI GCTCTTC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 3 cut(s) 250, 346, 875
BssMI GATC 4 cut(s) 486, 571, 604, 706
BssNI GRCGYC 2 cut(s) 234, 788
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 728, 877
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 2 cut(s) 234, 788
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 2 cut(s) 539, 894
BstEII GGTNACC 1 cut(s) 772
BstF5I GGATG 2 cut(s) 19, 844
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 3 cut(s) 19, 204, 790
BstKTI GATC 4 cut(s) 489, 574, 607, 709
BstMAI GTCTC 4 cut(s) 22, 249, 281, 516
BstMBI GATC 4 cut(s) 486, 571, 604, 706
BstMWI GCNNNNNNNGC 2 cut(s) 414, 430
BstNI CCWGG 2 cut(s) 728, 877
BstNSI RCATGY 1 cut(s) 499
BstPI GGTNACC 1 cut(s) 772
BstSCI CCNGG 4 cut(s) 324, 717, 726, 875
BstSFI CTRYAG 1 cut(s) 468
BstV1I GCAGC 2 cut(s) 139, 454
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 3 cut(s) 486, 604, 706
BstYI RGATCY 3 cut(s) 486, 604, 706
Bsu36I CCTNAGG 1 cut(s) 894
BsuRI GGCC 2 cut(s) 507, 556
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 2 cut(s) 19, 844
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 1 cut(s) 497
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 3 cut(s) 19, 204, 790
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 2 cut(s) 242, 406
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 496, 500, 698
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 539, 894
DinI GGCGCC 1 cut(s) 789
DpnI GATC 4 cut(s) 488, 573, 606, 708
DpnII GATC 4 cut(s) 486, 571, 604, 706
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 397
Eco81I CCTNAGG 1 cut(s) 894
Eco91I GGTNACC 1 cut(s) 772
EcoO65I GGTNACC 1 cut(s) 772
EcoRII CCWGG 2 cut(s) 726, 875
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 724
EgeI GGCGCC 1 cut(s) 789
EheI GGCGCC 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 499, 503, 701
FaqI GGGAC 1 cut(s) 629
FatI CATG 3 cut(s) 495, 499, 697
FauNDI CATATG 1 cut(s) 713
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 128, 409, 468
FokI GGATG 2 cut(s) 26, 851
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 3 cut(s) 128, 409, 468
GlaI GCGC 3 cut(s) 18, 203, 789
GluI GCNGC 3 cut(s) 128, 409, 468
GsuI CTGGAG 1 cut(s) 898
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 2 cut(s) 507, 556
HapII CCGG 8 cut(s) 124, 191, 326, 421, 557, 569, 608, 718
HgaI GACGC 2 cut(s) 242, 406
HhaI GCGC 3 cut(s) 19, 204, 790
Hin1I GRCGYC 2 cut(s) 234, 788
Hin1II CATG 3 cut(s) 499, 503, 701
Hin6I GCGC 3 cut(s) 17, 202, 788
HinP1I GCGC 3 cut(s) 17, 202, 788
HincII GTYRAC 2 cut(s) 49, 562
HindII GTYRAC 2 cut(s) 49, 562
HinfI GANTC 4 cut(s) 64, 77, 378, 387
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 8 cut(s) 124, 191, 326, 421, 557, 569, 608, 718
HphI GGTGA 4 cut(s) 182, 644, 716, 784
Hpy166II GTNNAC 5 cut(s) 49, 265, 404, 458, 562
Hpy188I TCNGA 5 cut(s) 82, 89, 347, 542, 604
Hpy188III TCNNGA 5 cut(s) 140, 191, 515, 608, 688
Hpy8I GTNNAC 5 cut(s) 49, 265, 404, 458, 562
HpyAV CCTTC 2 cut(s) 32, 308
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 2 cut(s) 162, 564
HpyCH4V TGCA 9 cut(s) 99, 470, 495, 499, 680, 758, 818, 824, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 430
