pycom04g15910

Serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013806
Physical Location & Seq
Reverse (-)
18646642 .. 18647931
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15910.1

Sequence Viewer

Length: 1011 bp
ATGGAAGGATTGGATGCGCTGATACAGAGACTGCTGGAAGGCAGGGTTAACAGAGGTAAAAAGATTCAGCTAACCGAATCCGAAATCCGGCAACTTTGCATCACTGCCAAAGAAGTCTTCCTCCGGCAGCCTAATCTTCTCGAATTGGAAGCCCCCATCAACGTTTGCGGTGATATACACGGGCAATATCCGGACCTCTTGCGATTATTCGAGTATGGAGGCTTCCCACCGGACGCCAACTATGTGTTCCTTGGAGACTACGTAGACAGAGGAAAACAAAGCATAGAGACAATATGCCTTCTCCTTGCATACAAAGTCAAATTCCCGGACAACTTTTTCCTCCTCCGAGGGAACCATGAATGTGCTTCCATCAACCGAATCTATGGATTCTACGATGAGTGTAAACGCCGCTTCAGCGTCCGGCTATGGAAGCTCTTCACAGACTGCTTTAATTGTTTACCTGTGGCTGCAGTCATAGATGACAAGATCTTCTGTATGCATGGTGGCCTGTCTCCTGAATTGAACAGCTTGGAACAACTCAGAGCCATCGAAAGGCCGGTTGATGTGCCGGATCAAGGGCTTTTGTGTGACCTACTTTGGTCGGATCCGGACAGGGACATTAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCTTATACCTTTGGGGCAGATAAGGTTGCAGAGTTCTTGATGAAACATGATATGGATCTCATATGCCGGGCTCACCAGGTCTCTGTTTTTCCCTTTTTTATATTTTATAAAGTTCACCGGTTGTATACAATTATGTCCCAACATGTTTTAGGTCACATAATGAGAGAGGTACGCCGCTTGATTGTTGTCGAAGATGGATATGAGTTCTTTGCAGAACGGCAGTTGGTGACCATATTCTCGGCGCCAAACTATTGCGGAGAGTTCAACAATGCAGGTGCATTGATGAGTGTGGATGCAAGTTTGCTTTGCTCATTTCAAATAGTGAAACCCTGGAGAGGGAAAGCTCCTCAGGTAGAATGA

Protein Analysis

337

Amino Acids

38.65

Weight (kDa)

