Rw0G013870

Serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00621
OG0013806
Physical Location & Seq
Reverse (-)
92563 .. 94650
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013870.1

Sequence Viewer

Length: 906 bp
ATGGAAGGATTGGATGCCCTGATTCAGAGATTACTGGAGGGAAAGGTCAACAGAGGCAAAAGGATTCCTCTAGTAGAGACCGAAGTCCGCCAACTTTGCGTCACTGCTAAAGAAGTCTTTCTCAGGCAGCCTAATCTTCTTGAATTGGCAGCTCCCATTAATGTTTGTGGTGATATACATGGTCAATATCATGATCTCTTGCGACTTTTTGAGTTAGGTGGCTTTCCACCTGATGCGAATTACGTGTTTCTCGGAGACTATGTAGACAGAGGAAAACAGAGCGTAGAGACAATATGCCTTCTCCTTGCTTACAAAATAAAATATCCAGACAACTTTTTCCTCCTCCGAGGGAACCACGAATGCGCTTCCATCAACAGAATATATGGATTCTACGACGAGTGTAAGCGTCGGTTCAGCGTCCGGCTATGGAAGATCTTCACAGACTGCTTTAATTGTTTGCCTGTCGCCGCAATCATTGATGACAAGATCTTCTGCATGCATGGTGGCCTATCTCCTGAGTTGGAAACCTTGGATAAGCTCAGAGCTATACAGAGGCCGGTTGATGTACCGGACCAGGGACTATTATGTGACATTCTATGGTCAGATCCAGATAGAGACATTAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCGTATACTTTTGGACCTGATAGGGTGGCTGAATTCTTGATGAAACATGACATGGATCTCATATGCCGGGCACACCAGGTTGTTGAAGATGGTTACGAATTCTTTGCAGAAAGGCAGCTGGTCACCATATTCTCTGCACCAAACTATTGCGGAGAGTTCAACAATGCAGGTGCCTTAATGAGAGTGGATAAGAGTTTGCTTTGCTCATTTCAGCTAGTGAAACCTTGGAGAGGGAAAGGTACAGTAGATAATTGA

Protein Analysis

301

Amino Acids

34.41

Weight (kDa)

