Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013806

Physical Location & Seq

Genomic Coordinates Reverse (-)

41501362 .. 41503574

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGGATTGGATGCCCTGATTCAGAGATTGCTGGAGGGAAAGGTCAACAGAGGCAAAAGGATTCCTCTAGTAGAGACCGAAGTCCGCCAACTTTGCGTCACTGCTAAAGAAGTCTTTCTCAGGCAGCCTAATCTTCTTGAATTGGCAGCTCCCATTAATGTGTGTGAATTGGGGTGTGCAGGTGATATACATGGTCAATATCATGATCTCTTGCGACTTTTTGAGTTAGGTGGCTTTCCACCTGATGCGAATTACGTGTTTCTTGGAGACTATGTAGACAGAGGAAAACAGAGCGTAGAGACAATATGCCTTCTCCTTGCTTACAAAATAAAATACCCAGACAACTTTTTCCTCCTCCGAGGGAACCACGAATGCGCTTCCATCAACAGAATATATGGATTCTACGACGAGTGTAAGCGTCGGTTCAGCGTCCGGCTATGGAAGATCTTCACAGACTGCTTTAATTGTTTGCCTGTCGCTGCAATCATTGATGACAAGATCTTCTGCATGCATGGTGGCCTATCTCCTGAGTTGGAAACCTTGGATAAGCTCAGAGCTATACAGAGGCCGGTTGATGTGCCCGACCAGGGATTATTATGTGACATTCTTTGGTCAGATCCAGATAGAGACATTAAAGGGTGGGGTGAGAATGATCGGGGTGTTTCGTATACTTTTGGACCTGATAGGGTGGCTGAATTCTTGATGAAACATGATATGGATCTCATATGCCGGGCACACCAGGTTGTTGAAGATGGTTACGAATTCTTTGCAGAAAGGCAGCTGGTTACCATATTCTCTGCACCAAACTATTGCGGAGAGTTCAACAATGCAGGTGCCTTAATGAGAGTGGATAAGAGTTTGCTTTGCTCATTTCAGCTAGTGAAACCTTGGAGAGGGAAAGGTACAGTAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

306

Amino Acids

34.88

Weight (kDa)

