Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0013806

Physical Location & Seq

Genomic Coordinates Forward (+)

44109 .. 47052

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggaaggattggatgccctgattcagagattactggagggaaaggtcaacagaggcaaaaggattcctctagtagagaccgaagtccgccaactttgcgtcactgctaaagaagtctttctcaggcagcctaatcttcttgaattggcagctcccattaatgtttgtggtgatatacatggtcaatatcatgatctcttgcgactttttgagttaggcggctttccacctgatgcgaattacgtgtttctcggagactatgtagacagaggaaaacagagcgtagagacaatatgccttctccttgcttacaaaataaaatatccagacaactttttcctcctccgagggaaccacgaatgcgcttccatcaacagaatatatggattctacgacgagtgtaagcgtcggttcagcgtccggctatggaagatcttcacagactgctttaattgtttgcctgtcgccgcaatcattgatgacaagatcttctgcatgcatggtggcctatctcctgagttggaaaccctggataagctcagagctatacagaggccggttgatgtaccggaccagggactattatgtgacattctttggtcagatccagatagagacattaaagggtggggtgagaatgataggggtgtttcttatacttttggacctgatagggtggctgaattcttgatgaaacatgatatggatctcatatgccgggcacaccaggttgttgaagatggttacgaattctttgcagaaaggcagctggtcaccatattctctgcaccaaactattgcggagagttcaacaatgcaggtgccttaatgagagtggataagagtttgctttgctcatttcagctagtgaaaccttggagagggaaagcacgaagccctaaccctgaaacaaatagccaaaccctgattcaagaagctaaaaaccttgaatctgaatacaaaacccttgaagccttttctgcctccacctcacaccttgaagaactcgatcccagaagtccagaaccggtggccccaccccaagaaccggctggaaacctaccgaaccggccaccggaagcttcatacatctcgcagcaaatattacaccggttcaccaacttccggacctccaatttccaccaaattgtgtcacaagaagctcctcaacctgaagatttaggaaccggaagacatatcacaaaaacaggccaaaaccttgctgaaccggtcgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

412

Amino Acids

46.77

Weight (kDa)