5.48

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STPPase_N PF16891 4 - 49 1.6e-15 Serine-threonine protein phosphatase N-terminal domain
Metallophos PF00149 52 - 245 2.2e-50 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013806)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43380 AT5G43380 AT5G43380
fragaria_vesca FvH4_6g09230
malus_domestica MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis pycom04g15910 pycom12g18130
rosa_chinensis RchiOBHm_Chr3g0459571
rosa_laevigata RLG00000025079
rosa_multiflora Rmu_sc0000240.1_g000007
rosa_roxburghii Rroxscaffold_6G00420180
rosa_rugosa Rorug03G0036400
rosa_samantha Rh3DG099000
rosa_wichuraiana Rw0G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 821
AccI GTMKAC 2 cut(s) 264, 656
AciI CCGC 3 cut(s) 88, 468, 801
AclWI GGATC 2 cut(s) 599, 714
AcsI RAATTY 2 cut(s) 683, 749
AfaI GTAC 2 cut(s) 567, 892
AfiI CCNNNNNNNGG 2 cut(s) 575, 881
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 3 cut(s) 143, 737, 811
AjnI CCWGG 2 cut(s) 573, 726
AluBI AGCT 5 cut(s) 152, 538, 545, 769, 865
AluI AGCT 5 cut(s) 152, 538, 545, 769, 865
Alw26I GTCTC 4 cut(s) 71, 249, 281, 609
AlwI GGATC 2 cut(s) 599, 714
AoxI GGCC 2 cut(s) 505, 554
ApeKI GCWGC 3 cut(s) 127, 149, 766
ApoI RAATTY 2 cut(s) 683, 749
AseI ATTAAT 1 cut(s) 159
Asp700I GAANNNNTTC 2 cut(s) 117, 434
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 571, 665
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 182, 644, 766
AvaII GGWCC 2 cut(s) 571, 665
BaeGI GKGCMC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 821
BbvI GCAGC 3 cut(s) 139, 161, 778
BccI CCATC 2 cut(s) 377, 734
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 2 cut(s) 575, 728
BcnI CCSGG 1 cut(s) 719
BcoDI GTCTC 4 cut(s) 71, 249, 281, 609
BfaI CTAG 2 cut(s) 71, 866
BfuAI ACCTGC 1 cut(s) 809
BglII AGATCT 2 cut(s) 432, 486
BisI GCNGC 4 cut(s) 128, 150, 468, 767
BlsI GCNGC 4 cut(s) 129, 151, 469, 768
Bme1390I CCNGG 3 cut(s) 575, 719, 728
Bme18I GGWCC 2 cut(s) 571, 665
BmgT120I GGNCC 2 cut(s) 571, 665
BmiI GGNNCC 2 cut(s) 353, 823
BmrFI CCNGG 3 cut(s) 575, 719, 728
BmsI GCATC 2 cut(s) 4, 223
BoxI GACNNNNGTC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 346, 528, 574, 875
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 881
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 2 cut(s) 575, 728
BseDI CCNNGG 4 cut(s) 346, 528, 574, 875
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 575, 881
BseMII CTCAG 3 cut(s) 136, 507, 553
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 3 cut(s) 139, 161, 778
BsgI GTGCAG 1 cut(s) 771
BshFI GGCC 2 cut(s) 507, 556
BshNI GGYRCC 1 cut(s) 821
BsiSI CCGG 4 cut(s) 421, 557, 569, 718
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 575, 881
BsmAI GTCTC 4 cut(s) 71, 249, 281, 609
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 507, 556
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 5 cut(s) 193, 432, 486, 604, 706
BspACI CCGC 3 cut(s) 88, 468, 801
BspANI GGCC 2 cut(s) 507, 556
BspCNI CTCAG 3 cut(s) 135, 508, 552
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 353, 823
BspMI ACCTGC 1 cut(s) 809
BspPI GGATC 2 cut(s) 599, 714
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 4 cut(s) 346, 528, 574, 875
BssMI GATC 5 cut(s) 193, 432, 486, 604, 706
BssNAI GTATAC 1 cut(s) 657
BssT1I CCWWGG 2 cut(s) 528, 875
Bst1107I GTATAC 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 575, 728
Bst4CI ACNGT 1 cut(s) 895
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 3 cut(s) 122, 516, 539
BstEII GGTNACC 1 cut(s) 772
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 5 cut(s) 196, 435, 489, 607, 709
BstMAI GTCTC 4 cut(s) 71, 249, 281, 609
BstMBI GATC 5 cut(s) 193, 432, 486, 604, 706
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 575, 728
BstNSI RCATGY 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 83
BstPI GGTNACC 1 cut(s) 772
BstSCI CCNGG 3 cut(s) 573, 717, 726
BstSLI GKGCMC 1 cut(s) 724
BstV1I GCAGC 3 cut(s) 139, 161, 778
BstX2I RGATCY 4 cut(s) 432, 486, 604, 706
BstYI RGATCY 4 cut(s) 432, 486, 604, 706
BstZ17I GTATAC 1 cut(s) 657
BsuRI GGCC 2 cut(s) 507, 556
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 1 cut(s) 497
CciI TCATGA 1 cut(s) 190
CfoI GCGC 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 571, 665
CseI GACGC 3 cut(s) 88, 395, 406
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 2 cut(s) 566, 891
CviAII CATG 6 cut(s) 179, 191, 496, 500, 698, 703
CviQI GTAC 2 cut(s) 566, 891
DdeI CTNAG 3 cut(s) 122, 516, 539
DpnI GATC 5 cut(s) 195, 434, 488, 606, 708
DpnII GATC 5 cut(s) 193, 432, 486, 604, 706
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 528, 875
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 571, 665
