Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003981

Physical Location & Seq

Genomic Coordinates Reverse (-)

2557071 .. 2563362

Gene Structure 6292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGCCTATCAGGAAAATGAAGGAGAGCTCAGAGCAACACCTTGTGATCAAAACCCATTTACAGAACACAGCAAACCCAGTTCAGAAGGCACCCAAGACAGGCCAAAATGGCAAAGGTCCACCAACCCCAGAACCTCAAAACCCCAAAACTCAGAACCAAACTTCACCTCCAACGAAGAACAGAGGAAGGAGAAGAGGGAGAGGTGGTCGGAAGTCTGATCAAGGTGATGTTTTTATGCGGCCAAGTTCAAGGCACTGCACGGTGGCTCATATTCCAGCCTCACCAAACTTGGCTGGAGGAGGTGCTTTAGTTAGTAGTACTACAAATGAGTCCTTGGAAAATGGTGGAAATTCGTGTGCCATGGAGATGGGTTTTCCCACTTCCAGTAAGTCATTGAGCTTTGCACCTAGGCCTGGCTATGGACAAGCTGGGATAAAGTGTGTTGTAAAGGCCAACCATTTCTTCGCAGAGTTACCAGACAAGGACTTGAACCATTATGATGTTTGCATTACCCCCGAAGTTACATCGAGAGTTGTGAACAGAGCTATCATGGCTGAACTGGTGAGATTGTACAGAGAATCTGACCTAGGAATGAGACTGCCCGCTTATGATGGTAGAAAGAGTCTGTATACTGCTGGTGAGCTACCCTTTGTTTGGAAGGAGTTTAACATCAAACTTACTGATGAAGAAGAACGAATCGATGGCCGAAAAAGAGAAAGGGAATATAAAGTGGTGATTAAATTTGTTGCTCGAGCGAACATGTATCATTTGAGCCAGTTTCTAGCCGGTAAATGTGCTGATGCTCCCCAGGAGGCCCTCCAAATTCTTGACATTGTTTTAAGAGAGCTCTCATCAAAAAGGTACTGCCCCATCGGGAGATCCTTCTTTTCACCTAATATCCGAACACCACAACGGCTTGGTGAGGGGTTGGAGTCATGGTGTGGGTTTTACCAAAGTATAAGGCCTACCCAAATGGGTCTTTCCCTCAATATTGCCTCTTCCTGTAATAGAGTTTGTAGCCAGCTTCTGGGAAAAGATGTATTATCTAGGACATTGTCTGATGCTGACCGTGTAAAGATTAAGAAGGCTCTTAGAGGGGTGAAAGTTGAAGTTACCCACAGAGGGAGTGTTCGAAGAAAGTATCGAGTATCGGGACTGACATCTCAACCTACAAGAGAGCTTGTGTTTCCTGTTGATGAGAACTCGACGATGAAGTCAGTAATTGAATACTTCCAGGAGATGTATGGATTCACAATTCAACATGGACATCTTCCTTGCCTTCAAGTTGGCGGAAATCAGAAGAAGGCTAATTATTTACCCATGGAGGCCTGCAAAATTGTTGAGGGGCAACGATATACAAAAAGGTTGAATGAAAAACAAATTACTGCTCTCTTAAAAGTTACATGTCAAAGGCCTAGGGATCGTGAAAATGACATCCTCCAGACCGTTCAACAGAATGCTTATGACCAAGACCCTTATGCTAATGAGTTTGGGATCAAAATCAGTGAAAAGCTCGCTTCAGTTGAGGCTCGAATTCTTCCAGCCCCTTGGCTGAAATATCATGAAACAGGAAAAGAAAAGAATTGTTTGCCTCAAGTAGGTCAGTGGAATATGATGAACAAGAAAATGATCAATGGAATGACAGTTAGCCGGTGGGCTTGTATTAACTTCTCACGGAGTGTGCAGGAGAGTGTTGCTCGTGGGTTTTGTAGTGAACTTGGTCAGATGTGTCAAGTCTCTGGCATGGAATTTAATCCAGAACCTGTAATTCCAATCTACAATGCCAGGCCTGAGCAAGTAGAGAAAGCTTTGAAACATGTATATCATGCATCCATGAACAAAACAAAAGGAAAAGAATTAGAGCTCTTATTGGCTATTTTACCTGACAACAACGGGTCCCTGTATGGTGATATCAAGCGAATATGTGAAACAGATCTTGGATTAATCTCGCAATGCTGTCTTACAAAGCATGTTTTCAAGATTAGCAAACAGTATTTGGCTAATGTGTCTCTTAAGATAAATGTTAAGATGGGTGGCAGAAACACTGTTCTTTTGGATGCTATTAGCTGCAGGATACCTTTAGTCAGTGATATACCAACCATAATTTTCGGAGCAGACGTGACTCACCCGGAGAATGGAGAAGATACCAGTCCCTCGATTGCTGCGGTAGTGGCTTCCCAGGATTGGCCAGAAGTGACCAAATATGCTGGGTTAGTTTGTGCTCAAGCTCACAGACAGGAACTGATACAAGATTTGTACAAGACATGGCAGGACCCTGTTCGTGGCACAGTCAGTGGCGGTATGATCCGGGATCTTCTGGTTTCCTTTAGGAAAGCAACAGGGCAGAAGCCTCTCAGGATCATATTTTACAGGGATGGCGTAAGTGAAGGGCAATTTTATCAGGTCTTACTTTATGAGCTTGATGCGATTAGGAAGGCGTGTGCTTCTCTGGAACCCAACTATCAACCGCCGGTGACTTTCATTGTAGTACAGAAGCGGCACCACACACGATTATTTGCTAATAACCATAGGGACAGAAGCAGTGTAGACAAGAGTGGCAACATATTGCCTGGCACTGTAGTTGATACCAAGATTTGCCATCCTACAGAATTTGATTTCTATCTCTGCAGCCATGCTGGTATTCAGGGGACAAGTCGGCCAGCTCACTACCATGTTCTCTGGGATGAGAATAATTTTACCCCTGATGGAATCCAGTCGTTGACAAACAATCTTTGCTACACATATGCAAGGTGCACGCGCTCTGTGTCTGTTGTACCTCCGGCGTATTATGCACATTTGGCTGCTTTTCGTGCCCGATTCTATATGGAGCCAGATCTGCAGGATAATAGCTCTATTGGTCATGCTGCTAAGGGCACACGGGCTGCAGGAGAGTCTGGTGTCCGGCCGTTGCCAGCTTTAAAGGAGAATGTGAAGAGAGTAATGTTTTATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010586 GO:0016070 GO:0019827 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0035019 GO:0035198 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0046483 GO:0048509 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0061980 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:0098727 GO:1901360 GO:1901363 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

984

Amino Acids

110.35

Weight (kDa)

9.29

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	146 - 280	1.7e-34	N-terminal domain of argonaute
ArgoL1	PF08699	290 - 331	2.2e-14	Argonaute linker 1 domain
PAZ	PF02170	359 - 464	3.6e-28	PAZ domain
ArgoL2	PF16488	474 - 520	9.9e-17	Argonaute linker 2 domain
ArgoMid	PF16487	531 - 608	1.7e-14	Mid domain of argonaute
Piwi	PF02171	623 - 942	1.6e-116	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43810 AT5G43810 AT5G43810 AT5G43810
fragaria_vesca	FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630
malus_domestica	MD13G1201400.v1.1 MD16G1201200.v1.1
prunus_persica	Prupe.1G022900_v2.0.a1 Prupe.1G022900_v2.0.a1
pyrus_communis	pycom13g17460 pycom16g16970
rosa_chinensis	RchiOBHm_Chr4g0388221 RchiOBHm_Chr4g0388231
rosa_laevigata	RLG00000010073
rosa_roxburghii	Rroxscaffold_5G00334710
rosa_rugosa	Rorug03G0316100 Rorug03G0316200 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316400
rosa_samantha	Rh4AG021700 Rh4BG015800 Rh4CG021900 Rh4DG016600
rosa_wichuraiana	Rw4G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1213
AccB1I	GGYRCC	2 cut(s)	88, 2499
AccB7I	CCANNNNNTGG	1 cut(s)	1027
AccI	GTMKAC	2 cut(s)	629, 2547
AccII	CGCG	1 cut(s)	2758
AciI	CCGC	7 cut(s)	238, 603, 1290, 2165, 2298, 2468, 2497
AclWI	GGATC	6 cut(s)	873, 1428, 1502, 2299, 2319, 2366
AcoI	YGGCCR	5 cut(s)	239, 703, 2186, 2657, 2903
AcsI	RAATTY	6 cut(s)	349, 740, 822, 1533, 1748, 2609
AcuI	CTGAAG	1 cut(s)	1503
AdeI	CACNNNGTG	2 cut(s)	43, 1679
AfaI	GTAC	6 cut(s)	319, 572, 863, 2258, 2490, 2775
AflII	CTTAAG	1 cut(s)	2012
AflIII	ACRYGT	3 cut(s)	759, 1403, 1816
AjiI	CACGTC	1 cut(s)	2119
AjnI	CCWGG	6 cut(s)	412, 807, 1233, 1784, 2178, 2569
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 1920, 1952
Alw21I	GWGCWC	5 cut(s)	29, 849, 1866, 2224, 2756
Alw26I	GTCTC	3 cut(s)	589, 1741, 2013
Alw44I	GTGCAC	1 cut(s)	2752
AlwI	GGATC	6 cut(s)	873, 1428, 1502, 2299, 2319, 2366
AlwNI	CAGNNNCTG	3 cut(s)	1027, 1763, 2242
Ama87I	CYCGRG	1 cut(s)	750
ApaLI	GTGCAC	1 cut(s)	2752
ApeKI	GCWGC	6 cut(s)	2067, 2162, 2628, 2801, 2864, 2882
ApoI	RAATTY	6 cut(s)	349, 740, 822, 1533, 1748, 2609
AseI	ATTAAT	1 cut(s)	1943
AspA2I	CCTAGG	3 cut(s)	407, 586, 1415
AspLEI	GCGC	1 cut(s)	2760
AspS9I	GGNCC	4 cut(s)	116, 814, 1896, 2272
AsuC2I	CCSGG	2 cut(s)	2129, 2309
AsuII	TTCGAA	1 cut(s)	1132
AvaI	CYCGRG	1 cut(s)	750
AvaII	GGWCC	3 cut(s)	116, 1896, 2272
AvrII	CCTAGG	3 cut(s)	407, 586, 1415
BaeGI	GKGCMC	3 cut(s)	2756, 2815, 2876
BalI	TGGCCA	1 cut(s)	2188
BanI	GGYRCC	2 cut(s)	88, 2499
BanII	GRGCYC	3 cut(s)	29, 849, 1866
BauI	CACGAG	1 cut(s)	1698
Bbv12I	GWGCWC	5 cut(s)	29, 849, 1866, 2224, 2756
BbvI	GCAGC	6 cut(s)	2054, 2149, 2640, 2788, 2851, 2869
BccI	CCATC	8 cut(s)	361, 605, 695, 878, 2023, 2369, 2607, 2699
BceAI	ACGGC	2 cut(s)	929, 2890
BciT130I	CCWGG	6 cut(s)	414, 809, 1235, 1786, 2180, 2571
BciVI	GTATCC	1 cut(s)	2067
BclI	TGATCA	3 cut(s)	45, 217, 1629
BcnI	CCSGG	2 cut(s)	2129, 2309
BcoDI	GTCTC	3 cut(s)	589, 1741, 2013
BfaI	CTAG	5 cut(s)	408, 587, 782, 1047, 1416
BfmI	CTRYAG	6 cut(s)	2068, 2577, 2604, 2626, 2837, 2883
BfrI	CTTAAG	1 cut(s)	2012
BfuI	GTATCC	1 cut(s)	2067
BglI	GCCNNNNNGGC	1 cut(s)	108
BglII	AGATCT	2 cut(s)	1933, 2833
BisI	GCNGC	8 cut(s)	239, 2068, 2163, 2498, 2629, 2802, 2865, 2883
BlnI	CCTAGG	3 cut(s)	407, 586, 1415
BlsI	GCNGC	8 cut(s)	240, 2069, 2164, 2499, 2630, 2803, 2866, 2884
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	8 cut(s)	414, 809, 1235, 1786, 2129, 2180, 2309, 2571
Bme18I	GGWCC	3 cut(s)	116, 1896, 2272
BmeT110I	CYCGRG	1 cut(s)	750
BmgBI	CACGTC	1 cut(s)	2119
BmgT120I	GGNCC	4 cut(s)	116, 814, 1896, 2272
BmiI	GGNNCC	7 cut(s)	90, 1897, 1898, 2274, 2454, 2501, 2829
BmrFI	CCNGG	8 cut(s)	414, 809, 1235, 1786, 2129, 2180, 2309, 2571
