Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003981

Physical Location & Seq

Genomic Coordinates Reverse (-)

4071804 .. 4080123

Gene Structure 8320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2982 bp

ATGCCTATCAGGAAAATGAAGGAGAGCTCAGAGCAACACCTTGTGATCAAAACCCATTTACAGAACACAGCAAACCCAGTTCAGAAGGCACCCAAGACAGGCCAAAATGGCAAAGGTCCACCAACCCCAGAACCTCAAAACCCCAAAACTCAGAACCAAACTTCACCTCCAACTAAGAACAGAGGAAGGAGAAGGGGGAGAGGTGGTCGGAAGTCTGATCAAGGTGATGTTTTTATGCGGCCAAGTTCAAGGCACTGCACGGTGGCTCATATTCCAGCCTCACCAAACTTGGCTGGAGGAGGTGCTTTAGTTAGTAGTACTTCAAATGAGTCCTTGGAAAATGGTGGAAATTCGTGTGCCATGGAGATGGGTTTTCCCACTTCCAGTAAGTCATTGAGCTTTGCACCTAGGCCTGGCTATGGACAAGCTGGGATAAAGTGTGTTGTAAAGGCCAACCATTTCTTCGCAGAGTTACCAGACAAGGACTTGAACCATTATGATGTTTGCATTACCCCCGAAGTTACATCGAGAGTTGTGAACAGAGCTATCATGGCCGAACTGGTGAGATTGTACAGAGAATCTGACCTAGGAATGAGACTGCCCGCTTATGATGGTAGAAAGAGTCTGTATACTGCTGGTGAGCTACCCTTTGTTTGGAAGGAGTTTAACATCAAACTTACTGATGAAGAAGAACGAATCGATGGCCGAAAAAGAGAAAGGGAATATAAAGTGGTGATTAAATTTGTTGCTCGAGCGAACATGTATCATTTGAGCCAGTTTCTAGCCGGTAAATGTGCTGATGCTCCCCAGGAGGCCCTCCAAATTCTTGACATTGTTTTAAGAGAGCTCTCATCAAAAAGGTACTGCCCCATCGGGAGATCCTTCTTTTCACCTAATATCCGAACACCACAACGGCTTGGTGAGGGGTTGGAGTCATGGTGTGGGTTTTACCAAAGTATAAGGCCTACCCAAATGGGTCTTTCCCTCAATATTGATATGGCTTCAGCTGCATTTATTGAGCCTCTTCCTGTAATAGAGTTTGTAGCCCAGCTTCTGGGAAAAGATGTATTATCTAGGACATTGTCTGATGCTGACCGTGTAAAGATTAAGAAGGCTCTTAGAGGGGTGAAAGTTGAAGTTACCCACAGAGGGAGTGTTCGAAGAAAGTATCGAGTATCGGGACTGACATCTCAACCTACAAGAGAGCTTGTGTTTCCTGTTGATGAGAACTCGACGATGAAGTCAGTAATTGAATACTTCCAGGAGATGTATGGATTCACAATTCAACATGGACATCTTCCTTGCCTTCAAGTTGGCGGAAATCAGAAGAAGGCGAATTATTTACCCATGGAGGCCTGCAAAATTGTTGAGGGGCAACGATATACAAAAAGGTTGAATGAAAAACAAATTACTGCTCTCTTAAAAGTTACATGTCAAAGGCCTAGGGATCGTGAAAATGACATCCTCCAGACCGTTCAACAGAATGCTTATGACCAAGACCCTTATGCTAATGAGTTTGGGATCAAAATCAGTGAAAAGCTCGCTTCAGTTGAGGCTCGAATTCTTCCAGCCCCTTGGCTGAAATATCATGAAACAGGAAAAGAAAAGAATTGTTTGCCTCAAGTAGGTCAGTGGAATATGATGAACAAGAAAATGATCAATGGAATGACAGTTAGCCGGTGGGCTTGTATTAACTTCTCACGGAGTGTGCAGGAGAGTGTTGCTCGTGGGTTTTGTAGTGAACTTGGTCAGATGTGTCAAGTCTCTGGCATGGAATTTAATCCAGAACCTGTAATTCCAATCTACAATGCCAGGCCTGAGCAAGTAGAGAAAGCTTTGAAACATGTATATCATGCATCCATGAACAAAACAAAAGGAAAAGAATTAGAGCTCTTATTGGCTATTTTACCTGACAACAACGGGTCCCTGTATGGTGATATCAAGCGAATATGTGAAACAGATCTTGGATTAATCTCGCAATGCTGTCTTACAAAGCATGTTTTCAAGATTAGCAAACAGTATTTGGCTAATGTGTCTCTTAAGATAAATGTTAAGATGGGTGGCAGAAACACTGTTCTTTTGGATGCTATTAGCTGCAGGATACCTTTAGTCAGTGATATACCAACCATAATTTTCGGAGCAGACGTGACTCACCCGGAGAATGGAGAAGATACCAGTCCCTCGATTGCTGCGGTAGTGGCTTCCCAGGATTGGCCAGAAGTGACCAAATATGCTGGGTTAGTTTGTGCTCAAGCTCACAGACAGGAACTGATACAAGATTTGTACAAGACATGGCAGGACCCTGTTCGTGGCACAGTCAGTGGCGGTATGATCCGGGATCTTCTGGTTTCCTTTAGGAAAGCAACAGGGCAGAAGCCTCTCAGGATCATATTTTACAGGGATGGCGTAAGTGAAGGGCAATTTTATCAGGTCTTACTTTATGAGCTTGATGCGATTAGGAAGGCATGTGCTTCTCTGGAACCCAACTATCAACCGCCGGTGACTTTCATTGTAGTACAGAAGCGGCACCACACACGATTATTTGCTAATAACCATAGGGACAGAAGCAGTGTAGACAAGAGTGGCAACATATTGCCTGGCACTGTAGTTGATACCAAGATTTGCCATCCTACAGAATTTGATTTCTATCTCTGCAGCCATGCTGGTATTCAGGGGACAAGTCGGCCAGCTCACTACCATGTTCTCTGGGATGAGAATAATTTTACCCCTGATGGAATCCAGTCGTTGACAAACAATCTTTGCTACACATATGCAAGGTGCACGCGCTCTGTGTCTGTTGTACCTCCGGCATATTATGCACATTTGGCTGCTTTTCGTGCCCGATTCTATATGGAGCCAGATCTGCAGGATAATAGCTCTATTGGTCATGCTGCTAAGGGCACACGGGCTGCAGGAGAGTCTGGTGTCCGGCCGTTGCCAGCTTTAAAGGAGAATGTGAAGAGAGTAATGTTTTATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010586 GO:0016070 GO:0019827 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0035019 GO:0035198 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0046483 GO:0048509 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0061980 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:0098727 GO:1901360 GO:1901363 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

993

Amino Acids

111.33

Weight (kDa)

9.23

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	146 - 280	1.7e-34	N-terminal domain of argonaute
ArgoL1	PF08699	290 - 340	5e-19	Argonaute linker 1 domain
PAZ	PF02170	364 - 473	2.5e-28	PAZ domain
ArgoL2	PF16488	483 - 529	1e-16	Argonaute linker 2 domain
ArgoMid	PF16487	540 - 617	1.7e-14	Mid domain of argonaute
Piwi	PF02171	632 - 951	1.6e-116	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43810 AT5G43810 AT5G43810 AT5G43810
fragaria_vesca	FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630
malus_domestica	MD13G1201400.v1.1 MD16G1201200.v1.1
prunus_persica	Prupe.1G022900_v2.0.a1 Prupe.1G022900_v2.0.a1
pyrus_communis	pycom13g17460 pycom16g16970
rosa_chinensis	RchiOBHm_Chr4g0388221 RchiOBHm_Chr4g0388231
rosa_laevigata	RLG00000010073
rosa_roxburghii	Rroxscaffold_5G00334710
rosa_rugosa	Rorug03G0316100 Rorug03G0316200 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316400
rosa_samantha	Rh4AG021700 Rh4BG015800 Rh4CG021900 Rh4DG016600
rosa_wichuraiana	Rw4G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1240
AccB1I	GGYRCC	2 cut(s)	88, 2526
AccB7I	CCANNNNNTGG	1 cut(s)	1054
AccI	GTMKAC	2 cut(s)	629, 2574
AccII	CGCG	1 cut(s)	2785
AciI	CCGC	7 cut(s)	238, 603, 1317, 2192, 2325, 2495, 2524
AclWI	GGATC	6 cut(s)	873, 1455, 1529, 2326, 2346, 2393
