Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013806

Physical Location & Seq

Genomic Coordinates Reverse (-)

41825885 .. 41827731

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGGATTGGATACCCTGATTCAGAGATTGCTGGAGGGAAAGGTCAACAGAGGCAAAAGGATTCCTCTAGTAGAGACCGAAGTCCGCCAACTTTGCGTCACTGCTAAAGAAGTCTTTCTCAGGCAGCCTAATCTTCTTGAATTGGCAGCTCCCATTAATGTTTGTGGTGATATACATGGTCAATATCATGATCTCTTGCGACTTTTTGAGTTAGGTGGCTTTCCACCTGAATCGAATTACGTGTTTCTTGGAGACTATGTAGACAGAGGAAAACAGAGCGTAGAGACAATATGCCTTCTCCTTGCTTACAAAATAAAATATCCAGACAACTTTTTCCTCCTCCGAGGGAACCACGAATGCGCTTCCATCAACAGAATATATGGATTCTACGACGAGTGTAAGCGTCGGTTCAGCGTCCGGCTATGGAAAATCTTCACAGACTGCTTTAATTGTTTGCCTGTCGCTGCAATCATTGATGACAAGATCTTCTGCATGCATGGTGGCCTATCTCCCGAGTTGGAAACTTTGGATAAGCTCAGAGCTATACAGAGGCCGGTTGATGTACCGGACCAGGGACTATTATGTGACATTCTTTGGTCAGATCCAGATAGAGACATTAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCATATACTTTTGGACCTGATAGGGTGGCTGAATTCTTGATGAAACATGATATGGATCTCATATGCCGGGCACACCAGGTTGTTGAAGATGGTTACGAATTCTTTGCAGAAAGGCAGCTGGTCACCATATTCTCTGCACCAAACTATTGCGGAGAGTTCAACAATGCGGGTGCCTTAATGAGAGTGGATAAGAGTTTGCTTTGCTCATTTCAGCTAGTGAAACCTTGGAGAGGGAAAGGAACAGTAGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

302

Amino Acids

34.44

Weight (kDa)

