Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003981

Physical Location & Seq

Genomic Coordinates Reverse (-)

34126547 .. 34131275

Gene Structure 4729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATGCTAAAGCCAAGAACAAGGCGCTGTTTCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAGCGCATAAACTCTCCCCTTGTACGGTATAATGATTCTGACCAGCCTGTATGCAAGATTTGTGACATTGTTTTGAAATCTGAATCCGTTTGGGACGCACATCAACTCTCTCGTAAACATAAAGAGGCAATAATTAACCTCAGAGCTACAGCAGGTGGAGTAAACCAAATAAACAGTGCAACTACTGAAGCCCATTCAGAATTGTCTAAACCTAACCATGGACATTCTTTGGAGTTGGAGGACCCTAAACCTGAGCGCTCTGCCGAGTTGCTTAGACCTCAGACGTCTTCTGGGCTTCCTCCGGGTTTTTTTGATAACCAGCCACAAAAGCGAAGTACAGGAACGGACTCTTACACATCAGTGGAGACTGATTCATACAAAAAGATGCAGAACAGAAGTGTTGAGCCTTCTGGGGACCTTACAAAGGCAGCGTCACAGATTTCCAGTCCACAAGCTAAGCAAATGAAGGGAGCTCTTCCTGAAGGCTTCTTTGATAACAAGGAGGCGGATTTATCTGCACGCGGAATAAAGCTTGTCAAGCCAGATGTCAAAGATGAGTACAAAGAATTTGAGAAGTTGATTCAAGAGGACTTGAAGGAGGTTGACAATCGTTTAGAAGAGGAGGAGATTGATGCAGCTGAAATGATAGAAGAGGCCGAATCTGTAGAGCAAAAAACATATAGGGAGAAAGTGAAATTGATGAGAAAGAAGAGAATGGAGTTGAAGGCTGCCAATGCTGCCAAGCGTAGAAAAGCTTCGGAATTTGACAAGAAGGAGGAGCCCAGTCATGAAGAGTCATCTAGTGATGGTGACAGTGATGAGAATTTTGCAGTGGATTGGAGAGCTCAACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010586 GO:0016070 GO:0019827 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0035019 GO:0035198 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0046483 GO:0048509 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0061980 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:0098727 GO:1901360 GO:1901363 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

306

Amino Acids

34.59

Weight (kDa)