AcoI	YGGCCR	6 cut(s)	239, 552, 703, 2213, 2684, 2930
AcsI	RAATTY	6 cut(s)	349, 740, 822, 1560, 1775, 2636
AcuI	CTGAAG	2 cut(s)	987, 1530
AdeI	CACNNNGTG	2 cut(s)	43, 1706
AfaI	GTAC	6 cut(s)	319, 572, 863, 2285, 2517, 2802
AflII	CTTAAG	1 cut(s)	2039
AflIII	ACRYGT	3 cut(s)	759, 1430, 1843
AjiI	CACGTC	1 cut(s)	2146
AjnI	CCWGG	6 cut(s)	412, 807, 1260, 1811, 2205, 2596
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 1947, 1979
Alw21I	GWGCWC	5 cut(s)	29, 849, 1893, 2251, 2783
Alw26I	GTCTC	3 cut(s)	589, 1768, 2040
Alw44I	GTGCAC	1 cut(s)	2779
AlwI	GGATC	6 cut(s)	873, 1455, 1529, 2326, 2346, 2393
AlwNI	CAGNNNCTG	3 cut(s)	1054, 1790, 2269
Ama87I	CYCGRG	1 cut(s)	750
ApaLI	GTGCAC	1 cut(s)	2779
ApeKI	GCWGC	7 cut(s)	1007, 2094, 2189, 2655, 2828, 2891, 2909
ApoI	RAATTY	6 cut(s)	349, 740, 822, 1560, 1775, 2636
AseI	ATTAAT	1 cut(s)	1970
AspA2I	CCTAGG	3 cut(s)	407, 586, 1442
AspLEI	GCGC	1 cut(s)	2787
AspS9I	GGNCC	4 cut(s)	116, 814, 1923, 2299
AsuC2I	CCSGG	2 cut(s)	2156, 2336
AsuII	TTCGAA	1 cut(s)	1159
AvaI	CYCGRG	1 cut(s)	750
AvaII	GGWCC	3 cut(s)	116, 1923, 2299
AvrII	CCTAGG	3 cut(s)	407, 586, 1442
BaeGI	GKGCMC	3 cut(s)	2783, 2842, 2903
BalI	TGGCCA	1 cut(s)	2215
BanI	GGYRCC	2 cut(s)	88, 2526
BanII	GRGCYC	3 cut(s)	29, 849, 1893
BarI	GAAGNNNNNNTAC	2 cut(s)	1035, 1067
BauI	CACGAG	1 cut(s)	1725
Bbv12I	GWGCWC	5 cut(s)	29, 849, 1893, 2251, 2783
BbvI	GCAGC	7 cut(s)	994, 2081, 2176, 2667, 2815, 2878, 2896
BccI	CCATC	8 cut(s)	361, 605, 695, 878, 2050, 2396, 2634, 2726
BceAI	ACGGC	2 cut(s)	929, 2917
BciT130I	CCWGG	6 cut(s)	414, 809, 1262, 1813, 2207, 2598
BciVI	GTATCC	1 cut(s)	2094
BclI	TGATCA	3 cut(s)	45, 217, 1656
BcnI	CCSGG	2 cut(s)	2156, 2336
BcoDI	GTCTC	3 cut(s)	589, 1768, 2040
BfaI	CTAG	5 cut(s)	408, 587, 782, 1074, 1443
BfmI	CTRYAG	6 cut(s)	2095, 2604, 2631, 2653, 2864, 2910
BfrI	CTTAAG	1 cut(s)	2039
BfuI	GTATCC	1 cut(s)	2094
BglI	GCCNNNNNGGC	1 cut(s)	108
BglII	AGATCT	2 cut(s)	1960, 2860
BisI	GCNGC	9 cut(s)	239, 1008, 2095, 2190, 2525, 2656, 2829, 2892, 2910
BlnI	CCTAGG	3 cut(s)	407, 586, 1442
BlsI	GCNGC	9 cut(s)	240, 1009, 2096, 2191, 2526, 2657, 2830, 2893, 2911
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	8 cut(s)	414, 809, 1262, 1813, 2156, 2207, 2336, 2598
Bme18I	GGWCC	3 cut(s)	116, 1923, 2299
BmeT110I	CYCGRG	1 cut(s)	750
BmgBI	CACGTC	1 cut(s)	2146
BmgT120I	GGNCC	4 cut(s)	116, 814, 1923, 2299
BmiI	GGNNCC	7 cut(s)	90, 1924, 1925, 2301, 2481, 2528, 2856
BmrFI	CCNGG	8 cut(s)	414, 809, 1262, 1813, 2156, 2207, 2336, 2598