5.48

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	4 - 49	1.7e-15	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	52 - 245	8.4e-51	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43380 AT5G43380 AT5G43380
fragaria_vesca	FvH4_6g09230
malus_domestica	MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica	Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis	pycom04g15910 pycom12g18130
rosa_chinensis	RchiOBHm_Chr3g0459571
rosa_laevigata	RLG00000025079
rosa_multiflora	Rmu_sc0000240.1_g000007
rosa_roxburghii	Rroxscaffold_6G00420180
rosa_rugosa	Rorug03G0036400
rosa_samantha	Rh3DG099000
rosa_wichuraiana	Rw0G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	3 cut(s)	88, 801, 818
AclWI	GGATC	2 cut(s)	599, 714
AcsI	RAATTY	2 cut(s)	683, 749
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	2 cut(s)	575, 881
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	143, 737, 811
AjnI	CCWGG	2 cut(s)	573, 726
AluBI	AGCT	5 cut(s)	152, 538, 545, 769, 865
AluI	AGCT	5 cut(s)	152, 538, 545, 769, 865
Alw26I	GTCTC	4 cut(s)	71, 249, 281, 609
AlwI	GGATC	2 cut(s)	599, 714
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	505, 554
ApeKI	GCWGC	4 cut(s)	127, 149, 467, 766
ApoI	RAATTY	2 cut(s)	683, 749
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	2 cut(s)	117, 434
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	571, 665
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	3 cut(s)	182, 644, 766
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	571, 665
BaeGI	GKGCMC	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	821
BbvI	GCAGC	4 cut(s)	139, 161, 454, 778
BccI	CCATC	2 cut(s)	377, 734
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	2 cut(s)	575, 728
BciVI	GTATCC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	4 cut(s)	71, 249, 281, 609
BfaI	CTAG	2 cut(s)	71, 866
BfuI	GTATCC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	4 cut(s)	128, 150, 468, 767
BlsI	GCNGC	4 cut(s)	129, 151, 469, 768
Bme1390I	CCNGG	3 cut(s)	575, 719, 728
Bme18I	GGWCC	2 cut(s)	571, 665
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	571, 665
BmiI	GGNNCC	2 cut(s)	353, 823
BmrFI	CCNGG	3 cut(s)	575, 719, 728
BoxI	GACNNNNGTC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	346, 574, 875
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 881
Bse118I	RCCGGY	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	575, 728
BseDI	CCNNGG	3 cut(s)	346, 574, 875
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	575, 881
BseMII	CTCAG	2 cut(s)	136, 553
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	4 cut(s)	139, 161, 454, 778
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	2 cut(s)	507, 556
BshNI	GGYRCC	1 cut(s)	821
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	4 cut(s)	421, 557, 569, 718
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	2 cut(s)	575, 881
BsmAI	GTCTC	4 cut(s)	71, 249, 281, 609
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	507, 556
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	193, 486, 604, 706
BspACI	CCGC	3 cut(s)	88, 801, 818
BspANI	GGCC	2 cut(s)	507, 556
BspCNI	CTCAG	2 cut(s)	135, 552
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	353, 823
BspPI	GGATC	2 cut(s)	599, 714
BspT107I	GGYRCC	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	556
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	346, 574, 875
BssMI	GATC	4 cut(s)	193, 486, 604, 706
BssT1I	CCWWGG	1 cut(s)	875
Bst2UI	CCWGG	2 cut(s)	575, 728
Bst4CI	ACNGT	1 cut(s)	895
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	122, 539
BstEII	GGTNACC	1 cut(s)	772
BstENI	CCTNNNNNAGG	1 cut(s)	879
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	4 cut(s)	196, 489, 607, 709
BstMAI	GTCTC	4 cut(s)	71, 249, 281, 609
BstMBI	GATC	4 cut(s)	193, 486, 604, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	2 cut(s)	575, 728
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	83
BstPI	GGTNACC	1 cut(s)	772
BstSCI	CCNGG	3 cut(s)	573, 717, 726
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	4 cut(s)	139, 161, 454, 778
BstX2I	RGATCY	3 cut(s)	486, 604, 706
BstYI	RGATCY	3 cut(s)	486, 604, 706
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	507, 556
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	497
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	571, 665
CseI	GACGC	3 cut(s)	88, 395, 406
CsiI	ACCWGGT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	5 cut(s)	179, 191, 496, 500, 698
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	2 cut(s)	122, 539
DpnI	GATC	4 cut(s)	195, 488, 606, 708
DpnII	GATC	4 cut(s)	193, 486, 604, 706