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	5 cut(s)	790, 1051, 1838, 2047, 2413
BmuI	ACTGGG	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	1681, 1713
BpmI	CTGGAG	2 cut(s)	315, 1424
Bpu10I	CCTNAGC	2 cut(s)	1791, 2868
Bpu14I	TTCGAA	1 cut(s)	1132
BpuEI	CTTGAG	2 cut(s)	1578, 2208
BpuMI	CCSGG	2 cut(s)	2129, 2309
Bsa29I	ATCGAT	1 cut(s)	699
BsaBI	GATNNNNATC	2 cut(s)	1499, 2619
BsaJI	CCNNGG	9 cut(s)	333, 360, 407, 586, 807, 1320, 1415, 1547, 2178
BsaXI	ACNNNNNCTCC	8 cut(s)	151, 181, 190, 220, 923, 953, 2103, 2133
Bse118I	RCCGGY	3 cut(s)	785, 1650, 2470
Bse1I	ACTGG	6 cut(s)	77, 384, 564, 775, 2148, 2713
Bse3DI	GCAATG	1 cut(s)	1958
Bse8I	GATNNNNATC	2 cut(s)	1499, 2619
BseBI	CCWGG	6 cut(s)	414, 809, 1235, 1786, 2180, 2571
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	9 cut(s)	333, 360, 407, 586, 807, 1320, 1415, 1547, 2178
BseGI	GGATG	6 cut(s)	1434, 1829, 2062, 2380, 2599, 2689
BseJI	GATNNNNATC	2 cut(s)	1499, 2619
BseMI	GCAATG	1 cut(s)	1958
BseMII	CTCAG	4 cut(s)	42, 164, 1782, 2368
BseNI	ACTGG	6 cut(s)	77, 384, 564, 775, 2148, 2713
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	3 cut(s)	2756, 2815, 2876
BseX3I	CGGCCG	1 cut(s)	2903
BseXI	GCAGC	6 cut(s)	2054, 2149, 2640, 2788, 2851, 2869
BseYI	CCCAGC	2 cut(s)	428, 2207
BsgI	GTGCAG	2 cut(s)	241, 1703
Bsh1236I	CGCG	1 cut(s)	2758
Bsh1285I	CGRYCG	1 cut(s)	2906
BshNI	GGYRCC	2 cut(s)	88, 2499
BshVI	ATCGAT	1 cut(s)	699
BsiEI	CGRYCG	1 cut(s)	2906
BsiHKAI	GWGCWC	5 cut(s)	29, 849, 1866, 2224, 2756
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	7 cut(s)	786, 1651, 2129, 2308, 2471, 2780, 2902
BslFI	GGGAC	5 cut(s)	1167, 1882, 2136, 2546, 2662
BsmAI	GTCTC	3 cut(s)	589, 1741, 2013
BsmFI	GGGAC	5 cut(s)	1167, 1882, 2136, 2546, 2662
BsmI	GAATGC	1 cut(s)	1462
BsoBI	CYCGRG	1 cut(s)	750
Bsp119I	TTCGAA	1 cut(s)	1132
Bsp1286I	GDGCHC	7 cut(s)	29, 849, 1866, 2224, 2756, 2815, 2876
Bsp1407I	TGTACA	2 cut(s)	570, 2256
Bsp19I	CCATGG	2 cut(s)	360, 1320
BspACI	CCGC	7 cut(s)	238, 603, 1290, 2165, 2298, 2468, 2497
BspCNI	CTCAG	4 cut(s)	41, 163, 1783, 2367
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	2758
BspHI	TCATGA	1 cut(s)	1561
BspLI	GGNNCC	7 cut(s)	90, 1897, 1898, 2274, 2454, 2501, 2829
BspMAI	CTGCAG	4 cut(s)	2072, 2630, 2841, 2887
BspPI	GGATC	6 cut(s)	873, 1428, 1502, 2299, 2319, 2366
BspT104I	TTCGAA	1 cut(s)	1132
BspT107I	GGYRCC	2 cut(s)	88, 2499
BspTI	CTTAAG	1 cut(s)	2012
BsrDI	GCAATG	1 cut(s)	1958
BsrFI	RCCGGY	3 cut(s)	785, 1650, 2470
BsrGI	TGTACA	2 cut(s)	570, 2256