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	5 cut(s)	790, 1078, 1865, 2074, 2440
BmuI	ACTGGG	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	1708, 1740
BpmI	CTGGAG	2 cut(s)	315, 1451
Bpu10I	CCTNAGC	2 cut(s)	1818, 2895
Bpu14I	TTCGAA	1 cut(s)	1159
BpuEI	CTTGAG	2 cut(s)	1605, 2235
BpuMI	CCSGG	2 cut(s)	2156, 2336
Bsa29I	ATCGAT	1 cut(s)	699
BsaBI	GATNNNNATC	2 cut(s)	1526, 2646
BsaJI	CCNNGG	9 cut(s)	333, 360, 407, 586, 807, 1347, 1442, 1574, 2205
BsaXI	ACNNNNNCTCC	8 cut(s)	151, 181, 190, 220, 923, 953, 2130, 2160
Bse118I	RCCGGY	3 cut(s)	785, 1677, 2497
Bse1I	ACTGG	6 cut(s)	77, 384, 564, 775, 2175, 2740
Bse3DI	GCAATG	1 cut(s)	1985
Bse8I	GATNNNNATC	2 cut(s)	1526, 2646
BseBI	CCWGG	6 cut(s)	414, 809, 1262, 1813, 2207, 2598
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	9 cut(s)	333, 360, 407, 586, 807, 1347, 1442, 1574, 2205
BseGI	GGATG	6 cut(s)	1461, 1856, 2089, 2407, 2626, 2716
BseJI	GATNNNNATC	2 cut(s)	1526, 2646
BseMI	GCAATG	1 cut(s)	1985
BseMII	CTCAG	4 cut(s)	42, 164, 1809, 2395
BseNI	ACTGG	6 cut(s)	77, 384, 564, 775, 2175, 2740
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	3 cut(s)	2783, 2842, 2903
BseX3I	CGGCCG	1 cut(s)	2930
BseXI	GCAGC	7 cut(s)	994, 2081, 2176, 2667, 2815, 2878, 2896
BseYI	CCCAGC	3 cut(s)	428, 1047, 2234
BsgI	GTGCAG	2 cut(s)	241, 1730
Bsh1236I	CGCG	1 cut(s)	2785
Bsh1285I	CGRYCG	1 cut(s)	2933
BshNI	GGYRCC	2 cut(s)	88, 2526
BshVI	ATCGAT	1 cut(s)	699
BsiEI	CGRYCG	1 cut(s)	2933
BsiHKAI	GWGCWC	5 cut(s)	29, 849, 1893, 2251, 2783
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	7 cut(s)	786, 1678, 2156, 2335, 2498, 2807, 2929
BslFI	GGGAC	5 cut(s)	1194, 1909, 2163, 2573, 2689
BsmAI	GTCTC	3 cut(s)	589, 1768, 2040
BsmFI	GGGAC	5 cut(s)	1194, 1909, 2163, 2573, 2689
BsmI	GAATGC	1 cut(s)	1489
BsoBI	CYCGRG	1 cut(s)	750
Bsp119I	TTCGAA	1 cut(s)	1159
Bsp1286I	GDGCHC	7 cut(s)	29, 849, 1893, 2251, 2783, 2842, 2903
Bsp1407I	TGTACA	2 cut(s)	570, 2283
Bsp19I	CCATGG	2 cut(s)	360, 1347
BspACI	CCGC	7 cut(s)	238, 603, 1317, 2192, 2325, 2495, 2524
BspCNI	CTCAG	4 cut(s)	41, 163, 1810, 2394
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	2785
BspHI	TCATGA	1 cut(s)	1588
BspLI	GGNNCC	7 cut(s)	90, 1924, 1925, 2301, 2481, 2528, 2856
BspMAI	CTGCAG	4 cut(s)	2099, 2657, 2868, 2914
BspPI	GGATC	6 cut(s)	873, 1455, 1529, 2326, 2346, 2393
BspT104I	TTCGAA	1 cut(s)	1159
BspT107I	GGYRCC	2 cut(s)	88, 2526
BspTI	CTTAAG	1 cut(s)	2039
BsrDI	GCAATG	1 cut(s)	1985
BsrFI	RCCGGY	3 cut(s)	785, 1677, 2497
BsrGI	TGTACA	2 cut(s)	570, 2283
BsrI	ACTGG	6 cut(s)	77, 384, 564, 775, 2175, 2740