Eco91I GGTNACC 1 cut(s) 772
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoO65I GGTNACC 1 cut(s) 772
EcoRI GAATTC 2 cut(s) 683, 749
EcoRII CCWGG 2 cut(s) 573, 726
EcoT14I CCWWGG 2 cut(s) 528, 875
EcoT22I ATGCAT 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 528, 875
FaeI CATG 6 cut(s) 182, 194, 499, 503, 701, 706
FaqI GGGAC 1 cut(s) 591
FatI CATG 6 cut(s) 178, 190, 495, 499, 697, 702
FauNDI CATATG 1 cut(s) 713
FblI GTMKAC 2 cut(s) 264, 656
Fnu4HI GCNGC 4 cut(s) 128, 150, 468, 767
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 4 cut(s) 128, 150, 468, 767
FspBI CTAG 2 cut(s) 71, 866
GlaI GCGC 1 cut(s) 364
GluI GCNGC 4 cut(s) 128, 150, 468, 767
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 2 cut(s) 507, 556
HapII CCGG 4 cut(s) 421, 557, 569, 718
HgaI GACGC 3 cut(s) 88, 395, 406
HhaI GCGC 1 cut(s) 365
Hin1II CATG 6 cut(s) 182, 194, 499, 503, 701, 706
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 3 cut(s) 22, 64, 387
HpaII CCGG 4 cut(s) 421, 557, 569, 718
HphI GGTGA 3 cut(s) 182, 644, 766
Hpy166II GTNNAC 3 cut(s) 49, 265, 657
Hpy188I TCNGA 5 cut(s) 27, 254, 347, 542, 604
Hpy188III TCNNGA 6 cut(s) 140, 191, 326, 515, 608, 688
Hpy8I GTNNAC 3 cut(s) 49, 265, 657
Hpy99I CGWCG 2 cut(s) 398, 411
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 895
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 5 cut(s) 495, 499, 758, 788, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 3 cut(s) 122, 516, 539
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 6 cut(s) 182, 194, 499, 503, 701, 706
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 5 cut(s) 193, 432, 486, 604, 706
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 3 cut(s) 139, 161, 778
LweI GCATC 2 cut(s) 4, 223
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 2 cut(s) 71, 866
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 4 cut(s) 100, 587, 743, 772
MalI GATC 5 cut(s) 195, 434, 488, 606, 708
MboI GATC 5 cut(s) 193, 432, 486, 604, 706
MboII GAAGA 5 cut(s) 128, 427, 442, 481, 749
MflI RGATCY 4 cut(s) 432, 486, 604, 706
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 6 cut(s) 143, 238, 451, 683, 749, 901
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 9 cut(s) 31, 47, 78, 263, 341, 350, 353, 546, 875
Mph1103I ATGCAT 1 cut(s) 501
MroXI GAANNNNTTC 2 cut(s) 117, 434
MseI TTAA 4 cut(s) 159, 450, 621, 827
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 4 cut(s) 421, 557, 569, 718
MspR9I CCNGG 3 cut(s) 575, 719, 728
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 2 cut(s) 575, 728
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 719
NdeI CATATG 1 cut(s) 713
NdeII GATC 5 cut(s) 193, 432, 486, 604, 706
NlaIII CATG 6 cut(s) 182, 194, 499, 503, 701, 706
NlaIV GGNNCC 2 cut(s) 353, 823
NmuCI GTSAC 3 cut(s) 100, 587, 772
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 499
PaeI GCATGC 1 cut(s) 499
PagI TCATGA 1 cut(s) 190
PaqCI CACCTGC 1 cut(s) 809
PctI GAATGC 1 cut(s) 365
PdmI GAANNNNTTC 2 cut(s) 117, 434
PfeI GAWTC 3 cut(s) 22, 64, 387
PkrI GCNGC 4 cut(s) 129, 151, 469, 768
Ppu21I YACGTR 1 cut(s) 244
PshAI GACNNNNGTC 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 573, 726
PspEI GGTNACC 1 cut(s) 772
PspGI CCWGG 2 cut(s) 573, 726
PspN4I GGNNCC 2 cut(s) 353, 823
PspPI GGNCC 2 cut(s) 571, 665
PsuI RGATCY 4 cut(s) 432, 486, 604, 706
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 2 cut(s) 567, 892
RsaNI GTAC 2 cut(s) 566, 891
SaqAI TTAA 4 cut(s) 159, 450, 621, 827
SatI GCNGC 4 cut(s) 128, 150, 468, 767
Sau3AI GATC 5 cut(s) 193, 432, 486, 604, 706
Sau96I GGNCC 2 cut(s) 571, 665
ScrFI CCNGG 3 cut(s) 575, 719, 728
SduI GDGCHC 1 cut(s) 724
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 2 cut(s) 4, 223
SinI GGWCC 2 cut(s) 571, 665
SphI GCATGC 1 cut(s) 499
Sse9I AATT 6 cut(s) 143, 238, 451, 683, 749, 901
SsiI CCGC 3 cut(s) 88, 468, 801
SspMI CTAG 2 cut(s) 71, 866
StyD4I CCNGG 3 cut(s) 573, 717, 726
StyI CCWWGG 2 cut(s) 528, 875
TaaI ACNGT 1 cut(s) 895
TaiI ACGT 1 cut(s) 246
TaqII GACCGA 1 cut(s) 95
TasI AATT 6 cut(s) 143, 238, 451, 683, 749, 901
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 3 cut(s) 22, 64, 387
Tru1I TTAA 4 cut(s) 159, 450, 621, 827
Tru9I TTAA 4 cut(s) 159, 450, 621, 827
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 100, 587, 772
TseI GCWGC 3 cut(s) 127, 149, 766
Tsp45I GTSAC 3 cut(s) 100, 587, 772
TspDTI ATGAA 1 cut(s) 707
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 571, 665
VspI ATTAAT 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 2 cut(s) 683, 749
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 2 cut(s) 264, 656
XmnI GAANNNNTTC 2 cut(s) 117, 434
XspI CTAG 2 cut(s) 71, 866
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.