Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003981

Physical Location & Seq

Genomic Coordinates Forward (+)

17610744 .. 17616907

Gene Structure 6164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

ATGCCGATTAGGCAAATGAAAGATAGCTCTGAGACTCACTTAGTTATCAAAACCCAACCTTTAAAGCACCACAATCCAAAAACCGTTCAAAACGGTAAAATCCCTCCTCCTTCTCCTTCTCCGGTGACGGTGACTACTCCGGCGACGGTTACTCAGAGTCAAGCTTCTTCACCTTCACCACCGTCAAAGAATCGTAGCCGGAGGAGAAACCGTGGTGGAAGAAAATCTGATCAAGGAGATGTTTGTATGAGACCTAGCTCTCGTCCTCGTAAACCGCCACCGCCAAGTCAAACCACTTCCTCCGCCGTCTCCGTCGCCACCGCCGGTGAGATTGTCGCTGTGAATCATCAGATGCAGATGGGTGTTCGTAAAAACTCAAACTTTGCTCCAAGACCTGGATTTGGAACACTTGGAACTAAATGCATTGTTAAAGCTAACCACTTTCTCGCTGATTTGCCTACCAAGGATTTGAATCAGTATGATGTTACAATTACTCCTGAAGTGTCATCAAAGAGTGTTAACAGAGCTATAATTGCTGAGTTAGTTAGACTTTACAAAGAGTCTGATCTCGGGAGGAGACTTCCGGCTTACGATGGCCGGAAAAGTCTTTACACTGCTGGAGAACTTCCTTTTACTTGGAAGGAGTTCAGTGTTAAGATTGTTGATGAAGATGACGGTATCATCAATGGCCCTAAAAGGGAGAGATCATATAAGGTGGCAATCAAGTTTGTTGCACGGGCAAATATGCATCACTTAGGCGAGTTTCTAGCTGGTAAACGGGCAGATTGTCCGCAAGAGGCGGTGCAGATTCTTGATATTGTACTCAGGGAGTTGTCGGTTAAGAGGTTTTGTCCCGTTGGAAGATCTTTCTTTTCGCCTGATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGATATGGCTTCAGCTGCATTCATCGAGCCTCTTCCAGTGATAGAGTTTGTAGCACAGCTTCTTGGAAAGGATGTCTTGTCGAAGCCATTGTCGGATTCTGATCGCGTCAAGATTAAGAAGGGTCTTAGAGGAGTGAAAGTAGAGGTTACTCACAGAGCGAATGTAAGAAGGAAATACCGTGTTGCGGGTTTAACAACTCAACCAACAAGAGAGCTAATGTTTCCAGTAGATGAGAACTGTACTATGAAGTCAGTTATTGAGTATTTCCAAGAGATGTATGGATTCACGATCCAGCACACGCATTTGCCATGTCTCCAAGTTGGAAACCAAAAGAAGGCAAGCTATTTGCCGATGGAGGCATGCAAAATTGTCGAGGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGACTGTCCAACACAACGCATATGATCAAGATCCATATGCAAAGGAGTTTGGCATGAACATAAGCGAAAAGTTAGCTTCTGTTGAAGCTCGTATTCTTCCAGCTCCATGGCTTAAGTATCACGAGAACGGGAAAGAAAAAGATTGTCTCCCGCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATCAACGGGATGACTGTGAGCAGATGGGCCTGTGTTAACTTCTCACGCAGCGTTCAAGAAAACGTTGCTCGTGGATTTTGTAATGAACTTGGTCAGATGTGTGAAGTCTCAGGCATGGAGTTTAATCCAGAACCCGTGATACCAATATATAGTGCGAGGCCCGATCAAGTCGAGAAAGCTCTAAAGCATGTTTATCACACTTCAATGAACAAAACCAAAGGCAAAGAGTTAGAGCTTCTGCTGGCAATATTACCTGATAACAACGGTTCACTTTATGGTGATCTTAAGAGAATCTGTGAAACCGAGCTTGGTTTGATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATCATTTTTGGCGCAGACGTGACTCACCCAGAGAACGGGGAAGAGTCAAGCCCTTCAATCGCTGCTGTTGTTGCTTCTCAAGACTGGCCTGAAGTGACAAAATATGCGGGTTTAGTTTGTGCTCAAGCTCACAGGCAAGAACTTATACAAGATTTGTATAAAACATGGCAAGATCCTGTTCGCGGTACTGTTAGTGGCGGTATGATCAGGGACCTTCTTATCTCATTTAGAAAAGCAACAGGGCAAAAACCGCTTCGAATTATCTTTTATCGTGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGGCTTGTGCATCGCTTGAACCGAATTATCAGCCACCGGTGACATTCATAGTTGTACAGAAGCGTCACCACACTCGTTTGTTTGCTAATAATCACCGAGACAAAAACAGTACTGACCGAAGCGGAAATATCTTACCAGGTACTGTAGTTGACACTAAAATATGTCATCCAACTGAATTCGACTTCTACCTTTGTAGCCATGCGGGTATTCAGGGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATTTCACAGCAGATGGTATTCAATCTCTGACTAACAATCTCTGTTATACCTATGCGCGGTGCACTCGGTCGGTCTCTATAGTTCCTCCAGCGTATTATGCTCATCTTGCAGCATTTCGAGCACGTTTCTACCTGGAACCGGAGATAATGCAAGACAACGGATCACCGGGTAAAAAGAACACGAAAACAACAACTGTCGGAGACGTAGGTGTGAAGCCTTTACCAGCCTTGAAGGAGAATGTGAAGAGAGTAATGTTCTACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010586 GO:0016070 GO:0019827 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0035019 GO:0035198 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0046483 GO:0048509 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0061980 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:0098727 GO:1901360 GO:1901363 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

988

Amino Acids

110.87

Weight (kDa)

9.35

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	140 - 275	5.3e-35	N-terminal domain of argonaute
ArgoL1	PF08699	285 - 335	2.6e-19	Argonaute linker 1 domain
PAZ	PF02170	363 - 467	1.7e-28	PAZ domain
ArgoL2	PF16488	477 - 523	7.7e-16	Argonaute linker 2 domain
ArgoMid	PF16487	534 - 611	1.4e-15	Mid domain of argonaute
Piwi	PF02171	626 - 944	9.8e-116	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43810 AT5G43810 AT5G43810 AT5G43810
fragaria_vesca	FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630
malus_domestica	MD13G1201400.v1.1 MD16G1201200.v1.1
prunus_persica	Prupe.1G022900_v2.0.a1 Prupe.1G022900_v2.0.a1
pyrus_communis	pycom13g17460 pycom16g16970
rosa_chinensis	RchiOBHm_Chr4g0388221 RchiOBHm_Chr4g0388231
rosa_laevigata	RLG00000010073
rosa_roxburghii	Rroxscaffold_5G00334710
rosa_rugosa	Rorug03G0316100 Rorug03G0316200 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316400
rosa_samantha	Rh4AG021700 Rh4BG015800 Rh4CG021900 Rh4DG016600
rosa_wichuraiana	Rw4G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	2064
AccII	CGCG	3 cut(s)	1083, 2292, 2758
AclI	AACGTT	1 cut(s)	1701
AclWI	GGATC	4 cut(s)	1261, 1475, 2276, 2869
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	2618
AcuI	CTGAAG	3 cut(s)	519, 972, 2220
AcyI	GRCGYC	1 cut(s)	2067
AfaI	GTAC	7 cut(s)	822, 1219, 1364, 2296, 2499, 2554, 2584
AflII	CTTAAG	2 cut(s)	1562, 1922
AflIII	ACRYGT	1 cut(s)	1978
AgeI	ACCGGT	1 cut(s)	2479
AjiI	CACGTC	1 cut(s)	2128
AjnI	CCWGG	3 cut(s)	394, 2578, 2832
AjuI	GAANNNNNNNTTGG	2 cut(s)	1929, 1961
Alw21I	GWGCWC	3 cut(s)	2233, 2765, 2824