BssAI	RCCGGY	3 cut(s)	785, 1677, 2497
BssECI	CCNNGG	9 cut(s)	333, 360, 407, 586, 807, 1347, 1442, 1574, 2205
BssNAI	GTATAC	1 cut(s)	630
BssSI	CACGAG	1 cut(s)	1725
BssT1I	CCWWGG	7 cut(s)	333, 360, 407, 586, 1347, 1442, 1574
Bst1107I	GTATAC	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	1725
Bst2UI	CCWGG	6 cut(s)	414, 809, 1262, 1813, 2207, 2598
Bst4CI	ACNGT	8 cut(s)	262, 1097, 1474, 1672, 2019, 2074, 2317, 2605
Bst6I	CTCTTC	2 cut(s)	1029, 2954
BstAFI	CTTAAG	1 cut(s)	2039
BstAPI	GCANNNNNTGC	1 cut(s)	2816
BstAUI	TGTACA	2 cut(s)	570, 2283
BstBI	TTCGAA	1 cut(s)	1159
BstC8I	GCNNGC	6 cut(s)	603, 1357, 1542, 2688, 2783, 2940
BstDEI	CTNAG	7 cut(s)	28, 150, 174, 1118, 1818, 2381, 2895
BstDSI	CCRYGG	2 cut(s)	360, 1347
BstENI	CCTNNNNNAGG	1 cut(s)	1623
BstF5I	GGATG	6 cut(s)	1461, 1856, 2089, 2407, 2626, 2716
BstFNI	CGCG	1 cut(s)	2785
BstHHI	GCGC	1 cut(s)	2787
BstMAI	GTCTC	3 cut(s)	589, 1768, 2040
BstMCI	CGRYCG	1 cut(s)	2933
BstMWI	GCNNNNNNNGC	8 cut(s)	108, 551, 1007, 2198, 2816, 2825, 2837, 2863
BstNI	CCWGG	6 cut(s)	414, 809, 1262, 1813, 2207, 2598
BstNSI	RCATGY	5 cut(s)	763, 1434, 1847, 2000, 2469
BstSCI	CCNGG	8 cut(s)	412, 807, 1260, 1811, 2154, 2205, 2334, 2596
BstSFI	CTRYAG	6 cut(s)	2095, 2604, 2631, 2653, 2864, 2910
BstSLI	GKGCMC	3 cut(s)	2783, 2842, 2903
BstUI	CGCG	1 cut(s)	2785
BstV1I	GCAGC	7 cut(s)	994, 2081, 2176, 2667, 2815, 2878, 2896
BstX2I	RGATCY	4 cut(s)	878, 1960, 2338, 2860
BstXI	CCANNNNNNTGG	2 cut(s)	367, 1575
BstYI	RGATCY	4 cut(s)	878, 1960, 2338, 2860
BstZ17I	GTATAC	1 cut(s)	630
BstZI	CGGCCG	1 cut(s)	2930
Bsu15I	ATCGAT	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	2094
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	2 cut(s)	360, 1347
BtrI	CACGTC	1 cut(s)	2146
BtsCI	GGATG	6 cut(s)	1461, 1856, 2089, 2407, 2626, 2716
BtsI	GCAGTG	2 cut(s)	253, 2575
BtsIMutI	CAGTG	8 cut(s)	253, 1537, 1637, 2070, 2119, 2326, 2575, 2601
Cac8I	GCNNGC	6 cut(s)	603, 1357, 1542, 2688, 2783, 2940
CaiI	CAGNNNCTG	3 cut(s)	1054, 1790, 2269
CciI	TCATGA	1 cut(s)	1588
CfoI	GCGC	1 cut(s)	2787
Cfr10I	RCCGGY	3 cut(s)	785, 1677, 2497
Cfr13I	GGNCC	4 cut(s)	116, 814, 1923, 2299
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	6 cut(s)	318, 571, 862, 2284, 2516, 2801
CviQI	GTAC	6 cut(s)	318, 571, 862, 2284, 2516, 2801
DdeI	CTNAG	7 cut(s)	28, 150, 174, 1118, 1818, 2381, 2895
DraI	TTTAAA	1 cut(s)	2946
DraIII	CACNNNGTG	2 cut(s)	43, 1706
DrdI	GACNNNNNNGTC	1 cut(s)	1240
DseDI	GACNNNNNNGTC	1 cut(s)	1240
EaeI	YGGCCR	6 cut(s)	239, 552, 703, 2213, 2684, 2930
