Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003981

Physical Location & Seq

Genomic Coordinates Reverse (-)

34102018 .. 34109170

Gene Structure 7153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATGCGGGAACGGCGGTGGAGCTTGCGAAGCAGGGCTCGACGCTTCTGCTGCTGGACGTTCCTCAACACACCCTCATCGGCATCGATACTCACATGGTTTCTGTCGGCCCCGCGTTTAAAGGCATCAAGATGATCCCTCCCGGTCCTCATTTCCTCTACTATTCCTCTTCCACCAGAGACGAAAAGGATTTCTCACCTATTACTGCCTTTTTCGTTTGTTCCGCACCATCTGAGGTAATTGTACGCAAGTGGGATCAACAAGAGGAGAGATTAGTCAAACTACCACAAGAGGAGGAGGAAGAGAGGTATTGCCGAGCTGTTAGGAGTTGGGAGTTTGACAGACATCTCGGTCCTTATAATCTGAGCCAGTATGGAGATTGGAAACGATTGTCTAGTTACATTACAAAGAGCACCATCGAACGGCTCGAACCCATTGGAGGAGAAATTACTGTTGCTTCTGAATCTTCCCTGCACAAATTCACTCCTAAAACAGCCAAGGAGAATGCTCTAGATGAGCAGTTGAAGGCTAGTACATTCTCAACATCCAGTGACACGTCGAATGCTAGAGGATGCTACTACACATCAATTCCACATGTTATCAAACATAAAGGAATCGATGTCCAGCAGCTTACTTATTTGAATCTTGACAAGACACAATTATTACAAAGTGTACTACAAAAGGAATATAATGGTTCTGAGGACATGCTTCTTGGGGAGCTGCAATTTGCCTTCATTGCATTTTTGATGGGACAATCACTTGAAGCATTTCTGCAGTGGAAGTCTTTGGTCAATCTTTTATTTGGATGTACTGAAGCTCCTTTCCATACAAGGAGTTGGCTATTTGTAAAGTTCATTAAAGTCATCTACTATCAACTGAAACATGCGCTTAAGAAAGATTGCACAGATGCAAGTGGTGCATCAGCCTTGTTAGATGATTCATGGTTTTCTGCTGACAGCTTTTTGTATCATCTTTTTAAGGAATTCTTTTTACTGCTGCAAGATGCCTCAATTGTTGACGGAGATCTTCTGTCATGGACAAGGAAACTCAAGGCGTTGCTAGAAAGCAATTTTGGATGGCAATTCGAGCAGAACAGTGCAGTTGATGGGATACACTTTGAAGAGGATGATGAGTTTGCTCCTGTTGTTGTGATGTTGGATGACCCAAGTTCGACTGAAGTACCAAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010586 GO:0016070 GO:0019827 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0035019 GO:0035198 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0046483 GO:0048509 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0061980 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:0098727 GO:1901360 GO:1901363 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

397

Amino Acids

45.13

Weight (kDa)

