Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003981

Physical Location & Seq

Genomic Coordinates Reverse (-)

34099090 .. 34101164

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0316100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTCGGAGGCTCCGTTCCTTTATTTCCCTCAATTCTTATCTTTGCAAAGTCCAAATGCAGCCTTCACTGCTGCTTCCAAGATTAGAATACCCATCTGATTCTGCTGCTCCCTGTGGGTTATCTCCAAGTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCGTAAATATTATGATCTTTTTGGCAATGGAAAACCTGGTGACAAGGATTTCAGGAAAGCCTGGAAGAAAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAAGGGGTCATCTGGAAGAAGAGATCCAAAAAGTTAAACAGCAGGCAAGGGAGCACTCTGACCTGATCGATGCCGATGATAGTGATGAGTTGACAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGATGATGATGATATTCCTACTGAAGCCTACCCAAATGAGAGCAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCACAGTATCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCAGAGGAGCTTTCCCCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGACATGGGGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCTGAGTTGAAGCTGAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACACAGTCTAGGAGGAGGAAAGCACAAAAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010586 GO:0016070 GO:0019827 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0035019 GO:0035198 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0046483 GO:0048509 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0061980 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:0098727 GO:1901360 GO:1901363 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

310

Amino Acids

35.77

Weight (kDa)

