pycom12g18130

Serine threonine-protein phosphatase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
20373341 .. 20373573
233 bp
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UTR
Exon/CDS
Intron
pycom12g18130.2

Sequence Viewer

Length: 189 bp
ATGATCTTTGCCGTCGTAGAAGACGGATATGAGTTCTTTGCAGACCGGCAGTTGGTGACCATATTCTCGGCACCAAACTATTGTGGAGAGTTCAACAATGCAGGTGCATTGATGAGTGTCGATGCCAGTTTGCTTTGTTCATTTCAAATAGTGAAACCTTGGAGAGGGAAAGCTTTTCAGGTAGAATGA

Protein Analysis

63

Amino Acids

6.94

Weight (kDa)

4.57

Isoelectric Point (pI)

7.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013806)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43380 AT5G43380 AT5G43380
fragaria_vesca FvH4_6g09230
malus_domestica MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis pycom04g15910 pycom12g18130
rosa_chinensis RchiOBHm_Chr3g0459571
rosa_laevigata RLG00000025079
rosa_multiflora Rmu_sc0000240.1_g000007
rosa_roxburghii Rroxscaffold_6G00420180
rosa_rugosa Rorug03G0036400
rosa_samantha Rh3DG099000
rosa_wichuraiana Rw0G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 52, 164
AgsI TTSAA 2 cut(s) 94, 146
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 164
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 52, 164
BseNI ACTGG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 52, 164
Bsp143I GATC 1 cut(s) 3
BspLI GGNNCC 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 162
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstPI GGTNACC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 27
BveI ACCTGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 45
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaiI YATR 2 cut(s) 30, 62
HapII CCGG 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 171
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 41, 101, 107
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 59, 87, 139, 164
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 32
MnlI CCTC 1 cut(s) 158
MspI CCGG 1 cut(s) 46
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 3
SetI ASST 4 cut(s) 106, 160, 175, 183
SfaNI GCATC 1 cut(s) 112
SgeI CNNG 5 cut(s) 58, 79, 114, 138, 171
StyI CCWWGG 1 cut(s) 158
TaqI TCGA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.