5.11

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAR2_1st	PF20981	13 - 145	8.6e-45	AAR2 N-terminal domain
AAR2	PF05282	194 - 363	1.3e-42	AAR2 C-terminal repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43810 AT5G43810 AT5G43810 AT5G43810
fragaria_vesca	FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630
malus_domestica	MD13G1201400.v1.1 MD16G1201200.v1.1
prunus_persica	Prupe.1G022900_v2.0.a1 Prupe.1G022900_v2.0.a1
pyrus_communis	pycom13g17460 pycom16g16970
rosa_chinensis	RchiOBHm_Chr4g0388221 RchiOBHm_Chr4g0388231
rosa_laevigata	RLG00000010073
rosa_roxburghii	Rroxscaffold_5G00334710
rosa_rugosa	Rorug03G0316100 Rorug03G0316200 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316400
rosa_samantha	Rh4AG021700 Rh4BG015800 Rh4CG021900 Rh4DG016600
rosa_wichuraiana	Rw4G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AasI	GACNNNNNNGTC	1 cut(s)	351
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	8, 17, 114, 225
AclWI	GGATC	2 cut(s)	130, 264
AcsI	RAATTY	2 cut(s)	479, 983
AcuI	CTGAAG	1 cut(s)	834
AfaI	GTAC	5 cut(s)	246, 535, 675, 811, 1182
AfiI	CCNNNNNNNGG	2 cut(s)	423, 440
AflII	CTTAAG	1 cut(s)	890
AflIII	ACRYGT	2 cut(s)	555, 595
AgsI	TTSAA	4 cut(s)	526, 643, 764, 1121
AjiI	CACGTC	1 cut(s)	558
AjuI	GAANNNNNNNTTGG	2 cut(s)	1056, 1088
AluBI	AGCT	6 cut(s)	25, 320, 631, 721, 818, 960
AluI	AGCT	6 cut(s)	25, 320, 631, 721, 818, 960
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	130, 264
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	4 cut(s)	52, 628, 721, 997
ApoI	RAATTY	2 cut(s)	479, 983
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	889
AspS9I	GGNCC	3 cut(s)	110, 146, 353
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	146, 353
BaeI	ACNNNNGTAYC	1 cut(s)	1164
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	4 cut(s)	39, 640, 708, 984
BccI	CCATC	5 cut(s)	238, 425, 742, 1071, 1100
BceAI	ACGGC	2 cut(s)	30, 440
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciVI	GTATCC	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	5 cut(s)	396, 512, 531, 567, 1061
BfmI	CTRYAG	1 cut(s)	773
BfrI	CTTAAG	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	1104
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	4 cut(s)	53, 629, 722, 998
BlsI	GCNGC	4 cut(s)	54, 630, 723, 999
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	146, 353
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	3 cut(s)	110, 146, 353
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	6 cut(s)	93, 135, 563, 898, 929, 994
BpuEI	CTTGAG	1 cut(s)	1034
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	2 cut(s)	87, 618
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 440
Bse1I	ACTGG	2 cut(s)	370, 549
Bse3DI	GCAATG	1 cut(s)	735
BseCI	ATCGAT	2 cut(s)	87, 618
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	7 cut(s)	10, 545, 578, 812, 1082, 1132, 1165
BseLI	CCNNNNNNNGG	2 cut(s)	423, 440
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	225, 356, 690
BseNI	ACTGG	2 cut(s)	370, 549
BseRI	GAGGAG	4 cut(s)	281, 308, 311, 456
BseXI	GCAGC	4 cut(s)	39, 640, 708, 984
BsgI	GTGCAG	2 cut(s)	458, 1119
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	2 cut(s)	87, 618
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	2 cut(s)	423, 440
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	765
BsmI	GAATGC	2 cut(s)	511, 568
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	41, 416
Bsp143I	GATC	3 cut(s)	135, 256, 1024
BspACI	CCGC	4 cut(s)	8, 17, 114, 225
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	226, 357, 691
BspDI	ATCGAT	2 cut(s)	87, 618
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	2 cut(s)	130, 264
BspTI	CTTAAG	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	370, 549
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	135, 256, 1024
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	454, 1097
Bst6I	CTCTTC	3 cut(s)	175, 297, 1116
BstAFI	CTTAAG	1 cut(s)	890
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	234, 365, 699
BstF5I	GGATG	7 cut(s)	10, 545, 578, 812, 1082, 1132, 1165
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	3 cut(s)	138, 259, 1027
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	135, 256, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 31, 52, 737, 917, 1087
BstNSI	RCATGY	3 cut(s)	599, 709, 887
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	773
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	39, 640, 708, 984
BstX2I	RGATCY	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	1024
Bsu15I	ATCGAT	2 cut(s)	87, 618
BsuI	GTATCC	1 cut(s)	1104
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	2 cut(s)	87, 618
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	7 cut(s)	10, 545, 578, 812, 1082, 1132, 1165
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	556, 782, 1102
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	889
Cfr13I	GGNCC	3 cut(s)	110, 146, 353