BsrI	ACTGG	6 cut(s)	77, 384, 564, 775, 2148, 2713
BssAI	RCCGGY	3 cut(s)	785, 1650, 2470
BssECI	CCNNGG	9 cut(s)	333, 360, 407, 586, 807, 1320, 1415, 1547, 2178
BssNAI	GTATAC	1 cut(s)	630
BssSI	CACGAG	1 cut(s)	1698
BssT1I	CCWWGG	7 cut(s)	333, 360, 407, 586, 1320, 1415, 1547
Bst1107I	GTATAC	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	1698
Bst2UI	CCWGG	6 cut(s)	414, 809, 1235, 1786, 2180, 2571
Bst4CI	ACNGT	8 cut(s)	262, 1070, 1447, 1645, 1992, 2047, 2290, 2578
Bst6I	CTCTTC	3 cut(s)	187, 1003, 2927
BstAFI	CTTAAG	1 cut(s)	2012
BstAUI	TGTACA	2 cut(s)	570, 2256
BstBI	TTCGAA	1 cut(s)	1132
BstC8I	GCNNGC	7 cut(s)	603, 1022, 1330, 1515, 2661, 2756, 2913
BstDEI	CTNAG	6 cut(s)	28, 150, 1091, 1791, 2354, 2868
BstDSI	CCRYGG	2 cut(s)	360, 1320
BstENI	CCTNNNNNAGG	1 cut(s)	1596
BstF5I	GGATG	6 cut(s)	1434, 1829, 2062, 2380, 2599, 2689
BstFNI	CGCG	1 cut(s)	2758
BstHHI	GCGC	1 cut(s)	2760
BstMAI	GTCTC	3 cut(s)	589, 1741, 2013
BstMCI	CGRYCG	1 cut(s)	2906
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 551, 2171, 2789, 2798, 2810, 2836
BstNI	CCWGG	6 cut(s)	414, 809, 1235, 1786, 2180, 2571
BstNSI	RCATGY	4 cut(s)	763, 1407, 1820, 1973
BstSCI	CCNGG	8 cut(s)	412, 807, 1233, 1784, 2127, 2178, 2307, 2569
BstSFI	CTRYAG	6 cut(s)	2068, 2577, 2604, 2626, 2837, 2883
BstSLI	GKGCMC	3 cut(s)	2756, 2815, 2876
BstUI	CGCG	1 cut(s)	2758
BstV1I	GCAGC	6 cut(s)	2054, 2149, 2640, 2788, 2851, 2869
BstX2I	RGATCY	4 cut(s)	878, 1933, 2311, 2833
BstXI	CCANNNNNNTGG	2 cut(s)	367, 1548
BstYI	RGATCY	4 cut(s)	878, 1933, 2311, 2833
BstZ17I	GTATAC	1 cut(s)	630
BstZI	CGGCCG	1 cut(s)	2903
Bsu15I	ATCGAT	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	2067
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	2 cut(s)	360, 1320
BtrI	CACGTC	1 cut(s)	2119
BtsCI	GGATG	6 cut(s)	1434, 1829, 2062, 2380, 2599, 2689
BtsI	GCAGTG	2 cut(s)	253, 2548
BtsIMutI	CAGTG	8 cut(s)	253, 1510, 1610, 2043, 2092, 2299, 2548, 2574
Cac8I	GCNNGC	7 cut(s)	603, 1022, 1330, 1515, 2661, 2756, 2913
CaiI	CAGNNNCTG	3 cut(s)	1027, 1763, 2242
CciI	TCATGA	1 cut(s)	1561
CfoI	GCGC	1 cut(s)	2760
Cfr10I	RCCGGY	3 cut(s)	785, 1650, 2470
Cfr13I	GGNCC	4 cut(s)	116, 814, 1896, 2272
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	6 cut(s)	318, 571, 862, 2257, 2489, 2774
CviQI	GTAC	6 cut(s)	318, 571, 862, 2257, 2489, 2774
DdeI	CTNAG	6 cut(s)	28, 150, 1091, 1791, 2354, 2868
DraI	TTTAAA	1 cut(s)	2919
DraIII	CACNNNGTG	2 cut(s)	43, 1679
DrdI	GACNNNNNNGTC	1 cut(s)	1213
DseDI	GACNNNNNNGTC	1 cut(s)	1213