5.35

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43380 AT5G43380 AT5G43380
fragaria_vesca	FvH4_6g09230
malus_domestica	MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica	Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis	pycom04g15910 pycom12g18130
rosa_chinensis	RchiOBHm_Chr3g0459571
rosa_laevigata	RLG00000025079
rosa_multiflora	Rmu_sc0000240.1_g000007
rosa_roxburghii	Rroxscaffold_6G00420180
rosa_rugosa	Rorug03G0036400
rosa_samantha	Rh3DG099000
rosa_wichuraiana	Rw0G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	809
AccB1I	GGYRCC	1 cut(s)	821
AccI	GTMKAC	2 cut(s)	264, 1233
AccIII	TCCGGA	1 cut(s)	1125
AciI	CCGC	4 cut(s)	88, 219, 468, 801
AclWI	GGATC	3 cut(s)	599, 714, 1004
AcoI	YGGCCR	1 cut(s)	1070
AcsI	RAATTY	2 cut(s)	683, 749
AcuI	CTGAAG	1 cut(s)	1194
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	5 cut(s)	575, 881, 1048, 1075, 1125
AflIII	ACRYGT	1 cut(s)	243
AgeI	ACCGGT	3 cut(s)	1027, 1110, 1228
AgsI	TTSAA	7 cut(s)	143, 737, 811, 932, 950, 971, 1001
AjnI	CCWGG	3 cut(s)	528, 573, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
AluBI	AGCT	8 cut(s)	152, 538, 545, 769, 865, 938, 1082, 1163
AluI	AGCT	8 cut(s)	152, 538, 545, 769, 865, 938, 1082, 1163
Alw26I	GTCTC	4 cut(s)	71, 249, 281, 609
AlwI	GGATC	3 cut(s)	599, 714, 1004
Aor13HI	TCCGGA	1 cut(s)	1125
AoxI	GGCC	5 cut(s)	505, 554, 1032, 1070, 1210
ApeKI	GCWGC	4 cut(s)	127, 149, 766, 1096
ApoI	RAATTY	2 cut(s)	683, 749
AseI	ATTAAT	1 cut(s)	159
AsiGI	ACCGGT	3 cut(s)	1027, 1110, 1228
Asp700I	GAANNNNTTC	2 cut(s)	117, 434
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	4 cut(s)	571, 665, 1033, 1128
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	4 cut(s)	182, 644, 766, 1108
AvaII	GGWCC	3 cut(s)	571, 665, 1128
BaeGI	GKGCMC	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	1198
BbvI	GCAGC	4 cut(s)	139, 161, 778, 1108
BccI	CCATC	2 cut(s)	377, 734
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	3 cut(s)	530, 575, 728
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	4 cut(s)	71, 249, 281, 609
BfaI	CTAG	2 cut(s)	71, 866
BfuAI	ACCTGC	1 cut(s)	809
BglII	AGATCT	2 cut(s)	432, 486
BisI	GCNGC	6 cut(s)	128, 150, 220, 468, 767, 1097
BlsI	GCNGC	6 cut(s)	129, 151, 221, 469, 768, 1098
Bme1390I	CCNGG	4 cut(s)	530, 575, 719, 728
Bme18I	GGWCC	3 cut(s)	571, 665, 1128
BmgT120I	GGNCC	4 cut(s)	571, 665, 1033, 1128
BmiI	GGNNCC	4 cut(s)	353, 823, 1035, 1186
BmrFI	CCNGG	4 cut(s)	530, 575, 719, 728
BmsI	GCATC	2 cut(s)	4, 223
BoxI	GACNNNNGTC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	1198
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	346, 528, 574, 875
BsaWI	WCCGGW	7 cut(s)	568, 1027, 1075, 1110, 1125, 1187, 1228
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	5 cut(s)	575, 881, 1048, 1075, 1125
Bse118I	RCCGGY	6 cut(s)	556, 1027, 1048, 1068, 1110, 1228
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	1125
BseBI	CCWGG	3 cut(s)	530, 575, 728
BseDI	CCNNGG	4 cut(s)	346, 528, 574, 875
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	5 cut(s)	575, 881, 1048, 1075, 1125
BseMII	CTCAG	3 cut(s)	136, 507, 553
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	332, 1155
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	4 cut(s)	139, 161, 778, 1108
BsgI	GTGCAG	1 cut(s)	771
Bsh1285I	CGRYCG	1 cut(s)	1233
BshFI	GGCC	5 cut(s)	507, 556, 1034, 1072, 1212
BshNI	GGYRCC	1 cut(s)	821
BshTI	ACCGGT	3 cut(s)	1027, 1110, 1228
BsiEI	CGRYCG	1 cut(s)	1233
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	5 cut(s)	575, 881, 1048, 1075, 1125
BsmAI	GTCTC	4 cut(s)	71, 249, 281, 609
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	5 cut(s)	507, 556, 1034, 1072, 1212