Alw44I	GTGCAC	1 cut(s)	2761
AlwI	GGATC	4 cut(s)	1261, 1475, 2276, 2869
AlwNI	CAGNNNCTG	2 cut(s)	2005, 2585
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	7 cut(s)	595, 688, 1421, 1665, 1796, 2195, 2666
ApaLI	GTGCAC	1 cut(s)	2761
ApeKI	GCWGC	5 cut(s)	895, 992, 1686, 2171, 2810
ApoI	RAATTY	1 cut(s)	2618
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
AsiGI	ACCGGT	1 cut(s)	2479
Asp700I	GAANNNNTTC	2 cut(s)	644, 2702
AspLEI	GCGC	2 cut(s)	2123, 2758
AspS9I	GGNCC	4 cut(s)	689, 1665, 1797, 2320
AsuC2I	CCSGG	1 cut(s)	2868
AsuII	TTCGAA	2 cut(s)	2365, 2440
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	2320
BaeGI	GKGCMC	1 cut(s)	2765
BaeI	ACNNNNGTAYC	2 cut(s)	2574, 2607
BarI	GAAGNNNNNNTAC	2 cut(s)	1020, 1052
BauI	CACGAG	2 cut(s)	1571, 1707
Bbv12I	GWGCWC	3 cut(s)	2233, 2765, 2824
BbvI	GCAGC	5 cut(s)	907, 979, 1698, 2158, 2822
BccI	CCATC	7 cut(s)	352, 587, 1324, 1656, 2032, 2378, 2708
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	1330, 1364
BciT130I	CCWGG	3 cut(s)	396, 2580, 2834
BciVI	GTATCC	1 cut(s)	2026
BclI	TGATCA	4 cut(s)	229, 1474, 1638, 2313
BcnI	CCSGG	1 cut(s)	2868
BfaI	CTAG	3 cut(s)	255, 767, 2060
BfmI	CTRYAG	3 cut(s)	2077, 2586, 2778
BfrI	CTTAAG	2 cut(s)	1562, 1922
BfuI	GTATCC	1 cut(s)	2026
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	863
BisI	GCNGC	5 cut(s)	896, 993, 1687, 2172, 2811
BlsI	GCNGC	5 cut(s)	897, 994, 1688, 2173, 2812
BmcAI	AGTACT	1 cut(s)	2554
Bme1390I	CCNGG	4 cut(s)	396, 2580, 2834, 2868
Bme18I	GGWCC	1 cut(s)	2320
BmeT110I	CYCGRG	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	2128
BmgT120I	GGNCC	4 cut(s)	689, 1665, 1797, 2320
BmiI	GGNNCC	2 cut(s)	2321, 2838
BmrFI	CCNGG	4 cut(s)	396, 2580, 2834, 2868
BmsI	GCATC	4 cut(s)	342, 757, 2422, 2462
BpmI	CTGGAG	2 cut(s)	639, 2772
Bpu14I	TTCGAA	2 cut(s)	2365, 2440
BpuEI	CTTGAG	2 cut(s)	2172, 2217
BpuMI	CCSGG	1 cut(s)	2868
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	3 cut(s)	471, 1077, 1479
BsaHI	GRCGYC	1 cut(s)	2067
BsaI	GGTCTC	2 cut(s)	244, 2779
BsaJI	CCNNGG	4 cut(s)	211, 462, 1424, 1556
BsaWI	WCCGGW	3 cut(s)	121, 2479, 2839
BsaXI	ACNNNNNCTCC	6 cut(s)	196, 226, 478, 508, 1101, 1131
Bse118I	RCCGGY	2 cut(s)	323, 2479
Bse1I	ACTGG	4 cut(s)	1013, 1202, 2094, 2198
Bse8I	GATNNNNATC	3 cut(s)	471, 1077, 1479
BseBI	CCWGG	3 cut(s)	396, 2580, 2834
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	4 cut(s)	211, 462, 1424, 1556
BseGI	GGATG	4 cut(s)	1054, 1653, 2437, 2608
BseJI	GATNNNNATC	3 cut(s)	471, 1077, 1479
BseMII	CTCAG	5 cut(s)	21, 167, 528, 838, 1761