6.08

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_jaz	PF12171	37 - 62	1.2e-06	Zinc-finger double-stranded RNA-binding
zf-met	PF12874	38 - 61	3.3e-07	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43810 AT5G43810 AT5G43810 AT5G43810
fragaria_vesca	FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630 FvH4_4g01630
malus_domestica	MD13G1201400.v1.1 MD16G1201200.v1.1
prunus_persica	Prupe.1G022900_v2.0.a1 Prupe.1G022900_v2.0.a1
pyrus_communis	pycom13g17460 pycom16g16970
rosa_chinensis	RchiOBHm_Chr4g0388221 RchiOBHm_Chr4g0388231
rosa_laevigata	RLG00000010073
rosa_roxburghii	Rroxscaffold_5G00334710
rosa_rugosa	Rorug03G0316100 Rorug03G0316200 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316300 Rorug03G0316400
rosa_samantha	Rh4AG021700 Rh4BG015800 Rh4CG021900 Rh4DG016600
rosa_wichuraiana	Rw4G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	206
AccII	CGCG	1 cut(s)	585
AciI	CCGC	2 cut(s)	569, 585
AcsI	RAATTY	3 cut(s)	629, 824, 886
AcuI	CTGAAG	2 cut(s)	270, 564
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	3 cut(s)	87, 400, 623
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
AgsI	TTSAA	5 cut(s)	46, 139, 647, 658, 787
AleI	CACNNNNGTG	1 cut(s)	422
AluBI	AGCT	7 cut(s)	209, 518, 536, 595, 701, 818, 908
AluI	AGCT	7 cut(s)	209, 518, 536, 595, 701, 818, 908
Alw21I	GWGCWC	2 cut(s)	538, 910
Alw26I	GTCTC	1 cut(s)	422
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	4 cut(s)	491, 698, 791, 800
ApoI	RAATTY	3 cut(s)	629, 824, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	817
AspLEI	GCGC	3 cut(s)	28, 69, 321
AspS9I	GGNCC	2 cut(s)	304, 478
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	884
AvaII	GGWCC	2 cut(s)	304, 478
BanII	GRGCYC	3 cut(s)	538, 846, 910
BarI	GAAGNNNNNNTAC	2 cut(s)	802, 834
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	538, 910
BbvI	GCAGC	4 cut(s)	503, 710, 778, 787
BccI	CCATC	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	2 cut(s)	210, 726
BfoI	RGCGCY	2 cut(s)	29, 322
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	4 cut(s)	492, 699, 792, 801
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	4 cut(s)	493, 700, 793, 802
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	304, 478
BmgT120I	GGNCC	2 cut(s)	304, 478
BmiI	GGNNCC	3 cut(s)	306, 479, 843
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	438, 685
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
Bse1I	ACTGG	2 cut(s)	507, 846
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
BseMII	CTCAG	3 cut(s)	217, 306, 356
BseNI	ACTGG	2 cut(s)	507, 846
BseRI	GAGGAG	3 cut(s)	698, 701, 854
BseXI	GCAGC	4 cut(s)	503, 710, 778, 787
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	719
BsiHKAI	GWGCWC	2 cut(s)	538, 910
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	170, 491
BslI	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	170, 491
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	719
Bsp1286I	GDGCHC	3 cut(s)	538, 846, 910
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	2 cut(s)	569, 585
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	3 cut(s)	216, 307, 355
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	3 cut(s)	306, 479, 843
BspMI	ACCTGC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	507, 846
BssECI	CCNNGG	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	90, 239, 878
Bst6I	CTCTTC	5 cut(s)	543, 675, 708, 767, 849
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	5 cut(s)	203, 315, 335, 342, 519
BstDSI	CCRYGG	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	2 cut(s)	29, 322
BstHHI	GCGC	3 cut(s)	28, 69, 321
BstMAI	GTCTC	1 cut(s)	422
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 601, 797, 800
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	210, 726
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	503, 710, 778, 787
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	4 cut(s)	244, 429, 883, 900
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	583
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	3 cut(s)	28, 69, 321
Cfr13I	GGNCC	2 cut(s)	304, 478
CseI	GACGC	2 cut(s)	167, 483
Csp6I	GTAC	3 cut(s)	86, 399, 622
CviAII	CATG	2 cut(s)	281, 851
CviQI	GTAC	3 cut(s)	86, 399, 622
DdeI	CTNAG	5 cut(s)	203, 315, 335, 342, 519
Eam1104I	CTCTTC	5 cut(s)	543, 675, 708, 767, 849
EarI	CTCTTC	5 cut(s)	543, 675, 708, 767, 849
EciI	GGCGGA	1 cut(s)	584
Ecl136II	GAGCTC	2 cut(s)	536, 908
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	3 cut(s)	538, 846, 910