EaeI	YGGCCR	5 cut(s)	239, 703, 2186, 2657, 2903
EagI	CGGCCG	1 cut(s)	2903
Eam1104I	CTCTTC	3 cut(s)	187, 1003, 2927
EarI	CTCTTC	3 cut(s)	187, 1003, 2927
EciI	GGCGGA	1 cut(s)	1305
Ecl136II	GAGCTC	3 cut(s)	27, 847, 1864
EclXI	CGGCCG	1 cut(s)	2903
Eco130I	CCWWGG	7 cut(s)	333, 360, 407, 586, 1320, 1415, 1547
Eco147I	AGGCCT	5 cut(s)	412, 964, 1328, 1414, 1789
Eco24I	GRGCYC	3 cut(s)	29, 849, 1866
Eco32I	GATATC	1 cut(s)	1912
Eco47I	GGWCC	3 cut(s)	116, 1896, 2272
Eco52I	CGGCCG	1 cut(s)	2903
Eco53kI	GAGCTC	3 cut(s)	27, 847, 1864
Eco57I	CTGAAG	1 cut(s)	1503
Eco88I	CYCGRG	1 cut(s)	750
EcoICRI	GAGCTC	3 cut(s)	27, 847, 1864
EcoNI	CCTNNNNNAGG	1 cut(s)	1596
EcoO109I	RGGNCCY	3 cut(s)	814, 1896, 2272
EcoRI	GAATTC	1 cut(s)	1533
EcoRII	CCWGG	6 cut(s)	412, 807, 1233, 1784, 2178, 2569
EcoRV	GATATC	1 cut(s)	1912
EcoT14I	CCWWGG	7 cut(s)	333, 360, 407, 586, 1320, 1415, 1547
EcoT22I	ATGCAT	1 cut(s)	1831
EcoT38I	GRGCYC	3 cut(s)	29, 849, 1866
ErhI	CCWWGG	7 cut(s)	333, 360, 407, 586, 1320, 1415, 1547
FaqI	GGGAC	5 cut(s)	1167, 1882, 2136, 2546, 2662
FauI	CCCGC	1 cut(s)	610
FauNDI	CATATG	1 cut(s)	2743
FbaI	TGATCA	3 cut(s)	45, 217, 1629
FblI	GTMKAC	2 cut(s)	629, 2547
Fnu4HI	GCNGC	8 cut(s)	239, 2068, 2163, 2498, 2629, 2802, 2865, 2883
FokI	GGATG	6 cut(s)	1421, 1816, 2069, 2387, 2586, 2696
FriOI	GRGCYC	3 cut(s)	29, 849, 1866
Fsp4HI	GCNGC	8 cut(s)	239, 2068, 2163, 2498, 2629, 2802, 2865, 2883
FspBI	CTAG	5 cut(s)	408, 587, 782, 1047, 1416
GlaI	GCGC	1 cut(s)	2759
GluI	GCNGC	8 cut(s)	239, 2068, 2163, 2498, 2629, 2802, 2865, 2883
GsaI	CCCAGC	2 cut(s)	432, 2211
GsuI	CTGGAG	2 cut(s)	315, 1424
HapII	CCGG	7 cut(s)	786, 1651, 2129, 2308, 2471, 2780, 2902
HhaI	GCGC	1 cut(s)	2760
Hin6I	GCGC	1 cut(s)	2758
HinP1I	GCGC	1 cut(s)	2758
HincII	GTYRAC	1 cut(s)	2721
HindII	GTYRAC	1 cut(s)	2721
HindIII	AAGCTT	1 cut(s)	1806
HpaII	CCGG	7 cut(s)	786, 1651, 2129, 2308, 2471, 2780, 2902
Hpy166II	GTNNAC	7 cut(s)	119, 538, 630, 1715, 2548, 2721, 2754
Hpy8I	GTNNAC	7 cut(s)	119, 538, 630, 1715, 2548, 2721, 2754
Hpy99I	CGWCG	1 cut(s)	1210
HpyCH4III	ACNGT	8 cut(s)	262, 1070, 1447, 1645, 1992, 2047, 2290, 2578
HpyCH4IV	ACGT	1 cut(s)	2118
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 551, 2171, 2789, 2798, 2810, 2836
HpyF3I	CTNAG	6 cut(s)	28, 150, 1091, 1791, 2354, 2868
HpySE526I	ACGT	1 cut(s)	2118
HspAI	GCGC	1 cut(s)	2758
KflI	GGGWCCC	1 cut(s)	1896
Ksp22I	TGATCA	3 cut(s)	45, 217, 1629
LmnI	GCTCC	3 cut(s)	808, 2111, 2827
Lsp1109I	GCAGC	6 cut(s)	2054, 2149, 2640, 2788, 2851, 2869