HpyF3I CTNAG 2 cut(s) 539, 894
HpySE526I ACGT 2 cut(s) 162, 564
Hsp92I GRCGYC 2 cut(s) 234, 788
Hsp92II CATG 3 cut(s) 499, 503, 701
HspAI GCGC 3 cut(s) 17, 202, 788
KasI GGCGCC 1 cut(s) 787
Kpn2I TCCGGA 2 cut(s) 190, 607
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 4 cut(s) 486, 571, 604, 706
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 1 cut(s) 895
Lsp1109I GCAGC 2 cut(s) 139, 454
LweI GCATC 3 cut(s) 4, 108, 829
MabI ACCWGGT 1 cut(s) 726
MaeII ACGT 2 cut(s) 162, 564
MaeIII GTNAC 2 cut(s) 587, 772
MalI GATC 4 cut(s) 488, 573, 606, 708
MboI GATC 4 cut(s) 486, 571, 604, 706
MboII GAAGA 5 cut(s) 109, 128, 427, 481, 749
MflI RGATCY 3 cut(s) 486, 604, 706
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 4 cut(s) 143, 320, 451, 518
Mly113I GGCGCC 1 cut(s) 788
MmeI TCCRAC 3 cut(s) 15, 112, 582
Mph1103I ATGCAT 1 cut(s) 501
MroI TCCGGA 2 cut(s) 190, 607
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 3 cut(s) 48, 450, 621
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 8 cut(s) 124, 191, 326, 421, 557, 569, 608, 718
MspR9I CCNGG 4 cut(s) 326, 719, 728, 877
MvaI CCWGG 2 cut(s) 728, 877
MwoI GCNNNNNNNGC 2 cut(s) 414, 430
NarI GGCGCC 1 cut(s) 788
NciI CCSGG 2 cut(s) 326, 719
NdeI CATATG 1 cut(s) 713
NdeII GATC 4 cut(s) 486, 571, 604, 706
NlaIII CATG 3 cut(s) 499, 503, 701
NlaIV GGNNCC 3 cut(s) 353, 606, 789
NmeAIII GCCGAG 1 cut(s) 764
NmuCI GTSAC 2 cut(s) 587, 772
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 499
OliI CACNNNNGTG 1 cut(s) 360
PaeI GCATGC 1 cut(s) 499
PaqCI CACCTGC 1 cut(s) 809
PciSI GCTCTTC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 4 cut(s) 64, 77, 378, 387
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 3 cut(s) 129, 410, 469
PluTI GGCGCC 1 cut(s) 791
Psp1406I AACGTT 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 726, 875
PspEI GGTNACC 1 cut(s) 772
PspGI CCWGG 2 cut(s) 726, 875
PspN4I GGNNCC 3 cut(s) 353, 606, 789
PspPI GGNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 3 cut(s) 486, 604, 706
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 48, 450, 621
SatI GCNGC 3 cut(s) 128, 409, 468
Sau3AI GATC 4 cut(s) 486, 571, 604, 706
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 4 cut(s) 326, 719, 728, 877
SduI GDGCHC 1 cut(s) 724
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 3 cut(s) 4, 108, 829
SfcI CTRYAG 1 cut(s) 468
SfoI GGCGCC 1 cut(s) 789
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 360
SphI GCATGC 1 cut(s) 499
Sse9I AATT 4 cut(s) 143, 320, 451, 518
SsiI CCGC 3 cut(s) 168, 409, 801
SspDI GGCGCC 1 cut(s) 787
StyD4I CCNGG 4 cut(s) 324, 717, 726, 875
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 2 cut(s) 165, 567
TaqI TCGA 4 cut(s) 141, 210, 549, 735
TasI AATT 4 cut(s) 143, 320, 451, 518
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 4 cut(s) 64, 77, 378, 387
Tru1I TTAA 3 cut(s) 48, 450, 621
Tru9I TTAA 3 cut(s) 48, 450, 621
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 2 cut(s) 587, 772
TseI GCWGC 2 cut(s) 127, 467
Tsp45I GTSAC 2 cut(s) 587, 772
TspDTI ATGAA 1 cut(s) 707
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.