Eco47I	GGWCC	2 cut(s)	304, 478
Eco47III	AGCGCT	1 cut(s)	320
Eco53kI	GAGCTC	2 cut(s)	536, 908
Eco57I	CTGAAG	2 cut(s)	270, 564
EcoICRI	GAGCTC	2 cut(s)	536, 908
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	2 cut(s)	304, 478
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	3 cut(s)	538, 846, 910
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	284, 854
FaiI	YATR	9 cut(s)	71, 93, 115, 183, 282, 439, 742, 744, 852
FaqI	GGGAC	2 cut(s)	170, 491
FatI	CATG	2 cut(s)	280, 850
Fnu4HI	GCNGC	4 cut(s)	492, 699, 792, 801
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	3 cut(s)	538, 846, 910
Fsp4HI	GCNGC	4 cut(s)	492, 699, 792, 801
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	3 cut(s)	27, 68, 320
GluI	GCNGC	4 cut(s)	492, 699, 792, 801
HaeII	RGCGCY	2 cut(s)	29, 322
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	2 cut(s)	167, 483
HhaI	GCGC	3 cut(s)	28, 69, 321
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	284, 854
Hin6I	GCGC	3 cut(s)	26, 67, 319
HinP1I	GCGC	3 cut(s)	26, 67, 319
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	2 cut(s)	593, 816
HinfI	GANTC	7 cut(s)	98, 146, 410, 434, 643, 722, 857
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	4 cut(s)	179, 226, 512, 667
Hpy188I	TCNGA	6 cut(s)	103, 145, 206, 262, 345, 823
Hpy188III	TCNNGA	3 cut(s)	542, 647, 851
Hpy8I	GTNNAC	4 cut(s)	179, 226, 512, 667
HpyAV	CCTTC	7 cut(s)	52, 480, 523, 539, 652, 781, 829
HpyCH4III	ACNGT	3 cut(s)	90, 239, 878
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	6 cut(s)	117, 242, 451, 581, 698, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 601, 797, 800
HpyF3I	CTNAG	5 cut(s)	203, 315, 335, 342, 519
HpySE526I	ACGT	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	284, 854
HspAI	GCGC	3 cut(s)	26, 67, 319
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	533, 841
Lsp1109I	GCAGC	4 cut(s)	503, 710, 778, 787
LweI	GCATC	2 cut(s)	438, 685
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	125, 495, 872
MboII	GAAGA	7 cut(s)	67, 342, 530, 692, 725, 784, 866
MhlI	GDGCHC	3 cut(s)	538, 846, 910
MluCI	AATT	7 cut(s)	41, 195, 263, 629, 758, 824, 886
MlyI	GAGTC	2 cut(s)	404, 866
MmeI	TCCRAC	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	52
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	391, 601, 797, 800
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	280
NlaIII	CATG	2 cut(s)	284, 854
NlaIV	GGNNCC	3 cut(s)	306, 479, 843
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	125, 495, 872
OliI	CACNNNNGTG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	850
PaqCI	CACCTGC	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	543
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	5 cut(s)	98, 146, 434, 643, 722
PkrI	GCNGC	4 cut(s)	493, 700, 793, 802
PleI	GAGTC	2 cut(s)	404, 865
PpsI	GAGTC	2 cut(s)	404, 865
PpuMI	RGGWCCY	2 cut(s)	304, 478
Psp124BI	GAGCTC	2 cut(s)	538, 910
Psp5II	RGGWCCY	2 cut(s)	304, 478
PspN4I	GGNNCC	3 cut(s)	306, 479, 843
PspPI	GGNCC	2 cut(s)	304, 478
PspPPI	RGGWCCY	2 cut(s)	304, 478
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	87, 400, 623
RsaNI	GTAC	3 cut(s)	86, 399, 622
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	2 cut(s)	538, 910
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	492, 699, 792, 801
Sau96I	GGNCC	2 cut(s)	304, 478
SchI	GAGTC	2 cut(s)	404, 866
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	3 cut(s)	538, 846, 910
SfaNI	GCATC	2 cut(s)	438, 685
SfcI	CTRYAG	2 cut(s)	210, 726
SinI	GGWCC	2 cut(s)	304, 478
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	7 cut(s)	41, 195, 263, 629, 758, 824, 886
SsiI	CCGC	2 cut(s)	569, 585
SspMI	CTAG	1 cut(s)	864
SstI	GAGCTC	2 cut(s)	538, 910
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	90, 239, 878
TaiI	ACGT	1 cut(s)	350
TasI	AATT	7 cut(s)	41, 195, 263, 629, 758, 824, 886
TatI	WGTACW	2 cut(s)	398, 621
TfiI	GAWTC	5 cut(s)	98, 146, 434, 643, 722
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	4 cut(s)	244, 429, 883, 900
TseFI	GTSAC	3 cut(s)	125, 495, 872
TseI	GCWGC	4 cut(s)	491, 698, 791, 800
Tsp45I	GTSAC	3 cut(s)	125, 495, 872
TspDTI	ATGAA	3 cut(s)	426, 542, 867
TspGWI	ACGGA	2 cut(s)	139, 422
TspRI	CASTG	4 cut(s)	244, 429, 883, 900
VpaK11BI	GGWCC	2 cut(s)	304, 478
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	3 cut(s)	629, 824, 886
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	1 cut(s)	864
ZraI	GACGTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.