EagI	CGGCCG	1 cut(s)	2930
Eam1104I	CTCTTC	2 cut(s)	1029, 2954
EarI	CTCTTC	2 cut(s)	1029, 2954
EciI	GGCGGA	1 cut(s)	1332
Ecl136II	GAGCTC	3 cut(s)	27, 847, 1891
EclXI	CGGCCG	1 cut(s)	2930
Eco130I	CCWWGG	7 cut(s)	333, 360, 407, 586, 1347, 1442, 1574
Eco147I	AGGCCT	5 cut(s)	412, 964, 1355, 1441, 1816
Eco24I	GRGCYC	3 cut(s)	29, 849, 1893
Eco32I	GATATC	1 cut(s)	1939
Eco47I	GGWCC	3 cut(s)	116, 1923, 2299
Eco52I	CGGCCG	1 cut(s)	2930
Eco53kI	GAGCTC	3 cut(s)	27, 847, 1891
Eco57I	CTGAAG	2 cut(s)	987, 1530
Eco88I	CYCGRG	1 cut(s)	750
EcoICRI	GAGCTC	3 cut(s)	27, 847, 1891
EcoNI	CCTNNNNNAGG	1 cut(s)	1623
EcoO109I	RGGNCCY	3 cut(s)	814, 1923, 2299
EcoRI	GAATTC	1 cut(s)	1560
EcoRII	CCWGG	6 cut(s)	412, 807, 1260, 1811, 2205, 2596
EcoRV	GATATC	1 cut(s)	1939
EcoT14I	CCWWGG	7 cut(s)	333, 360, 407, 586, 1347, 1442, 1574
EcoT22I	ATGCAT	1 cut(s)	1858
EcoT38I	GRGCYC	3 cut(s)	29, 849, 1893
ErhI	CCWWGG	7 cut(s)	333, 360, 407, 586, 1347, 1442, 1574
FaqI	GGGAC	5 cut(s)	1194, 1909, 2163, 2573, 2689
FauI	CCCGC	1 cut(s)	610
FauNDI	CATATG	1 cut(s)	2770
FbaI	TGATCA	3 cut(s)	45, 217, 1656
FblI	GTMKAC	2 cut(s)	629, 2574
Fnu4HI	GCNGC	9 cut(s)	239, 1008, 2095, 2190, 2525, 2656, 2829, 2892, 2910
FokI	GGATG	6 cut(s)	1448, 1843, 2096, 2414, 2613, 2723
FriOI	GRGCYC	3 cut(s)	29, 849, 1893
Fsp4HI	GCNGC	9 cut(s)	239, 1008, 2095, 2190, 2525, 2656, 2829, 2892, 2910
FspBI	CTAG	5 cut(s)	408, 587, 782, 1074, 1443
GlaI	GCGC	1 cut(s)	2786
GluI	GCNGC	9 cut(s)	239, 1008, 2095, 2190, 2525, 2656, 2829, 2892, 2910
GsaI	CCCAGC	3 cut(s)	432, 1051, 2238
GsuI	CTGGAG	2 cut(s)	315, 1451
HapII	CCGG	7 cut(s)	786, 1678, 2156, 2335, 2498, 2807, 2929
HhaI	GCGC	1 cut(s)	2787
Hin6I	GCGC	1 cut(s)	2785
HinP1I	GCGC	1 cut(s)	2785
HincII	GTYRAC	1 cut(s)	2748
HindII	GTYRAC	1 cut(s)	2748
HindIII	AAGCTT	1 cut(s)	1833
HpaII	CCGG	7 cut(s)	786, 1678, 2156, 2335, 2498, 2807, 2929
Hpy166II	GTNNAC	7 cut(s)	119, 538, 630, 1742, 2575, 2748, 2781
Hpy8I	GTNNAC	7 cut(s)	119, 538, 630, 1742, 2575, 2748, 2781
Hpy99I	CGWCG	1 cut(s)	1237
HpyCH4III	ACNGT	8 cut(s)	262, 1097, 1474, 1672, 2019, 2074, 2317, 2605
HpyCH4IV	ACGT	1 cut(s)	2145
HpyF10VI	GCNNNNNNNGC	8 cut(s)	108, 551, 1007, 2198, 2816, 2825, 2837, 2863
HpyF3I	CTNAG	7 cut(s)	28, 150, 174, 1118, 1818, 2381, 2895
HpySE526I	ACGT	1 cut(s)	2145
HspAI	GCGC	1 cut(s)	2785
KflI	GGGWCCC	1 cut(s)	1923
Ksp22I	TGATCA	3 cut(s)	45, 217, 1656
LmnI	GCTCC	3 cut(s)	808, 2138, 2854
Lsp1109I	GCAGC	7 cut(s)	994, 2081, 2176, 2667, 2815, 2878, 2896
LweI	GCATC	5 cut(s)	790, 1078, 1865, 2074, 2440