LweI	GCATC	5 cut(s)	790, 1051, 1838, 2047, 2413
MaeI	CTAG	5 cut(s)	408, 587, 782, 1047, 1416
MaeII	ACGT	1 cut(s)	2118
MaeIII	GTNAC	7 cut(s)	471, 520, 1111, 1399, 2119, 2194, 2473
MflI	RGATCY	4 cut(s)	878, 1933, 2311, 2833
MhlI	GDGCHC	7 cut(s)	29, 849, 1866, 2224, 2756, 2815, 2876
MlsI	TGGCCA	1 cut(s)	2188
MluNI	TGGCCA	1 cut(s)	2188
MlyI	GAGTC	5 cut(s)	338, 631, 941, 2116, 2900
MmeI	TCCRAC	3 cut(s)	188, 194, 909
Mox20I	TGGCCA	1 cut(s)	2188
Mph1103I	ATGCAT	1 cut(s)	1831
MscI	TGGCCA	1 cut(s)	2188
MslI	CAYNNNNRTG	3 cut(s)	365, 498, 2670
Msp20I	TGGCCA	1 cut(s)	2188
MspCI	CTTAAG	1 cut(s)	2012
MspI	CCGG	7 cut(s)	786, 1651, 2129, 2308, 2471, 2780, 2902
MspR9I	CCNGG	8 cut(s)	414, 809, 1235, 1786, 2129, 2180, 2309, 2571
Mva1269I	GAATGC	1 cut(s)	1462
MvaI	CCWGG	6 cut(s)	414, 809, 1235, 1786, 2180, 2571
MvnI	CGCG	1 cut(s)	2758
MwoI	GCNNNNNNNGC	7 cut(s)	108, 551, 2171, 2789, 2798, 2810, 2836
NciI	CCSGG	2 cut(s)	2129, 2309
NcoI	CCATGG	2 cut(s)	360, 1320
NdeI	CATATG	1 cut(s)	2743
NlaIV	GGNNCC	7 cut(s)	90, 1897, 1898, 2274, 2454, 2501, 2829
NmuCI	GTSAC	3 cut(s)	2119, 2194, 2473
NsiI	ATGCAT	1 cut(s)	1831
NspI	RCATGY	4 cut(s)	763, 1407, 1820, 1973
NspV	TTCGAA	1 cut(s)	1132
PaeR7I	CTCGAG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	1561
PceI	AGGCCT	5 cut(s)	412, 964, 1328, 1414, 1789
PciI	ACATGT	3 cut(s)	759, 1403, 1816
PcsI	WCGNNNNNNNCGW	1 cut(s)	2115
PctI	GAATGC	1 cut(s)	1462
PfeI	GAWTC	5 cut(s)	578, 696, 1248, 2709, 2817
PflFI	GACNNNGTC	1 cut(s)	1054
PflMI	CCANNNNNTGG	1 cut(s)	1027
PfoI	TCCNGGA	2 cut(s)	1233, 2307
PkrI	GCNGC	8 cut(s)	240, 2069, 2164, 2499, 2630, 2803, 2866, 2884
PleI	GAGTC	5 cut(s)	337, 630, 940, 2116, 2899
PpsI	GAGTC	5 cut(s)	337, 630, 940, 2116, 2899
PpuMI	RGGWCCY	2 cut(s)	1896, 2272
PscI	ACATGT	3 cut(s)	759, 1403, 1816
PshBI	ATTAAT	1 cut(s)	1943
Psp124BI	GAGCTC	3 cut(s)	29, 849, 1866
Psp5II	RGGWCCY	2 cut(s)	1896, 2272
Psp6I	CCWGG	6 cut(s)	412, 807, 1233, 1784, 2178, 2569
PspFI	CCCAGC	2 cut(s)	428, 2207
PspGI	CCWGG	6 cut(s)	412, 807, 1233, 1784, 2178, 2569
PspN4I	GGNNCC	7 cut(s)	90, 1897, 1898, 2274, 2454, 2501, 2829
PspPI	GGNCC	4 cut(s)	116, 814, 1896, 2272
PspPPI	RGGWCCY	2 cut(s)	1896, 2272
PspXI	VCTCGAGB	1 cut(s)	750
PstI	CTGCAG	4 cut(s)	2072, 2630, 2841, 2887
PstNI	CAGNNNCTG	3 cut(s)	1027, 1763, 2242
PsuI	RGATCY	4 cut(s)	878, 1933, 2311, 2833
PsyI	GACNNNGTC	1 cut(s)	1054
RsaI	GTAC	6 cut(s)	319, 572, 863, 2258, 2490, 2775
RsaNI	GTAC	6 cut(s)	318, 571, 862, 2257, 2489, 2774