ClaI	ATCGAT	2 cut(s)	87, 618
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	245, 534, 674, 810, 1181
CviAII	CATG	6 cut(s)	97, 596, 706, 884, 942, 1035
CviQI	GTAC	5 cut(s)	245, 534, 674, 810, 1181
DdeI	CTNAG	3 cut(s)	234, 365, 699
DpnI	GATC	3 cut(s)	137, 258, 1026
DpnII	GATC	3 cut(s)	135, 256, 1024
DraI	TTTAAA	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	351
DseDI	GACNNNNNNGTC	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	175, 297, 1116
EarI	CTCTTC	3 cut(s)	175, 297, 1116
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	146, 353
Eco57I	CTGAAG	1 cut(s)	834
EcoRI	GAATTC	1 cut(s)	983
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	6 cut(s)	100, 599, 709, 887, 945, 1038
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	6 cut(s)	96, 595, 705, 883, 941, 1034
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	53, 629, 722, 998
FokI	GGATG	7 cut(s)	17, 532, 585, 819, 1089, 1139, 1172
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	4 cut(s)	53, 629, 722, 998
FspBI	CTAG	5 cut(s)	396, 512, 531, 567, 1061
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	4 cut(s)	53, 629, 722, 998
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	6 cut(s)	100, 599, 709, 887, 945, 1038
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	5 cut(s)	464, 615, 643, 938, 1188
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	674, 1018
Hpy188I	TCNGA	4 cut(s)	235, 366, 463, 700
Hpy188III	TCNNGA	3 cut(s)	130, 512, 647
Hpy8I	GTNNAC	2 cut(s)	674, 1018
Hpy99I	CGWCG	2 cut(s)	46, 562
HpyAV	CCTTC	2 cut(s)	520, 742
HpyCH4III	ACNGT	2 cut(s)	454, 1097
HpyCH4IV	ACGT	2 cut(s)	60, 557
HpyCH4V	TGCA	9 cut(s)	475, 724, 740, 775, 903, 911, 920, 1000, 1100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 31, 52, 737, 917, 1087
HpyF3I	CTNAG	3 cut(s)	234, 365, 699
HpySE526I	ACGT	2 cut(s)	60, 557
Hsp92II	CATG	6 cut(s)	100, 599, 709, 887, 945, 1038
HspAI	GCGC	1 cut(s)	887
Kzo9I	GATC	3 cut(s)	135, 256, 1024
LmnI	GCTCC	4 cut(s)	22, 718, 823, 1144
LpnPI	CCDG	9 cut(s)	20, 41, 157, 190, 383, 485, 562, 638, 1155
Lsp1109I	GCAGC	4 cut(s)	39, 640, 708, 984
LweI	GCATC	6 cut(s)	93, 135, 563, 898, 929, 994
MaeI	CTAG	5 cut(s)	396, 512, 531, 567, 1061
MaeII	ACGT	2 cut(s)	60, 557
MaeIII	GTNAC	2 cut(s)	398, 551
MalI	GATC	3 cut(s)	137, 258, 1026
MboI	GATC	3 cut(s)	135, 256, 1024
MboII	GAAGA	5 cut(s)	162, 314, 459, 1019, 1133
MfeI	CAATTG	1 cut(s)	1011
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	2 cut(s)	41, 416
MmeI	TCCRAC	1 cut(s)	1137
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	4 cut(s)	120, 858, 891, 978
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	1011
Mva1269I	GAATGC	2 cut(s)	511, 568
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	6 cut(s)	14, 31, 52, 737, 917, 1087
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	135, 256, 1024
NlaIII	CATG	6 cut(s)	100, 599, 709, 887, 945, 1038
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	3 cut(s)	599, 709, 887
PciI	ACATGT	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PctI	GAATGC	2 cut(s)	511, 568
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	5 cut(s)	464, 615, 643, 938, 1188
PkrI	GCNGC	4 cut(s)	54, 630, 723, 999
PscI	ACATGT	1 cut(s)	595
PsiI	TTATAA	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	110, 146, 353
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	1024
RsaI	GTAC	5 cut(s)	246, 535, 675, 811, 1182
RsaNI	GTAC	5 cut(s)	245, 534, 674, 810, 1181
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	120, 858, 891, 978
SatI	GCNGC	4 cut(s)	53, 629, 722, 998
Sau3AI	GATC	3 cut(s)	135, 256, 1024
Sau96I	GGNCC	3 cut(s)	110, 146, 353
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	41, 416
SfaNI	GCATC	6 cut(s)	93, 135, 563, 898, 929, 994
SfcI	CTRYAG	1 cut(s)	773
SinI	GGWCC	2 cut(s)	146, 353
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	890, 1049
SmoI	CTYRAG	2 cut(s)	890, 1049
SsiI	CCGC	4 cut(s)	8, 17, 114, 225
SspMI	CTAG	5 cut(s)	396, 512, 531, 567, 1061
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	454, 1097
TaiI	ACGT	2 cut(s)	63, 560
TaqI	TCGA	8 cut(s)	41, 87, 420, 429, 560, 618, 1086, 1172
TaqII	GACCGA	1 cut(s)	341
TatI	WGTACW	3 cut(s)	533, 673, 809
TfiI	GAWTC	5 cut(s)	464, 615, 643, 938, 1188
Tru1I	TTAA	4 cut(s)	120, 858, 891, 978
Tru9I	TTAA	4 cut(s)	120, 858, 891, 978
TscAI	CASTG	3 cut(s)	556, 782, 1102
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	4 cut(s)	52, 628, 721, 997
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	724, 844, 930
TspGWI	ACGGA	1 cut(s)	1035
TspRI	CASTG	3 cut(s)	556, 782, 1102
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	2 cut(s)	146, 353
XapI	RAATTY	2 cut(s)	479, 983
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	3 cut(s)	599, 709, 887
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	5 cut(s)	396, 512, 531, 567, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.