MaeI	CTAG	5 cut(s)	408, 587, 782, 1074, 1443
MaeII	ACGT	1 cut(s)	2145
MaeIII	GTNAC	7 cut(s)	471, 520, 1138, 1426, 2146, 2221, 2500
MflI	RGATCY	4 cut(s)	878, 1960, 2338, 2860
MhlI	GDGCHC	7 cut(s)	29, 849, 1893, 2251, 2783, 2842, 2903
MlsI	TGGCCA	1 cut(s)	2215
MluNI	TGGCCA	1 cut(s)	2215
MlyI	GAGTC	5 cut(s)	338, 631, 941, 2143, 2927
MmeI	TCCRAC	3 cut(s)	188, 194, 909
Mox20I	TGGCCA	1 cut(s)	2215
Mph1103I	ATGCAT	1 cut(s)	1858
MscI	TGGCCA	1 cut(s)	2215
MslI	CAYNNNNRTG	3 cut(s)	365, 498, 2697
Msp20I	TGGCCA	1 cut(s)	2215
MspA1I	CMGCKG	1 cut(s)	1007
MspCI	CTTAAG	1 cut(s)	2039
MspI	CCGG	7 cut(s)	786, 1678, 2156, 2335, 2498, 2807, 2929
MspR9I	CCNGG	8 cut(s)	414, 809, 1262, 1813, 2156, 2207, 2336, 2598
Mva1269I	GAATGC	1 cut(s)	1489
MvaI	CCWGG	6 cut(s)	414, 809, 1262, 1813, 2207, 2598
MvnI	CGCG	1 cut(s)	2785
MwoI	GCNNNNNNNGC	8 cut(s)	108, 551, 1007, 2198, 2816, 2825, 2837, 2863
NciI	CCSGG	2 cut(s)	2156, 2336
NcoI	CCATGG	2 cut(s)	360, 1347
NdeI	CATATG	1 cut(s)	2770
NlaIV	GGNNCC	7 cut(s)	90, 1924, 1925, 2301, 2481, 2528, 2856
NmuCI	GTSAC	3 cut(s)	2146, 2221, 2500
NsiI	ATGCAT	1 cut(s)	1858
NspI	RCATGY	5 cut(s)	763, 1434, 1847, 2000, 2469
NspV	TTCGAA	1 cut(s)	1159
PaeR7I	CTCGAG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	1588
PceI	AGGCCT	5 cut(s)	412, 964, 1355, 1441, 1816
PciI	ACATGT	3 cut(s)	759, 1430, 1843
PcsI	WCGNNNNNNNCGW	1 cut(s)	2142
PctI	GAATGC	1 cut(s)	1489
PfeI	GAWTC	5 cut(s)	578, 696, 1275, 2736, 2844
PflFI	GACNNNGTC	1 cut(s)	1081
PflMI	CCANNNNNTGG	1 cut(s)	1054
PfoI	TCCNGGA	2 cut(s)	1260, 2334
PkrI	GCNGC	9 cut(s)	240, 1009, 2096, 2191, 2526, 2657, 2830, 2893, 2911
PleI	GAGTC	5 cut(s)	337, 630, 940, 2143, 2926
PpsI	GAGTC	5 cut(s)	337, 630, 940, 2143, 2926
PpuMI	RGGWCCY	2 cut(s)	1923, 2299
PscI	ACATGT	3 cut(s)	759, 1430, 1843
PshBI	ATTAAT	1 cut(s)	1970
Psp124BI	GAGCTC	3 cut(s)	29, 849, 1893
Psp5II	RGGWCCY	2 cut(s)	1923, 2299
Psp6I	CCWGG	6 cut(s)	412, 807, 1260, 1811, 2205, 2596
PspFI	CCCAGC	3 cut(s)	428, 1047, 2234
PspGI	CCWGG	6 cut(s)	412, 807, 1260, 1811, 2205, 2596
PspN4I	GGNNCC	7 cut(s)	90, 1924, 1925, 2301, 2481, 2528, 2856
PspPI	GGNCC	4 cut(s)	116, 814, 1923, 2299
PspPPI	RGGWCCY	2 cut(s)	1923, 2299
PspXI	VCTCGAGB	1 cut(s)	750
PstI	CTGCAG	4 cut(s)	2099, 2657, 2868, 2914
PstNI	CAGNNNCTG	3 cut(s)	1054, 1790, 2269
PsuI	RGATCY	4 cut(s)	878, 1960, 2338, 2860
PsyI	GACNNNGTC	1 cut(s)	1081
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	6 cut(s)	319, 572, 863, 2285, 2517, 2802
RsaNI	GTAC	6 cut(s)	318, 571, 862, 2284, 2516, 2801