BseNI	ACTGG	4 cut(s)	1013, 1202, 2094, 2198
BseRI	GAGGAG	4 cut(s)	96, 217, 589, 1122
BseSI	GKGCMC	1 cut(s)	2765
BseXI	GCAGC	5 cut(s)	907, 979, 1698, 2158, 2822
BsgI	GTGCAG	2 cut(s)	824, 2655
Bsh1236I	CGCG	3 cut(s)	1083, 2292, 2758
Bsh1285I	CGRYCG	1 cut(s)	2771
BshFI	GGCC	7 cut(s)	597, 690, 1423, 1667, 1798, 2197, 2668
BshTI	ACCGGT	1 cut(s)	2479
BshVI	ATCGAT	1 cut(s)	978
BsiEI	CGRYCG	1 cut(s)	2771
BsiHKAI	GWGCWC	3 cut(s)	2233, 2765, 2824
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	9 cut(s)	122, 140, 199, 324, 584, 598, 2480, 2840, 2867
BslFI	GGGAC	5 cut(s)	837, 1368, 1442, 2333, 2705
BsmBI	CGTCTC	2 cut(s)	313, 2895
BsmFI	GGGAC	5 cut(s)	837, 1368, 1442, 2333, 2705
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	7 cut(s)	597, 690, 1423, 1667, 1798, 2197, 2668
Bso31I	GGTCTC	2 cut(s)	244, 2779
BsoBI	CYCGRG	1 cut(s)	569
Bsp119I	TTCGAA	2 cut(s)	2365, 2440
Bsp1286I	GDGCHC	3 cut(s)	2233, 2765, 2824
Bsp1407I	TGTACA	1 cut(s)	2497
Bsp19I	CCATGG	1 cut(s)	1556
BspANI	GGCC	7 cut(s)	597, 690, 1423, 1667, 1798, 2197, 2668
BspCNI	CTCAG	5 cut(s)	22, 166, 529, 837, 1760
BspDI	ATCGAT	1 cut(s)	978
BspFNI	CGCG	3 cut(s)	1083, 2292, 2758
BspLI	GGNNCC	2 cut(s)	2321, 2838
BspPI	GGATC	4 cut(s)	1261, 1475, 2276, 2869
BspT104I	TTCGAA	2 cut(s)	2365, 2440
BspTI	CTTAAG	2 cut(s)	1562, 1922
BspTNI	GGTCTC	2 cut(s)	244, 2779
BsrFI	RCCGGY	2 cut(s)	323, 2479
BsrGI	TGTACA	1 cut(s)	2497
BsrI	ACTGG	4 cut(s)	1013, 1202, 2094, 2198
BssAI	RCCGGY	2 cut(s)	323, 2479
BssECI	CCNNGG	4 cut(s)	211, 462, 1424, 1556
BssNI	GRCGYC	1 cut(s)	2067
BssSI	CACGAG	2 cut(s)	1571, 1707
BssT1I	CCWWGG	2 cut(s)	462, 1556
Bst2BI	CACGAG	2 cut(s)	1571, 1707
Bst2UI	CCWGG	3 cut(s)	396, 2580, 2834
Bst6I	CTCTTC	3 cut(s)	1014, 2145, 2939
BstACI	GRCGYC	1 cut(s)	2067
BstAFI	CTTAAG	2 cut(s)	1562, 1922
BstAUI	TGTACA	1 cut(s)	2497
BstBI	TTCGAA	2 cut(s)	2365, 2440
BstC8I	GCNNGC	5 cut(s)	1318, 1339, 1881, 2666, 2670
BstDEI	CTNAG	8 cut(s)	30, 40, 153, 537, 754, 824, 1103, 1747
BstDSI	CCRYGG	2 cut(s)	211, 1556
BstF5I	GGATG	4 cut(s)	1054, 1653, 2437, 2608
BstFNI	CGCG	3 cut(s)	1083, 2292, 2758
BstHHI	GCGC	2 cut(s)	2123, 2758
BstMCI	CGRYCG	1 cut(s)	2771
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 533, 992, 2180, 2359, 2798, 2807, 2819
BstNI	CCWGG	3 cut(s)	396, 2580, 2834
BstNSI	RCATGY	4 cut(s)	1341, 1416, 1829, 1982
BstSCI	CCNGG	4 cut(s)	394, 2578, 2832, 2866
BstSFI	CTRYAG	3 cut(s)	2077, 2586, 2778
BstSLI	GKGCMC	1 cut(s)	2765
BstUI	CGCG	3 cut(s)	1083, 2292, 2758
BstV1I	GCAGC	5 cut(s)	907, 979, 1698, 2158, 2822