6.42

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43810 AT5G43810 AT5G43810 AT5G43810
fragaria_vesca	FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630
malus_domestica	MD13G1201400.v1.1 MD16G1201200.v1.1
prunus_persica	Prupe.1G022900_v2.0.a1 Prupe.1G022900_v2.0.a1
pyrus_communis	pycom13g17460 pycom16g16970
rosa_chinensis	RchiOBHm_Chr4g0388221 RchiOBHm_Chr4g0388231
rosa_laevigata	RLG00000010073
rosa_roxburghii	Rroxscaffold_5G00334710
rosa_rugosa	Rorug03G0316100 Rorug03G0316200 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316400
rosa_samantha	Rh4AG021700 Rh4BG015800 Rh4CG021900 Rh4DG016600
rosa_wichuraiana	Rw4G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	831
AccII	CGCG	1 cut(s)	811
AclWI	GGATC	2 cut(s)	316, 815
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	492
AfeI	AGCGCT	1 cut(s)	929
AgsI	TTSAA	7 cut(s)	137, 521, 637, 646, 722, 796, 850
AhlI	ACTAGT	1 cut(s)	871
AjnI	CCWGG	4 cut(s)	199, 224, 595, 608
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	5 cut(s)	140, 514, 589, 754, 853
AluI	AGCT	5 cut(s)	140, 514, 589, 754, 853
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	429, 751
AlwI	GGATC	2 cut(s)	316, 815
Aor51HI	AGCGCT	1 cut(s)	929
AoxI	GGCC	2 cut(s)	653, 767
ApeKI	GCWGC	3 cut(s)	61, 73, 107
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	3 cut(s)	811, 813, 930
AspS9I	GGNCC	3 cut(s)	653, 737, 767
AsuHPI	GGTGA	3 cut(s)	173, 215, 458
AvaII	GGWCC	1 cut(s)	737
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	252, 902
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	60, 73, 94
BccI	CCATC	2 cut(s)	103, 281
BciT130I	CCWGG	4 cut(s)	201, 226, 597, 610
BcoDI	GTCTC	2 cut(s)	429, 751
BcuI	ACTAGT	1 cut(s)	871
BfaI	CTAG	3 cut(s)	698, 872, 906
BfoI	RGCGCY	1 cut(s)	931
BisI	GCNGC	3 cut(s)	62, 74, 108
BlsI	GCNGC	3 cut(s)	63, 75, 109
Bme1390I	CCNGG	4 cut(s)	201, 226, 597, 610
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	3 cut(s)	653, 737, 767
BmiI	GGNNCC	2 cut(s)	14, 768
BmrFI	CCNGG	4 cut(s)	201, 226, 597, 610
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	252, 902
Bsa29I	ATCGAT	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	4 cut(s)	201, 226, 597, 610
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	595
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	567, 746, 834
BseNI	ACTGG	1 cut(s)	439
BsePI	GCGCGC	1 cut(s)	809
BseRI	GAGGAG	3 cut(s)	431, 599, 925
BseXI	GCAGC	3 cut(s)	60, 73, 94
Bsh1236I	CGCG	1 cut(s)	811
BshFI	GGCC	2 cut(s)	655, 769
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	429, 751
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	655, 769
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
BspANI	GGCC	2 cut(s)	655, 769
BspCNI	CTCAG	3 cut(s)	566, 747, 835
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	14, 768
BspPI	GGATC	2 cut(s)	316, 815
BspQI	GCTCTTC	1 cut(s)	857
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	595
BssHII	GCGCGC	1 cut(s)	809
BssMI	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	4 cut(s)	201, 226, 597, 610
Bst4CI	ACNGT	2 cut(s)	540, 903
Bst6I	CTCTTC	2 cut(s)	312, 857
BstC8I	GCNNGC	3 cut(s)	342, 606, 811
BstDEI	CTNAG	4 cut(s)	553, 755, 771, 843
BstFNI	CGCG	1 cut(s)	811
BstH2I	RGCGCY	1 cut(s)	931
BstHHI	GCGC	3 cut(s)	811, 813, 930
BstKTI	GATC	6 cut(s)	149, 166, 181, 324, 366, 823
BstMAI	GTCTC	2 cut(s)	429, 751
BstMBI	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	4 cut(s)	201, 226, 597, 610
BstSCI	CCNGG	4 cut(s)	199, 224, 595, 608
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	3 cut(s)	60, 73, 94
BstV2I	GAAGAC	2 cut(s)	252, 902
BstX2I	RGATCY	2 cut(s)	321, 820
BstYI	RGATCY	2 cut(s)	321, 820
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	655, 769
BsuTUI	ATCGAT	1 cut(s)	366
BtsI	GCAGTG	2 cut(s)	68, 499
BtsIMutI	CAGTG	2 cut(s)	68, 499
Cac8I	GCNNGC	3 cut(s)	342, 606, 811
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	3 cut(s)	811, 813, 930
Cfr13I	GGNCC	3 cut(s)	653, 737, 767
ClaI	ATCGAT	1 cut(s)	366
CsiI	ACCWGGT	1 cut(s)	199