5.37

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	4 - 49	1.6e-15	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	60 - 250	1e-48	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43380 AT5G43380 AT5G43380
fragaria_vesca	FvH4_6g09230
malus_domestica	MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica	Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis	pycom04g15910 pycom12g18130
rosa_chinensis	RchiOBHm_Chr3g0459571
rosa_laevigata	RLG00000025079
rosa_multiflora	Rmu_sc0000240.1_g000007
rosa_roxburghii	Rroxscaffold_6G00420180
rosa_rugosa	Rorug03G0036400
rosa_samantha	Rh3DG099000
rosa_wichuraiana	Rw0G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	173, 824
Acc36I	ACCTGC	2 cut(s)	173, 824
AccB1I	GGYRCC	1 cut(s)	836
AccI	GTMKAC	2 cut(s)	279, 671
AciI	CCGC	2 cut(s)	88, 816
AclWI	GGATC	2 cut(s)	614, 729
AcsI	RAATTY	2 cut(s)	698, 764
AfaI	GTAC	1 cut(s)	907
AfiI	CCNNNNNNNGG	2 cut(s)	590, 896
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	143, 752, 826
AjnI	CCWGG	2 cut(s)	588, 741
AluBI	AGCT	5 cut(s)	152, 553, 560, 784, 880
AluI	AGCT	5 cut(s)	152, 553, 560, 784, 880
Alw26I	GTCTC	4 cut(s)	71, 264, 296, 624
AlwI	GGATC	2 cut(s)	614, 729
AoxI	GGCC	2 cut(s)	520, 569
ApeKI	GCWGC	4 cut(s)	127, 149, 482, 781
ApoI	RAATTY	2 cut(s)	698, 764
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	2 cut(s)	117, 449
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	680
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	2 cut(s)	197, 659
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	2 cut(s)	585, 739
BanI	GGYRCC	1 cut(s)	836
BbvI	GCAGC	4 cut(s)	139, 161, 469, 793
BccI	CCATC	2 cut(s)	392, 749
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	2 cut(s)	590, 743
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	4 cut(s)	71, 264, 296, 624
BfaI	CTAG	2 cut(s)	71, 881
BfuAI	ACCTGC	2 cut(s)	173, 824
BglII	AGATCT	2 cut(s)	447, 501
BisI	GCNGC	4 cut(s)	128, 150, 483, 782
BlsI	GCNGC	4 cut(s)	129, 151, 484, 783
Bme1390I	CCNGG	3 cut(s)	590, 734, 743
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	2 cut(s)	368, 838
BmrFI	CCNGG	3 cut(s)	590, 734, 743
BmsI	GCATC	2 cut(s)	4, 238
BoxI	GACNNNNGTC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	361, 543, 589, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 896
Bse118I	RCCGGY	1 cut(s)	571
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	2 cut(s)	590, 743
BseDI	CCNNGG	4 cut(s)	361, 543, 589, 890
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	590, 896
BseMII	CTCAG	3 cut(s)	136, 522, 568
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	2 cut(s)	585, 739
BseXI	GCAGC	4 cut(s)	139, 161, 469, 793
BsgI	GTGCAG	2 cut(s)	201, 786
BshFI	GGCC	2 cut(s)	522, 571
BshNI	GGYRCC	1 cut(s)	836
BsiSI	CCGG	3 cut(s)	436, 572, 733
BslI	CCNNNNNNNGG	2 cut(s)	590, 896
BsmAI	GTCTC	4 cut(s)	71, 264, 296, 624
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	522, 571
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	585, 739
Bsp143I	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
BspACI	CCGC	2 cut(s)	88, 816
BspANI	GGCC	2 cut(s)	522, 571
BspCNI	CTCAG	3 cut(s)	135, 523, 567
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	368, 838
BspMI	ACCTGC	2 cut(s)	173, 824
BspPI	GGATC	2 cut(s)	614, 729
BspT107I	GGYRCC	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	4 cut(s)	361, 543, 589, 890
BssMI	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
BssNAI	GTATAC	1 cut(s)	672
BssT1I	CCWWGG	2 cut(s)	543, 890
Bst1107I	GTATAC	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	590, 743
Bst4CI	ACNGT	1 cut(s)	910
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	3 cut(s)	122, 531, 554
BstEII	GGTNACC	1 cut(s)	787
BstENI	CCTNNNNNAGG	1 cut(s)	894
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	6 cut(s)	211, 450, 504, 622, 658, 724
BstMAI	GTCTC	4 cut(s)	71, 264, 296, 624
BstMBI	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	2 cut(s)	590, 743
BstNSI	RCATGY	1 cut(s)	514
BstPAI	GACNNNNGTC	1 cut(s)	83
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	3 cut(s)	588, 732, 741
BstSLI	GKGCMC	2 cut(s)	585, 739
BstV1I	GCAGC	4 cut(s)	139, 161, 469, 793
BstX2I	RGATCY	4 cut(s)	447, 501, 619, 721
BstYI	RGATCY	4 cut(s)	447, 501, 619, 721
BstZ17I	GTATAC	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	522, 571
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	2 cut(s)	173, 824
Cac8I	GCNNGC	1 cut(s)	512
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	680
CseI	GACGC	3 cut(s)	88, 410, 421
CsiI	ACCWGGT	1 cut(s)	741
Csp6I	GTAC	1 cut(s)	906