BstX2I	RGATCY	3 cut(s)	863, 1480, 2281
BstXI	CCANNNNNNTGG	1 cut(s)	1557
BstYI	RGATCY	3 cut(s)	863, 1480, 2281
Bsu15I	ATCGAT	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	2026
BsuRI	GGCC	7 cut(s)	597, 690, 1423, 1667, 1798, 2197, 2668
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	211, 1556
BtgZI	GCGATG	1 cut(s)	2439
BtrI	CACGTC	1 cut(s)	2128
BtsCI	GGATG	4 cut(s)	1054, 1653, 2437, 2608
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	5 cut(s)	612, 655, 1020, 1619, 2087
Cac8I	GCNNGC	5 cut(s)	1318, 1339, 1881, 2666, 2670
CaiI	CAGNNNCTG	2 cut(s)	2005, 2585
CfoI	GCGC	2 cut(s)	2123, 2758
Cfr10I	RCCGGY	2 cut(s)	323, 2479
Cfr13I	GGNCC	4 cut(s)	689, 1665, 1797, 2320
ClaI	ATCGAT	1 cut(s)	978
CseI	GACGC	3 cut(s)	1072, 2075, 2495
CsiI	ACCWGGT	1 cut(s)	2578
Csp6I	GTAC	7 cut(s)	821, 1218, 1363, 2295, 2498, 2553, 2583
CspAI	ACCGGT	1 cut(s)	2479
CviQI	GTAC	7 cut(s)	821, 1218, 1363, 2295, 2498, 2553, 2583
DdeI	CTNAG	8 cut(s)	30, 40, 153, 537, 754, 824, 1103, 1747
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	3 cut(s)	1014, 2145, 2939
EarI	CTCTTC	3 cut(s)	1014, 2145, 2939
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	462, 1556
Eco147I	AGGCCT	1 cut(s)	2668
Eco31I	GGTCTC	2 cut(s)	244, 2779
Eco32I	GATATC	1 cut(s)	1956
Eco47I	GGWCC	1 cut(s)	2320
Eco57I	CTGAAG	3 cut(s)	519, 972, 2220
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	2320
EcoRI	GAATTC	1 cut(s)	2618
EcoRII	CCWGG	3 cut(s)	394, 2578, 2832
EcoRV	GATATC	1 cut(s)	1956
EcoT14I	CCWWGG	2 cut(s)	462, 1556
EcoT22I	ATGCAT	2 cut(s)	425, 750
ErhI	CCWWGG	2 cut(s)	462, 1556
Esp3I	CGTCTC	2 cut(s)	313, 2895
FalI	AAGNNNNNCTT	2 cut(s)	1037, 1069
FaqI	GGGAC	5 cut(s)	837, 1368, 1442, 2333, 2705
FauI	CCCGC	4 cut(s)	1156, 1608, 2209, 2638
FauNDI	CATATG	2 cut(s)	1471, 1486
FbaI	TGATCA	4 cut(s)	229, 1474, 1638, 2313
FblI	GTMKAC	1 cut(s)	2064
Fnu4HI	GCNGC	5 cut(s)	896, 993, 1687, 2172, 2811
FokI	GGATG	4 cut(s)	1061, 1660, 2444, 2595
Fsp4HI	GCNGC	5 cut(s)	896, 993, 1687, 2172, 2811
FspBI	CTAG	3 cut(s)	255, 767, 2060
GlaI	GCGC	2 cut(s)	2122, 2757
GluI	GCNGC	5 cut(s)	896, 993, 1687, 2172, 2811
GsuI	CTGGAG	2 cut(s)	639, 2772
HaeIII	GGCC	7 cut(s)	597, 690, 1423, 1667, 1798, 2197, 2668
HapII	CCGG	9 cut(s)	122, 140, 199, 324, 584, 598, 2480, 2840, 2867
HgaI	GACGC	3 cut(s)	1072, 2075, 2495
HhaI	GCGC	2 cut(s)	2123, 2758
Hin1I	GRCGYC	1 cut(s)	2067
Hin6I	GCGC	2 cut(s)	2121, 2756
HinP1I	GCGC	2 cut(s)	2121, 2756
HincII	GTYRAC	3 cut(s)	520, 1675, 2593
HindII	GTYRAC	3 cut(s)	520, 1675, 2593
HindIII	AAGCTT	1 cut(s)	162
HpaI	GTTAAC	2 cut(s)	520, 1675