5.7

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STPPase_N PF16891 4 - 50 4.6e-18 Serine-threonine protein phosphatase N-terminal domain
Metallophos PF00149 52 - 244 1.2e-48 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013806)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43380 AT5G43380 AT5G43380
fragaria_vesca FvH4_6g09230
malus_domestica MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis pycom04g15910 pycom12g18130
rosa_chinensis RchiOBHm_Chr3g0459571
rosa_laevigata RLG00000025079
rosa_multiflora Rmu_sc0000240.1_g000007
rosa_roxburghii Rroxscaffold_6G00420180
rosa_rugosa Rorug03G0036400
rosa_samantha Rh3DG099000
rosa_wichuraiana Rw0G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AarI CACCTGC 1 cut(s) 914
Acc36I ACCTGC 1 cut(s) 914
AccB1I GGYRCC 1 cut(s) 892
AccI GTMKAC 2 cut(s) 264, 776
AccIII TCCGGA 2 cut(s) 190, 607
AciI CCGC 4 cut(s) 168, 409, 826, 906
AclI AACGTT 1 cut(s) 162
AclWI GGATC 4 cut(s) 579, 599, 612, 714
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 397
AcyI GRCGYC 2 cut(s) 234, 893
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 5 cut(s) 87, 552, 575, 986, 987
AflIII ACRYGT 1 cut(s) 793
AgeI ACCGGT 1 cut(s) 768
AgsI TTSAA 3 cut(s) 523, 916, 968
AjnI CCWGG 2 cut(s) 726, 980
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 230, 262
AluBI AGCT 4 cut(s) 70, 433, 528, 995
AluI AGCT 4 cut(s) 70, 433, 528, 995
Alw26I GTCTC 5 cut(s) 22, 249, 281, 516, 736
AlwI GGATC 4 cut(s) 579, 599, 612, 714
AlwNI CAGNNNCTG 1 cut(s) 31
Aor13HI TCCGGA 2 cut(s) 190, 607
AoxI GGCC 2 cut(s) 505, 554
ApeKI GCWGC 2 cut(s) 127, 467
ApoI RAATTY 1 cut(s) 320
AsiGI ACCGGT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 2 cut(s) 19, 895
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 326, 719
AsuHPI GGTGA 5 cut(s) 182, 644, 716, 758, 889
AvaII GGWCC 1 cut(s) 193
AxyI CCTNAGG 1 cut(s) 999
BamHI GGATCC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 892
BanII GRGCYC 1 cut(s) 724
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 139, 454
BccI CCATC 4 cut(s) 164, 377, 554, 839
BceAI ACGGC 1 cut(s) 884
BciT130I CCWGG 2 cut(s) 728, 982
BcnI CCSGG 2 cut(s) 326, 719
BcoDI GTCTC 5 cut(s) 22, 249, 281, 516, 736
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 896
BfuAI ACCTGC 1 cut(s) 914
BglII AGATCT 1 cut(s) 486
BisI GCNGC 4 cut(s) 128, 409, 468, 826
BlsI GCNGC 4 cut(s) 129, 410, 469, 827
Bme1390I CCNGG 4 cut(s) 326, 719, 728, 982
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 3 cut(s) 353, 606, 894
BmrFI CCNGG 4 cut(s) 326, 719, 728, 982
BmsI GCATC 3 cut(s) 4, 108, 934
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 1003
BpuMI CCSGG 2 cut(s) 326, 719
BsaAI YACGTR 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 2 cut(s) 234, 893
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 3 cut(s) 250, 346, 980
BsaWI WCCGGW 4 cut(s) 190, 229, 607, 768
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 552, 575, 986, 987
Bse118I RCCGGY 2 cut(s) 556, 768
Bse21I CCTNAGG 1 cut(s) 999
Bse8I GATNNNNATC 1 cut(s) 705
BseAI TCCGGA 2 cut(s) 190, 607
BseBI CCWGG 2 cut(s) 728, 982
BseDI CCNNGG 3 cut(s) 250, 346, 980
BseGI GGATG 2 cut(s) 19, 949
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 5 cut(s) 87, 552, 575, 986, 987
BseMII CTCAG 1 cut(s) 553
BseRI GAGGAG 2 cut(s) 332, 987
BseXI GCAGC 2 cut(s) 139, 454
BshFI GGCC 2 cut(s) 507, 556
BshNI GGYRCC 1 cut(s) 892
BshTI ACCGGT 1 cut(s) 768
BslFI GGGAC 2 cut(s) 629, 772
BslI CCNNNNNNNGG 5 cut(s) 87, 552, 575, 986, 987
BsmAI GTCTC 5 cut(s) 22, 249, 281, 516, 736