CviAII	CATG	5 cut(s)	194, 206, 511, 515, 713
CviQI	GTAC	1 cut(s)	906
DdeI	CTNAG	3 cut(s)	122, 531, 554
DpnI	GATC	6 cut(s)	210, 449, 503, 621, 657, 723
DpnII	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	543, 890
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	894
EcoO65I	GGTNACC	1 cut(s)	787
EcoRI	GAATTC	2 cut(s)	698, 764
EcoRII	CCWGG	2 cut(s)	588, 741
EcoT14I	CCWWGG	2 cut(s)	543, 890
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	543, 890
FaeI	CATG	5 cut(s)	197, 209, 514, 518, 716
FatI	CATG	5 cut(s)	193, 205, 510, 514, 712
FauNDI	CATATG	1 cut(s)	728
FblI	GTMKAC	2 cut(s)	279, 671
Fnu4HI	GCNGC	4 cut(s)	128, 150, 483, 782
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	128, 150, 483, 782
FspBI	CTAG	2 cut(s)	71, 881
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	4 cut(s)	128, 150, 483, 782
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	522, 571
HapII	CCGG	3 cut(s)	436, 572, 733
HgaI	GACGC	3 cut(s)	88, 410, 421
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	5 cut(s)	197, 209, 514, 518, 716
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	22, 64, 402
HpaII	CCGG	3 cut(s)	436, 572, 733
HphI	GGTGA	2 cut(s)	197, 659
Hpy166II	GTNNAC	3 cut(s)	49, 280, 672
Hpy188I	TCNGA	4 cut(s)	27, 362, 557, 619
Hpy188III	TCNNGA	5 cut(s)	140, 206, 530, 623, 703
Hpy8I	GTNNAC	3 cut(s)	49, 280, 672
Hpy99I	CGWCG	2 cut(s)	413, 426
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	7 cut(s)	182, 485, 510, 514, 773, 803, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	122, 531, 554
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	197, 209, 514, 518, 716
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	139, 161, 469, 793
LweI	GCATC	2 cut(s)	4, 238
MabI	ACCWGGT	1 cut(s)	741
MaeI	CTAG	2 cut(s)	71, 881
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	100, 602, 758, 787
MalI	GATC	6 cut(s)	210, 449, 503, 621, 657, 723
MboI	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
MboII	GAAGA	5 cut(s)	128, 442, 457, 496, 764
MflI	RGATCY	4 cut(s)	447, 501, 619, 721
MhlI	GDGCHC	2 cut(s)	585, 739
MluCI	AATT	7 cut(s)	143, 170, 253, 466, 698, 764, 916
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	9 cut(s)	31, 47, 78, 278, 356, 365, 368, 561, 890
Mph1103I	ATGCAT	1 cut(s)	516
MroXI	GAANNNNTTC	2 cut(s)	117, 449
MseI	TTAA	4 cut(s)	159, 465, 636, 842
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	3 cut(s)	436, 572, 733
MspR9I	CCNGG	3 cut(s)	590, 734, 743
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	590, 743
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	734
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
NlaIII	CATG	5 cut(s)	197, 209, 514, 518, 716
NlaIV	GGNNCC	2 cut(s)	368, 838
NmuCI	GTSAC	2 cut(s)	100, 602
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	514
PagI	TCATGA	1 cut(s)	205
PaqCI	CACCTGC	2 cut(s)	173, 824
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	117, 449
PfeI	GAWTC	3 cut(s)	22, 64, 402
PkrI	GCNGC	4 cut(s)	129, 151, 484, 783
Ppu21I	YACGTR	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	588, 741
PspEI	GGTNACC	1 cut(s)	787
PspGI	CCWGG	2 cut(s)	588, 741
PspN4I	GGNNCC	2 cut(s)	368, 838
PspPI	GGNCC	1 cut(s)	680
PsuI	RGATCY	4 cut(s)	447, 501, 619, 721
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	1 cut(s)	907
RsaNI	GTAC	1 cut(s)	906
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	159, 465, 636, 842
SatI	GCNGC	4 cut(s)	128, 150, 483, 782
Sau3AI	GATC	6 cut(s)	208, 447, 501, 619, 655, 721
Sau96I	GGNCC	1 cut(s)	680
ScrFI	CCNGG	3 cut(s)	590, 734, 743
SduI	GDGCHC	2 cut(s)	585, 739
SexAI	ACCWGGT	1 cut(s)	741
SfaNI	GCATC	2 cut(s)	4, 238
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	161
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	7 cut(s)	143, 170, 253, 466, 698, 764, 916
SsiI	CCGC	2 cut(s)	88, 816
SspMI	CTAG	2 cut(s)	71, 881
StyD4I	CCNGG	3 cut(s)	588, 732, 741
StyI	CCWWGG	2 cut(s)	543, 890
TaaI	ACNGT	1 cut(s)	910
TaiI	ACGT	1 cut(s)	261
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	7 cut(s)	143, 170, 253, 466, 698, 764, 916
TfiI	GAWTC	3 cut(s)	22, 64, 402
Tru1I	TTAA	4 cut(s)	159, 465, 636, 842
Tru9I	TTAA	4 cut(s)	159, 465, 636, 842
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	100, 602
TseI	GCWGC	4 cut(s)	127, 149, 482, 781
Tsp45I	GTSAC	2 cut(s)	100, 602
TspDTI	ATGAA	1 cut(s)	722
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	894
XapI	RAATTY	2 cut(s)	698, 764
XceI	RCATGY	1 cut(s)	514
XmiI	GTMKAC	2 cut(s)	279, 671
XmnI	GAANNNNTTC	2 cut(s)	117, 449
XspI	CTAG	2 cut(s)	71, 881
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.