HpaII	CCGG	9 cut(s)	122, 140, 199, 324, 584, 598, 2480, 2840, 2867
Hpy166II	GTNNAC	9 cut(s)	272, 520, 776, 1365, 1675, 1907, 2065, 2593, 2763
Hpy8I	GTNNAC	9 cut(s)	272, 520, 776, 1365, 1675, 1907, 2065, 2593, 2763
Hpy99I	CGWCG	2 cut(s)	148, 317
HpyCH4IV	ACGT	5 cut(s)	1701, 2031, 2127, 2824, 2904
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 533, 992, 2180, 2359, 2798, 2807, 2819
HpyF3I	CTNAG	8 cut(s)	30, 40, 153, 537, 754, 824, 1103, 1747
HpySE526I	ACGT	5 cut(s)	1701, 2031, 2127, 2824, 2904
Hsp92I	GRCGYC	1 cut(s)	2067
HspAI	GCGC	2 cut(s)	2121, 2756
Ksp22I	TGATCA	4 cut(s)	229, 1474, 1638, 2313
KspAI	GTTAAC	2 cut(s)	520, 1675
LmnI	GCTCC	2 cut(s)	391, 1558
Lsp1109I	GCAGC	5 cut(s)	907, 979, 1698, 2158, 2822
LweI	GCATC	4 cut(s)	342, 757, 2422, 2462
MabI	ACCWGGT	1 cut(s)	2578
MaeI	CTAG	3 cut(s)	255, 767, 2060
MaeII	ACGT	5 cut(s)	1701, 2031, 2127, 2824, 2904
MboII	GAAGA	8 cut(s)	159, 231, 680, 873, 1001, 1538, 2162, 2956
MflI	RGATCY	3 cut(s)	863, 1480, 2281
MhlI	GDGCHC	3 cut(s)	2233, 2765, 2824
MluCI	AATT	9 cut(s)	489, 531, 1344, 2367, 2402, 2436, 2467, 2618, 2701
MlyI	GAGTC	7 cut(s)	28, 166, 569, 894, 926, 2125, 2162
MmeI	TCCRAC	7 cut(s)	838, 1050, 1279, 1483, 2409, 2636, 2878
Mph1103I	ATGCAT	2 cut(s)	425, 750
MroXI	GAANNNNTTC	2 cut(s)	644, 2702
MslI	CAYNNNNRTG	2 cut(s)	1841, 2679
MspA1I	CMGCKG	1 cut(s)	992
MspCI	CTTAAG	2 cut(s)	1562, 1922
MspI	CCGG	9 cut(s)	122, 140, 199, 324, 584, 598, 2480, 2840, 2867
MspR9I	CCNGG	4 cut(s)	396, 2580, 2834, 2868
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	3 cut(s)	396, 2580, 2834
MvnI	CGCG	3 cut(s)	1083, 2292, 2758
MwoI	GCNNNNNNNGC	8 cut(s)	10, 533, 992, 2180, 2359, 2798, 2807, 2819
NciI	CCSGG	1 cut(s)	2868
NcoI	CCATGG	1 cut(s)	1556
NdeI	CATATG	2 cut(s)	1471, 1486
NlaIV	GGNNCC	2 cut(s)	2321, 2838
NmeAIII	GCCGAG	1 cut(s)	1449
NmuCI	GTSAC	6 cut(s)	124, 130, 2128, 2203, 2482, 2507
NsiI	ATGCAT	2 cut(s)	425, 750
NspI	RCATGY	4 cut(s)	1341, 1416, 1829, 1982
NspV	TTCGAA	2 cut(s)	2365, 2440
PaeI	GCATGC	1 cut(s)	1341
PceI	AGGCCT	1 cut(s)	2668
PciI	ACATGT	1 cut(s)	1978
PcsI	WCGNNNNNNNCGW	1 cut(s)	2462
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	2 cut(s)	644, 2702
PfeI	GAWTC	7 cut(s)	190, 343, 472, 808, 1073, 1260, 1929
PflMI	CCANNNNNTGG	1 cut(s)	395
PinAI	ACCGGT	1 cut(s)	2479
PkrI	GCNGC	5 cut(s)	897, 994, 1688, 2173, 2812
PleI	GAGTC	7 cut(s)	28, 165, 568, 894, 925, 2125, 2161
PpsI	GAGTC	7 cut(s)	28, 165, 568, 894, 925, 2125, 2161
PpuMI	RGGWCCY	1 cut(s)	2320
PscI	ACATGT	1 cut(s)	1978
Psp1406I	AACGTT	1 cut(s)	1701