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp13I	TCCGGA	1 cut(s)	1125
Bsp143I	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
BspACI	CCGC	4 cut(s)	88, 219, 468, 801
BspANI	GGCC	5 cut(s)	507, 556, 1034, 1072, 1212
BspCNI	CTCAG	3 cut(s)	135, 508, 552
BspEI	TCCGGA	1 cut(s)	1125
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	4 cut(s)	353, 823, 1035, 1186
BspMI	ACCTGC	1 cut(s)	809
BspPI	GGATC	3 cut(s)	599, 714, 1004
BspT107I	GGYRCC	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	6 cut(s)	556, 1027, 1048, 1068, 1110, 1228
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	6 cut(s)	556, 1027, 1048, 1068, 1110, 1228
BssECI	CCNNGG	4 cut(s)	346, 528, 574, 875
BssMI	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
BssT1I	CCWWGG	1 cut(s)	875
Bst2UI	CCWGG	3 cut(s)	530, 575, 728
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	122, 516, 539
BstEII	GGTNACC	1 cut(s)	772
BstENI	CCTNNNNNAGG	1 cut(s)	879
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	6 cut(s)	196, 435, 489, 607, 709, 1012
BstMAI	GTCTC	4 cut(s)	71, 249, 281, 609
BstMBI	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
BstMCI	CGRYCG	1 cut(s)	1233
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 980
BstNI	CCWGG	3 cut(s)	530, 575, 728
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	83
BstPI	GGTNACC	1 cut(s)	772
BstSCI	CCNGG	4 cut(s)	528, 573, 717, 726
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	4 cut(s)	139, 161, 778, 1108
BstV2I	GAAGAC	1 cut(s)	1198
BstX2I	RGATCY	4 cut(s)	432, 486, 604, 706
BstYI	RGATCY	4 cut(s)	432, 486, 604, 706
BsuRI	GGCC	5 cut(s)	507, 556, 1034, 1072, 1212
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	1 cut(s)	497
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	6 cut(s)	556, 1027, 1048, 1068, 1110, 1228
Cfr13I	GGNCC	4 cut(s)	571, 665, 1033, 1128
CseI	GACGC	3 cut(s)	88, 395, 406
CsiI	ACCWGGT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	566
CspAI	ACCGGT	3 cut(s)	1027, 1110, 1228
CviAII	CATG	5 cut(s)	179, 191, 496, 500, 698
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	3 cut(s)	122, 516, 539
DpnI	GATC	6 cut(s)	195, 434, 488, 606, 708, 1011
DpnII	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
EaeI	YGGCCR	1 cut(s)	1070
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	875
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	571, 665, 1128
Eco57I	CTGAAG	1 cut(s)	1194
Eco91I	GGTNACC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	879
EcoO65I	GGTNACC	1 cut(s)	772
EcoRI	GAATTC	2 cut(s)	683, 749
EcoRII	CCWGG	3 cut(s)	528, 573, 726
EcoT14I	CCWWGG	1 cut(s)	875
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	875
FaeI	CATG	5 cut(s)	182, 194, 499, 503, 701
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	178, 190, 495, 499, 697
FauNDI	CATATG	1 cut(s)	713
FblI	GTMKAC	2 cut(s)	264, 1233
Fnu4HI	GCNGC	6 cut(s)	128, 150, 220, 468, 767, 1097
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	6 cut(s)	128, 150, 220, 468, 767, 1097
FspBI	CTAG	2 cut(s)	71, 866
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	6 cut(s)	128, 150, 220, 468, 767, 1097
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	5 cut(s)	507, 556, 1034, 1072, 1212
HgaI	GACGC	3 cut(s)	88, 395, 406
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	5 cut(s)	182, 194, 499, 503, 701
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	2 cut(s)	49, 1234
HindII	GTYRAC	2 cut(s)	49, 1234
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	5 cut(s)	22, 64, 387, 928, 950
HphI	GGTGA	4 cut(s)	182, 644, 766, 1108
Hpy166II	GTNNAC	4 cut(s)	49, 265, 1116, 1234
Hpy188I	TCNGA	6 cut(s)	27, 254, 347, 542, 604, 955
Hpy188III	TCNNGA	9 cut(s)	140, 191, 326, 515, 608, 688, 932, 1022, 1126