BsmFI GGGAC 2 cut(s) 629, 772
BsnI GGCC 2 cut(s) 507, 556
Bso31I GGTCTC 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 724
Bsp13I TCCGGA 2 cut(s) 190, 607
Bsp143I GATC 4 cut(s) 486, 571, 604, 706
BspACI CCGC 4 cut(s) 168, 409, 826, 906
BspANI GGCC 2 cut(s) 507, 556
BspCNI CTCAG 1 cut(s) 552
BspEI TCCGGA 2 cut(s) 190, 607
BspLI GGNNCC 3 cut(s) 353, 606, 894
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 4 cut(s) 579, 599, 612, 714
BspQI GCTCTTC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 892
BspTNI GGTCTC 1 cut(s) 736
BsrFI RCCGGY 2 cut(s) 556, 768
BssAI RCCGGY 2 cut(s) 556, 768
BssECI CCNNGG 3 cut(s) 250, 346, 980
BssMI GATC 4 cut(s) 486, 571, 604, 706
BssNAI GTATAC 1 cut(s) 777
BssNI GRCGYC 2 cut(s) 234, 893
BssT1I CCWWGG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 728, 982
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 2 cut(s) 234, 893
BstBAI YACGTR 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 539, 999
BstEII GGTNACC 1 cut(s) 877
BstF5I GGATG 2 cut(s) 19, 949
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 2 cut(s) 19, 895
BstKTI GATC 4 cut(s) 489, 574, 607, 709
BstMAI GTCTC 5 cut(s) 22, 249, 281, 516, 736
BstMBI GATC 4 cut(s) 486, 571, 604, 706
BstMWI GCNNNNNNNGC 2 cut(s) 414, 430
BstNI CCWGG 2 cut(s) 728, 982
BstNSI RCATGY 1 cut(s) 797
BstPI GGTNACC 1 cut(s) 877
BstSCI CCNGG 4 cut(s) 324, 717, 726, 980
BstSFI CTRYAG 1 cut(s) 468
BstSNI TACGTA 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 139, 454
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 3 cut(s) 486, 604, 706
BstYI RGATCY 3 cut(s) 486, 604, 706
BstZ17I GTATAC 1 cut(s) 777
Bsu36I CCTNAGG 1 cut(s) 999
BsuRI GGCC 2 cut(s) 507, 556
BtsCI GGATG 2 cut(s) 19, 949
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 914
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 2 cut(s) 19, 895
Cfr10I RCCGGY 2 cut(s) 556, 768
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 2 cut(s) 242, 406
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 1 cut(s) 821
CspAI ACCGGT 1 cut(s) 768
CviAII CATG 4 cut(s) 356, 500, 698, 794
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 2 cut(s) 539, 999
DinI GGCGCC 1 cut(s) 894
DpnI GATC 4 cut(s) 488, 573, 606, 708
DpnII GATC 4 cut(s) 486, 571, 604, 706
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco105I TACGTA 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 724
Eco31I GGTCTC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 397
Eco81I CCTNAGG 1 cut(s) 999
Eco91I GGTNACC 1 cut(s) 877
EcoO65I GGTNACC 1 cut(s) 877
EcoRII CCWGG 2 cut(s) 726, 980
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 724
EgeI GGCGCC 1 cut(s) 894
EheI GGCGCC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 359, 503, 701, 797
FaqI GGGAC 2 cut(s) 629, 772
FatI CATG 4 cut(s) 355, 499, 697, 793
FauNDI CATATG 1 cut(s) 713
FblI GTMKAC 2 cut(s) 264, 776
Fnu4HI GCNGC 4 cut(s) 128, 409, 468, 826
FokI GGATG 2 cut(s) 26, 956
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 4 cut(s) 128, 409, 468, 826
GlaI GCGC 2 cut(s) 18, 894
GluI GCNGC 4 cut(s) 128, 409, 468, 826
GsuI CTGGAG 1 cut(s) 1003
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 2 cut(s) 507, 556
HgaI GACGC 2 cut(s) 242, 406
HhaI GCGC 2 cut(s) 19, 895
Hin1I GRCGYC 2 cut(s) 234, 893
Hin1II CATG 4 cut(s) 359, 503, 701, 797
Hin6I GCGC 2 cut(s) 17, 893
HinP1I GCGC 2 cut(s) 17, 893
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 4 cut(s) 64, 77, 378, 387
HpaI GTTAAC 1 cut(s) 49
HphI GGTGA 5 cut(s) 182, 644, 716, 758, 889