RseI	CAYNNNNRTG	3 cut(s)	365, 498, 2670
SacI	GAGCTC	3 cut(s)	29, 849, 1866
SatI	GCNGC	8 cut(s)	239, 2068, 2163, 2498, 2629, 2802, 2865, 2883
Sau96I	GGNCC	4 cut(s)	116, 814, 1896, 2272
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	5 cut(s)	338, 631, 941, 2116, 2900
ScrFI	CCNGG	8 cut(s)	414, 809, 1235, 1786, 2129, 2180, 2309, 2571
SduI	GDGCHC	7 cut(s)	29, 849, 1866, 2224, 2756, 2815, 2876
SfaNI	GCATC	5 cut(s)	790, 1051, 1838, 2047, 2413
SfcI	CTRYAG	6 cut(s)	2068, 2577, 2604, 2626, 2837, 2883
Sfr274I	CTCGAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	1132
SgrAI	CRCCGGYG	1 cut(s)	2470
SinI	GGWCC	3 cut(s)	116, 1896, 2272
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	3 cut(s)	365, 498, 2670
SmlI	CTYRAG	4 cut(s)	750, 1593, 2012, 2223
SmoI	CTYRAG	4 cut(s)	750, 1593, 2012, 2223
SseBI	AGGCCT	5 cut(s)	412, 964, 1328, 1414, 1789
SsiI	CCGC	7 cut(s)	238, 603, 1290, 2165, 2298, 2468, 2497
SspI	AATATT	1 cut(s)	991
SspMI	CTAG	5 cut(s)	408, 587, 782, 1047, 1416
SstI	GAGCTC	3 cut(s)	29, 849, 1866
StuI	AGGCCT	5 cut(s)	412, 964, 1328, 1414, 1789
StyD4I	CCNGG	8 cut(s)	412, 807, 1233, 1784, 2127, 2178, 2307, 2569
StyI	CCWWGG	7 cut(s)	333, 360, 407, 586, 1320, 1415, 1547
TaaI	ACNGT	8 cut(s)	262, 1070, 1447, 1645, 1992, 2047, 2290, 2578
TaiI	ACGT	1 cut(s)	2121
TaqI	TCGA	8 cut(s)	527, 699, 751, 1132, 1144, 1205, 1531, 2156
TatI	WGTACW	4 cut(s)	317, 570, 2256, 2488
TauI	GCSGC	2 cut(s)	241, 2500
TfiI	GAWTC	5 cut(s)	578, 696, 1248, 2709, 2817
TscAI	CASTG	8 cut(s)	260, 1510, 1610, 2050, 2092, 2299, 2548, 2581
TseFI	GTSAC	3 cut(s)	2119, 2194, 2473
TseI	GCWGC	6 cut(s)	2067, 2162, 2628, 2801, 2864, 2882
Tsp45I	GTSAC	3 cut(s)	2119, 2194, 2473
TspDTI	ATGAA	8 cut(s)	32, 699, 1226, 1386, 1578, 1631, 1850, 2470
TspGWI	ACGGA	1 cut(s)	1690
TspRI	CASTG	8 cut(s)	260, 1510, 1610, 2050, 2092, 2299, 2548, 2581
Tth111I	GACNNNGTC	1 cut(s)	1054
Van91I	CCANNNNNTGG	1 cut(s)	1027
Vha464I	CTTAAG	1 cut(s)	2012
VneI	GTGCAC	1 cut(s)	2752
VpaK11BI	GGWCC	3 cut(s)	116, 1896, 2272
VspI	ATTAAT	1 cut(s)	1943
XagI	CCTNNNNNAGG	1 cut(s)	1596
XapI	RAATTY	6 cut(s)	349, 740, 822, 1533, 1748, 2609
XceI	RCATGY	4 cut(s)	763, 1407, 1820, 1973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1241
XhoI	CTCGAG	1 cut(s)	750
XmaJI	CCTAGG	3 cut(s)	407, 586, 1415
XmiI	GTMKAC	2 cut(s)	629, 2547
XspI	CTAG	5 cut(s)	408, 587, 782, 1047, 1416
ZrmI	AGTACT	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	1831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.