Hpy8I	GTNNAC	4 cut(s)	49, 265, 1116, 1234
Hpy99I	CGWCG	2 cut(s)	398, 411
HpyAV	CCTTC	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	5 cut(s)	495, 499, 758, 788, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 980
HpyF3I	CTNAG	3 cut(s)	122, 516, 539
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	182, 194, 499, 503, 701
HspAI	GCGC	1 cut(s)	363
Kpn2I	TCCGGA	1 cut(s)	1125
Kzo9I	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
LmnI	GCTCC	2 cut(s)	157, 1168
Lsp1109I	GCAGC	4 cut(s)	139, 161, 778, 1108
LweI	GCATC	2 cut(s)	4, 223
MabI	ACCWGGT	1 cut(s)	726
MaeI	CTAG	2 cut(s)	71, 866
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	5 cut(s)	100, 587, 743, 772, 1152
MalI	GATC	6 cut(s)	195, 434, 488, 606, 708, 1011
MboI	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
MboII	GAAGA	8 cut(s)	128, 427, 442, 481, 749, 1013, 1187, 1203
MflI	RGATCY	4 cut(s)	432, 486, 604, 706
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	7 cut(s)	143, 238, 451, 683, 749, 1135, 1146
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	1125
MroXI	GAANNNNTTC	2 cut(s)	117, 434
MseI	TTAA	4 cut(s)	159, 450, 621, 827
MspA1I	CMGCKG	1 cut(s)	769
MspR9I	CCNGG	4 cut(s)	530, 575, 719, 728
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	3 cut(s)	530, 575, 728
MwoI	GCNNNNNNNGC	2 cut(s)	96, 980
NciI	CCSGG	1 cut(s)	719
NdeI	CATATG	1 cut(s)	713
NdeII	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
NlaIII	CATG	5 cut(s)	182, 194, 499, 503, 701
NlaIV	GGNNCC	4 cut(s)	353, 823, 1035, 1186
NmuCI	GTSAC	4 cut(s)	100, 587, 772, 1152
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	809
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	2 cut(s)	117, 434
PfeI	GAWTC	5 cut(s)	22, 64, 387, 928, 950
PinAI	ACCGGT	3 cut(s)	1027, 1110, 1228
PkrI	GCNGC	6 cut(s)	129, 151, 221, 469, 768, 1098
Ppu21I	YACGTR	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	3 cut(s)	528, 573, 726
PspEI	GGTNACC	1 cut(s)	772
PspGI	CCWGG	3 cut(s)	528, 573, 726
PspN4I	GGNNCC	4 cut(s)	353, 823, 1035, 1186
PspPI	GGNCC	4 cut(s)	571, 665, 1033, 1128
PsuI	RGATCY	4 cut(s)	432, 486, 604, 706
PvuII	CAGCTG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SalI	GTCGAC	1 cut(s)	1232
SaqAI	TTAA	4 cut(s)	159, 450, 621, 827
SatI	GCNGC	6 cut(s)	128, 150, 220, 468, 767, 1097
Sau3AI	GATC	6 cut(s)	193, 432, 486, 604, 706, 1009
Sau96I	GGNCC	4 cut(s)	571, 665, 1033, 1128
ScrFI	CCNGG	4 cut(s)	530, 575, 719, 728
SduI	GDGCHC	1 cut(s)	724
SexAI	ACCWGGT	1 cut(s)	726
SfaNI	GCATC	2 cut(s)	4, 223
SinI	GGWCC	3 cut(s)	571, 665, 1128
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	7 cut(s)	143, 238, 451, 683, 749, 1135, 1146
SsiI	CCGC	4 cut(s)	88, 219, 468, 801
SspI	AATATT	1 cut(s)	1104
SspMI	CTAG	2 cut(s)	71, 866
StyD4I	CCNGG	4 cut(s)	528, 573, 717, 726
StyI	CCWWGG	1 cut(s)	875
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	1008, 1233
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	7 cut(s)	143, 238, 451, 683, 749, 1135, 1146
TauI	GCSGC	2 cut(s)	222, 470
TfiI	GAWTC	5 cut(s)	22, 64, 387, 928, 950
Tru1I	TTAA	4 cut(s)	159, 450, 621, 827
Tru9I	TTAA	4 cut(s)	159, 450, 621, 827
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	4 cut(s)	100, 587, 772, 1152
TseI	GCWGC	4 cut(s)	127, 149, 766, 1096
Tsp45I	GTSAC	4 cut(s)	100, 587, 772, 1152
TspDTI	ATGAA	2 cut(s)	707, 1074
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	3 cut(s)	571, 665, 1128
VspI	ATTAAT	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	879
XapI	RAATTY	2 cut(s)	683, 749
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1049
XmiI	GTMKAC	2 cut(s)	264, 1233
XmnI	GAANNNNTTC	2 cut(s)	117, 434
XspI	CTAG	2 cut(s)	71, 866
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.