RseI	CAYNNNNRTG	3 cut(s)	365, 498, 2697
SacI	GAGCTC	3 cut(s)	29, 849, 1893
SatI	GCNGC	9 cut(s)	239, 1008, 2095, 2190, 2525, 2656, 2829, 2892, 2910
Sau96I	GGNCC	4 cut(s)	116, 814, 1923, 2299
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	5 cut(s)	338, 631, 941, 2143, 2927
ScrFI	CCNGG	8 cut(s)	414, 809, 1262, 1813, 2156, 2207, 2336, 2598
SduI	GDGCHC	7 cut(s)	29, 849, 1893, 2251, 2783, 2842, 2903
SfaNI	GCATC	5 cut(s)	790, 1078, 1865, 2074, 2440
SfcI	CTRYAG	6 cut(s)	2095, 2604, 2631, 2653, 2864, 2910
Sfr274I	CTCGAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	1159
SgrAI	CRCCGGYG	1 cut(s)	2497
SinI	GGWCC	3 cut(s)	116, 1923, 2299
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	3 cut(s)	365, 498, 2697
SmlI	CTYRAG	4 cut(s)	750, 1620, 2039, 2250
SmoI	CTYRAG	4 cut(s)	750, 1620, 2039, 2250
SseBI	AGGCCT	5 cut(s)	412, 964, 1355, 1441, 1816
SsiI	CCGC	7 cut(s)	238, 603, 1317, 2192, 2325, 2495, 2524
SspI	AATATT	1 cut(s)	991
SspMI	CTAG	5 cut(s)	408, 587, 782, 1074, 1443
SstI	GAGCTC	3 cut(s)	29, 849, 1893
StuI	AGGCCT	5 cut(s)	412, 964, 1355, 1441, 1816
StyD4I	CCNGG	8 cut(s)	412, 807, 1260, 1811, 2154, 2205, 2334, 2596
StyI	CCWWGG	7 cut(s)	333, 360, 407, 586, 1347, 1442, 1574
TaaI	ACNGT	8 cut(s)	262, 1097, 1474, 1672, 2019, 2074, 2317, 2605
TaiI	ACGT	1 cut(s)	2148
TaqI	TCGA	8 cut(s)	527, 699, 751, 1159, 1171, 1232, 1558, 2183
TatI	WGTACW	4 cut(s)	317, 570, 2283, 2515
TauI	GCSGC	2 cut(s)	241, 2527
TfiI	GAWTC	5 cut(s)	578, 696, 1275, 2736, 2844
TscAI	CASTG	8 cut(s)	260, 1537, 1637, 2077, 2119, 2326, 2575, 2608
TseFI	GTSAC	3 cut(s)	2146, 2221, 2500
TseI	GCWGC	7 cut(s)	1007, 2094, 2189, 2655, 2828, 2891, 2909
Tsp45I	GTSAC	3 cut(s)	2146, 2221, 2500
TspDTI	ATGAA	8 cut(s)	32, 699, 1253, 1413, 1605, 1658, 1877, 2497
TspGWI	ACGGA	1 cut(s)	1717
TspRI	CASTG	8 cut(s)	260, 1537, 1637, 2077, 2119, 2326, 2575, 2608
Tth111I	GACNNNGTC	1 cut(s)	1081
Van91I	CCANNNNNTGG	1 cut(s)	1054
Vha464I	CTTAAG	1 cut(s)	2039
VneI	GTGCAC	1 cut(s)	2779
VpaK11BI	GGWCC	3 cut(s)	116, 1923, 2299
VspI	ATTAAT	1 cut(s)	1970
XagI	CCTNNNNNAGG	1 cut(s)	1623
XapI	RAATTY	6 cut(s)	349, 740, 822, 1560, 1775, 2636
XceI	RCATGY	5 cut(s)	763, 1434, 1847, 2000, 2469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1268
XhoI	CTCGAG	1 cut(s)	750
XmaJI	CCTAGG	3 cut(s)	407, 586, 1442
XmiI	GTMKAC	2 cut(s)	629, 2574
XspI	CTAG	5 cut(s)	408, 587, 782, 1074, 1443
ZrmI	AGTACT	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	1858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.