Hpy166II GTNNAC 6 cut(s) 49, 265, 404, 458, 766, 777
Hpy188I TCNGA 4 cut(s) 82, 347, 542, 604
Hpy188III TCNNGA 5 cut(s) 140, 191, 515, 608, 688
Hpy8I GTNNAC 6 cut(s) 49, 265, 404, 458, 766, 777
HpyAV CCTTC 2 cut(s) 32, 308
HpyCH4IV ACGT 2 cut(s) 162, 261
HpyCH4V TGCA 9 cut(s) 99, 308, 470, 499, 680, 863, 923, 929, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 430
HpyF3I CTNAG 2 cut(s) 539, 999
HpySE526I ACGT 2 cut(s) 162, 261
Hsp92I GRCGYC 2 cut(s) 234, 893
Hsp92II CATG 4 cut(s) 359, 503, 701, 797
HspAI GCGC 2 cut(s) 17, 893
KasI GGCGCC 1 cut(s) 892
Kpn2I TCCGGA 2 cut(s) 190, 607
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 4 cut(s) 486, 571, 604, 706
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 1 cut(s) 1000
Lsp1109I GCAGC 2 cut(s) 139, 454
LweI GCATC 3 cut(s) 4, 108, 934
MabI ACCWGGT 1 cut(s) 726
MaeII ACGT 2 cut(s) 162, 261
MaeIII GTNAC 3 cut(s) 587, 803, 877
MalI GATC 4 cut(s) 488, 573, 606, 708
MboI GATC 4 cut(s) 486, 571, 604, 706
MboII GAAGA 5 cut(s) 109, 128, 427, 481, 854
MflI RGATCY 3 cut(s) 486, 604, 706
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 5 cut(s) 143, 320, 451, 518, 780
Mly113I GGCGCC 1 cut(s) 893
MmeI TCCRAC 1 cut(s) 582
Mph1103I ATGCAT 1 cut(s) 501
MroI TCCGGA 2 cut(s) 190, 607
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 3 cut(s) 48, 450, 621
MslI CAYNNNNRTG 1 cut(s) 360
MspR9I CCNGG 4 cut(s) 326, 719, 728, 982
MvaI CCWGG 2 cut(s) 728, 982
MwoI GCNNNNNNNGC 2 cut(s) 414, 430
NarI GGCGCC 1 cut(s) 893
NciI CCSGG 2 cut(s) 326, 719
NdeI CATATG 1 cut(s) 713
NdeII GATC 4 cut(s) 486, 571, 604, 706
NlaIII CATG 4 cut(s) 359, 503, 701, 797
NlaIV GGNNCC 3 cut(s) 353, 606, 894
NmeAIII GCCGAG 1 cut(s) 869
NmuCI GTSAC 3 cut(s) 587, 803, 877
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 797
PaqCI CACCTGC 1 cut(s) 914
PciI ACATGT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 4 cut(s) 64, 77, 378, 387
PfoI TCCNGGA 1 cut(s) 324
PinAI ACCGGT 1 cut(s) 768
PkrI GCNGC 4 cut(s) 129, 410, 469, 827
PluTI GGCGCC 1 cut(s) 896
Ppu21I YACGTR 1 cut(s) 262
PscI ACATGT 1 cut(s) 793
PsiI TTATAA 1 cut(s) 759
Psp1406I AACGTT 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 726, 980
PspEI GGTNACC 1 cut(s) 877
PspGI CCWGG 2 cut(s) 726, 980
PspN4I GGNNCC 3 cut(s) 353, 606, 894
PspPI GGNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 3 cut(s) 486, 604, 706
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 48, 450, 621
SatI GCNGC 4 cut(s) 128, 409, 468, 826
Sau3AI GATC 4 cut(s) 486, 571, 604, 706
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 4 cut(s) 326, 719, 728, 982
SduI GDGCHC 1 cut(s) 724
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 3 cut(s) 4, 108, 934
SfcI CTRYAG 1 cut(s) 468
SfoI GGCGCC 1 cut(s) 894
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 360
SnaBI TACGTA 1 cut(s) 262
Sse9I AATT 5 cut(s) 143, 320, 451, 518, 780
SsiI CCGC 4 cut(s) 168, 409, 826, 906
SspDI GGCGCC 1 cut(s) 892
StyD4I CCNGG 4 cut(s) 324, 717, 726, 980
StyI CCWWGG 1 cut(s) 250
TaiI ACGT 2 cut(s) 165, 264
TaqI TCGA 4 cut(s) 141, 210, 549, 840
TasI AATT 5 cut(s) 143, 320, 451, 518, 780
TauI GCSGC 2 cut(s) 411, 828
TfiI GAWTC 4 cut(s) 64, 77, 378, 387
Tru1I TTAA 3 cut(s) 48, 450, 621
Tru9I TTAA 3 cut(s) 48, 450, 621
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 587, 803, 877
TseI GCWGC 2 cut(s) 127, 467
Tsp45I GTSAC 3 cut(s) 587, 803, 877
TspDTI ATGAA 2 cut(s) 372, 707
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 2 cut(s) 264, 776
XmnI GAANNNNTTC 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.