Psp5II	RGGWCCY	1 cut(s)	2320
Psp6I	CCWGG	3 cut(s)	394, 2578, 2832
PspGI	CCWGG	3 cut(s)	394, 2578, 2832
PspN4I	GGNNCC	2 cut(s)	2321, 2838
PspPI	GGNCC	4 cut(s)	689, 1665, 1797, 2320
PspPPI	RGGWCCY	1 cut(s)	2320
PsrI	GAACNNNNNNTAC	2 cut(s)	1761, 1793
PstNI	CAGNNNCTG	2 cut(s)	2005, 2585
PsuI	RGATCY	3 cut(s)	863, 1480, 2281
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	7 cut(s)	822, 1219, 1364, 2296, 2499, 2554, 2584
RsaNI	GTAC	7 cut(s)	821, 1218, 1363, 2295, 2498, 2553, 2583
RseI	CAYNNNNRTG	2 cut(s)	1841, 2679
SatI	GCNGC	5 cut(s)	896, 993, 1687, 2172, 2811
Sau96I	GGNCC	4 cut(s)	689, 1665, 1797, 2320
ScaI	AGTACT	1 cut(s)	2554
SchI	GAGTC	7 cut(s)	28, 166, 569, 894, 926, 2125, 2162
ScrFI	CCNGG	4 cut(s)	396, 2580, 2834, 2868
SduI	GDGCHC	3 cut(s)	2233, 2765, 2824
SexAI	ACCWGGT	1 cut(s)	2578
SfaNI	GCATC	4 cut(s)	342, 757, 2422, 2462
SfcI	CTRYAG	3 cut(s)	2077, 2586, 2778
SfuI	TTCGAA	2 cut(s)	2365, 2440
SgrAI	CRCCGGYG	2 cut(s)	323, 2479
SinI	GGWCC	1 cut(s)	2320
SmiMI	CAYNNNNRTG	2 cut(s)	1841, 2679
SmlI	CTYRAG	4 cut(s)	1562, 1922, 2187, 2232
SmoI	CTYRAG	4 cut(s)	1562, 1922, 2187, 2232
SphI	GCATGC	1 cut(s)	1341
Sse9I	AATT	9 cut(s)	489, 531, 1344, 2367, 2402, 2436, 2467, 2618, 2701
SseBI	AGGCCT	1 cut(s)	2668
SspI	AATATT	1 cut(s)	1887
SspMI	CTAG	3 cut(s)	255, 767, 2060
StuI	AGGCCT	1 cut(s)	2668
StyD4I	CCNGG	4 cut(s)	394, 2578, 2832, 2866
StyI	CCWWGG	2 cut(s)	462, 1556
TaiI	ACGT	5 cut(s)	1704, 2034, 2130, 2827, 2907
TaqI	TCGA	9 cut(s)	978, 1002, 1058, 1350, 1809, 2365, 2440, 2622, 2818
TaqII	GACCGA	3 cut(s)	2574, 2757, 2761
TasI	AATT	9 cut(s)	489, 531, 1344, 2367, 2402, 2436, 2467, 2618, 2701
TatI	WGTACW	4 cut(s)	820, 1217, 2497, 2552
TfiI	GAWTC	7 cut(s)	190, 343, 472, 808, 1073, 1260, 1929
TscAI	CASTG	5 cut(s)	619, 655, 1020, 1619, 2094
TseFI	GTSAC	6 cut(s)	124, 130, 2128, 2203, 2482, 2507
TseI	GCWGC	5 cut(s)	895, 992, 1686, 2171, 2810
Tsp45I	GTSAC	6 cut(s)	124, 130, 2128, 2203, 2482, 2507
TspDTI	ATGAA	9 cut(s)	32, 681, 988, 1238, 1520, 1640, 1737, 1859, 2479
TspGWI	ACGGA	2 cut(s)	301, 2874
TspRI	CASTG	5 cut(s)	619, 655, 1020, 1619, 2094
Van91I	CCANNNNNTGG	1 cut(s)	395
Vha464I	CTTAAG	2 cut(s)	1562, 1922
VneI	GTGCAC	1 cut(s)	2761
VpaK11BI	GGWCC	1 cut(s)	2320
XapI	RAATTY	1 cut(s)	2618
XceI	RCATGY	4 cut(s)	1341, 1416, 1829, 1982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1253
XmiI	GTMKAC	1 cut(s)	2064
XmnI	GAANNNNTTC	2 cut(s)	644, 2702
XspI	CTAG	3 cut(s)	255, 767, 2060
ZrmI	AGTACT	1 cut(s)	2554
Zsp2I	ATGCAT	2 cut(s)	425, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.