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	875
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	571, 665
Eco88I	CYCGRG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	879
EcoO65I	GGTNACC	1 cut(s)	772
EcoRI	GAATTC	2 cut(s)	683, 749
EcoRII	CCWGG	2 cut(s)	573, 726
EcoT14I	CCWWGG	1 cut(s)	875
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	875
FaeI	CATG	5 cut(s)	182, 194, 499, 503, 701
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	178, 190, 495, 499, 697
FauI	CCCGC	1 cut(s)	811
FauNDI	CATATG	1 cut(s)	713
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	128, 150, 468, 767
Fsp4HI	GCNGC	4 cut(s)	128, 150, 468, 767
FspBI	CTAG	2 cut(s)	71, 866
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	4 cut(s)	128, 150, 468, 767
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	507, 556
HapII	CCGG	4 cut(s)	421, 557, 569, 718
HgaI	GACGC	3 cut(s)	88, 395, 406
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	5 cut(s)	182, 194, 499, 503, 701
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	22, 64, 233, 387, 899
HpaII	CCGG	4 cut(s)	421, 557, 569, 718
HphI	GGTGA	3 cut(s)	182, 644, 766
Hpy166II	GTNNAC	2 cut(s)	49, 265
Hpy188I	TCNGA	4 cut(s)	27, 347, 542, 604
Hpy188III	TCNNGA	7 cut(s)	140, 191, 326, 515, 608, 688, 903
Hpy8I	GTNNAC	2 cut(s)	49, 265
Hpy99I	CGWCG	2 cut(s)	398, 411
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	895
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	5 cut(s)	470, 495, 499, 758, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	2 cut(s)	122, 539
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	182, 194, 499, 503, 701
HspAI	GCGC	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	193, 486, 604, 706
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	139, 161, 454, 778
MabI	ACCWGGT	1 cut(s)	726
MaeI	CTAG	2 cut(s)	71, 866
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	4 cut(s)	100, 587, 743, 772
MalI	GATC	4 cut(s)	195, 488, 606, 708
MboI	GATC	4 cut(s)	193, 486, 604, 706
MboII	GAAGA	4 cut(s)	128, 427, 481, 749
MflI	RGATCY	3 cut(s)	486, 604, 706
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	5 cut(s)	143, 238, 451, 683, 749
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	9 cut(s)	31, 47, 78, 263, 341, 350, 353, 546, 875
Mph1103I	ATGCAT	1 cut(s)	501
MroXI	GAANNNNTTC	2 cut(s)	117, 434
MseI	TTAA	4 cut(s)	159, 450, 621, 827
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	4 cut(s)	421, 557, 569, 718
MspR9I	CCNGG	3 cut(s)	575, 719, 728
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	575, 728
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	719
NdeI	CATATG	1 cut(s)	713
NdeII	GATC	4 cut(s)	193, 486, 604, 706
NlaIII	CATG	5 cut(s)	182, 194, 499, 503, 701
NlaIV	GGNNCC	2 cut(s)	353, 823
NmuCI	GTSAC	3 cut(s)	100, 587, 772
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	190
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	2 cut(s)	117, 434
PfeI	GAWTC	5 cut(s)	22, 64, 233, 387, 899
PkrI	GCNGC	4 cut(s)	129, 151, 469, 768
Ppu21I	YACGTR	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	573, 726
PspEI	GGTNACC	1 cut(s)	772
PspGI	CCWGG	2 cut(s)	573, 726
PspN4I	GGNNCC	2 cut(s)	353, 823
PspPI	GGNCC	2 cut(s)	571, 665
PsuI	RGATCY	3 cut(s)	486, 604, 706
PvuII	CAGCTG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SaqAI	TTAA	4 cut(s)	159, 450, 621, 827
SatI	GCNGC	4 cut(s)	128, 150, 468, 767
Sau3AI	GATC	4 cut(s)	193, 486, 604, 706
Sau96I	GGNCC	2 cut(s)	571, 665
ScrFI	CCNGG	3 cut(s)	575, 719, 728
SduI	GDGCHC	1 cut(s)	724
SexAI	ACCWGGT	1 cut(s)	726
SinI	GGWCC	2 cut(s)	571, 665
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	5 cut(s)	143, 238, 451, 683, 749
SsiI	CCGC	3 cut(s)	88, 801, 818
SspMI	CTAG	2 cut(s)	71, 866
StyD4I	CCNGG	3 cut(s)	573, 717, 726
StyI	CCWWGG	1 cut(s)	875
TaaI	ACNGT	1 cut(s)	895
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	236
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	5 cut(s)	143, 238, 451, 683, 749
TfiI	GAWTC	5 cut(s)	22, 64, 233, 387, 899
Tru1I	TTAA	4 cut(s)	159, 450, 621, 827
Tru9I	TTAA	4 cut(s)	159, 450, 621, 827
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	3 cut(s)	100, 587, 772
TseI	GCWGC	4 cut(s)	127, 149, 467, 766
Tsp45I	GTSAC	3 cut(s)	100, 587, 772
TspDTI	ATGAA	2 cut(s)	642, 707
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	571, 665
VspI	ATTAAT	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	879
XapI	RAATTY	2 cut(s)	683, 749
XceI	RCATGY	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	2 cut(s)	117, 434
XspI	CTAG	2 cut(s)	71, 866
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.