CviAII	CATG	3 cut(s)	688, 761, 814
DdeI	CTNAG	4 cut(s)	553, 755, 771, 843
DpnI	GATC	6 cut(s)	148, 165, 180, 323, 365, 822
DpnII	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
Eam1104I	CTCTTC	2 cut(s)	312, 857
EarI	CTCTTC	2 cut(s)	312, 857
Eco47I	GGWCC	1 cut(s)	737
Eco47III	AGCGCT	1 cut(s)	929
Eco57I	CTGAAG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRII	CCWGG	4 cut(s)	199, 224, 595, 608
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	3 cut(s)	691, 764, 817
FatI	CATG	3 cut(s)	687, 760, 813
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	62, 74, 108
Fsp4HI	GCNGC	3 cut(s)	62, 74, 108
FspBI	CTAG	3 cut(s)	698, 872, 906
GlaI	GCGC	3 cut(s)	810, 812, 929
GluI	GCNGC	3 cut(s)	62, 74, 108
HaeII	RGCGCY	1 cut(s)	931
HaeIII	GGCC	2 cut(s)	655, 769
HhaI	GCGC	3 cut(s)	811, 813, 930
Hin1II	CATG	3 cut(s)	691, 764, 817
Hin6I	GCGC	3 cut(s)	809, 811, 928
HinP1I	GCGC	3 cut(s)	809, 811, 928
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	3 cut(s)	173, 215, 458
Hpy166II	GTNNAC	2 cut(s)	390, 432
Hpy188I	TCNGA	6 cut(s)	9, 100, 358, 546, 556, 879
Hpy188III	TCNNGA	6 cut(s)	144, 217, 311, 405, 688, 735
Hpy8I	GTNNAC	2 cut(s)	390, 432
HpyAV	CCTTC	2 cut(s)	75, 437
HpyCH4III	ACNGT	2 cut(s)	540, 903
HpyCH4V	TGCA	6 cut(s)	48, 61, 620, 632, 749, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	4 cut(s)	553, 755, 771, 843
Hsp92II	CATG	3 cut(s)	691, 764, 817
HspAI	GCGC	3 cut(s)	809, 811, 928
Kzo9I	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
LguI	GCTCTTC	1 cut(s)	857
LmnI	GCTCC	5 cut(s)	18, 115, 349, 586, 713
Lsp1109I	GCAGC	3 cut(s)	60, 73, 94
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	3 cut(s)	698, 872, 906
MaeIII	GTNAC	3 cut(s)	203, 494, 692
MalI	GATC	6 cut(s)	148, 165, 180, 323, 365, 822
MboI	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
MboII	GAAGA	9 cut(s)	241, 257, 284, 326, 329, 658, 784, 874, 907
MflI	RGATCY	2 cut(s)	321, 820
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	7 cut(s)	34, 237, 521, 557, 615, 776, 826
MnlI	CCTC	7 cut(s)	3, 41, 409, 520, 577, 903, 906
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	5 cut(s)	240, 333, 563, 672, 779
MspR9I	CCNGG	4 cut(s)	201, 226, 597, 610
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	4 cut(s)	201, 226, 597, 610
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
NlaIII	CATG	3 cut(s)	691, 764, 817
NlaIV	GGNNCC	2 cut(s)	14, 768
NmuCI	GTSAC	3 cut(s)	203, 494, 692
NsiI	ATGCAT	1 cut(s)	634
PagI	TCATGA	1 cut(s)	687
PauI	GCGCGC	1 cut(s)	809
PciSI	GCTCTTC	1 cut(s)	857
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 163
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	901
PkrI	GCNGC	3 cut(s)	63, 75, 109
PsiI	TTATAA	1 cut(s)	831
Psp6I	CCWGG	4 cut(s)	199, 224, 595, 608
PspGI	CCWGG	4 cut(s)	199, 224, 595, 608
PspN4I	GGNNCC	2 cut(s)	14, 768
PspPI	GGNCC	3 cut(s)	653, 737, 767
PsuI	RGATCY	2 cut(s)	321, 820
PsyI	GACNNNGTC	1 cut(s)	901
PteI	GCGCGC	1 cut(s)	809
SapI	GCTCTTC	1 cut(s)	857
SaqAI	TTAA	5 cut(s)	240, 333, 563, 672, 779
SatI	GCNGC	3 cut(s)	62, 74, 108
Sau3AI	GATC	6 cut(s)	146, 163, 178, 321, 363, 820
Sau96I	GGNCC	3 cut(s)	653, 737, 767
ScrFI	CCNGG	4 cut(s)	201, 226, 597, 610
SduI	GDGCHC	1 cut(s)	354
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	871
Sse9I	AATT	7 cut(s)	34, 237, 521, 557, 615, 776, 826
SspI	AATATT	1 cut(s)	173
SspMI	CTAG	3 cut(s)	698, 872, 906
StyD4I	CCNGG	4 cut(s)	199, 224, 595, 608
TaaI	ACNGT	2 cut(s)	540, 903
TaqI	TCGA	1 cut(s)	366
TasI	AATT	7 cut(s)	34, 237, 521, 557, 615, 776, 826
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	5 cut(s)	240, 333, 563, 672, 779
Tru9I	TTAA	5 cut(s)	240, 333, 563, 672, 779
TscAI	CASTG	2 cut(s)	75, 499
TseFI	GTSAC	3 cut(s)	203, 494, 692
TseI	GCWGC	3 cut(s)	61, 73, 107
Tsp45I	GTSAC	3 cut(s)	203, 494, 692
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	75, 499
Tth111I	GACNNNGTC	1 cut(s)	901
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	521
XspI	CTAG	3 cut(s)	698, 872, 906
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.