Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Reverse (-)

18359275 .. 18361213

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGATCTTGGAGGTTTGATTTCTGGGTTGGTCTCATCTTCATTATATCTTATGACCAGACCTTTCTTTTTCTGCATATACGCATGTGTGTTCTGTCTTAGAACAGCTCTTGTTACAACCTTTGTATCTACTGATATGGTGACTTCTGCAATTTGGTTCAACTTAAGTATGCTGTGGAGAGCTGTACGGGGCTCTATCTGGGGATCCGTTCTTCTTTTTACGTTCCCGATTCGCTTTTTCGCCTCTATACCAAGGGAAAGACTGCTTGAGCAGAGTATTTATGATTTGAGGTATGAGCTAGAGAGTCTTGAATGGAATAGAAAAGAGATAGAGAAGAATCTCCGGGAAGCAATAAAAGAATATCGAATCATGGAACAGGACTTAGATGAACTAGAAGATGAACATGATGAAGCCATTTCCAAAATAGAAAAGCTAGAGGCCGAGCTACAAGAACTAAAGGAGGAAAATCTTCAACTGATGGAAGTTAATGGAAAAGACTATAGGAGCAAGAAGGGCAAAGTTAAACCAAGTGAAGAACCAAGCGAAATCCGTAGCATACATAAGCCTAAGAATATCCCTTATGCATCAAAGGGAAAAGCCGAGTTTACATCGGTTAAATCACCTCTTTACCCGTTTGCGAAATCGACAATTCCAAAAGACGAAGAATTGACGCCAAGAGTCCTCGGTTTAGAGAAGAACATTGCGGTTTCAAGAAGCGTATTCAGCGCGATGCTCGCTCTAGTGGTGGGTATAGTAATGTATGAAGCCAAAGAACAAGAGCTGTGTACTCCACTTATAGGAGCACTCTTCACAGTGGTTGGTATCTCTTTGAAAAGTGTGGTTCAATTTTTCTCTACGGTTAAGAATAAACCGGCTTTAGATGCAGTTGCTCTTATGAGTCTCAACTGGTTTATCGTTGGTACTCTTACTTACCCGACTCTACCAAGAGTTGCTCGAATTGTGGTCCCACGAGTCTTTAACACCGTCGGCTCGGTCTTCGCTTTGCTCCATGGTGGCTCACTCCCCTCGCCACCAGAGTTTGTGAACTATGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

39.8

Weight (kDa)

6.4

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	728
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	3 cut(s)	12, 198, 211
AcyI	GRCGYC	1 cut(s)	671
AfaI	GTAC	3 cut(s)	186, 787, 922
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	6 cut(s)	160, 311, 473, 711, 832, 845
AluBI	AGCT	6 cut(s)	107, 182, 298, 433, 445, 781
AluI	AGCT	6 cut(s)	107, 182, 298, 433, 445, 781
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	2 cut(s)	37, 905
AlwI	GGATC	3 cut(s)	12, 198, 211
AoxI	GGCC	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	1 cut(s)	964
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	151, 612
AvaII	GGWCC	1 cut(s)	964
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BamHI	GGATCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	988
Bbv12I	GWGCWC	1 cut(s)	805
BccI	CCATC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	37, 905
BfaI	CTAG	4 cut(s)	299, 392, 434, 740
BfmI	CTRYAG	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	964
BmgT120I	GGNCC	1 cut(s)	964
BmiI	GGNNCC	2 cut(s)	205, 966
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	3 cut(s)	593, 720, 871
BpiI	GAAGAC	1 cut(s)	988
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	671
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	251, 682, 1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse118I	RCCGGY	1 cut(s)	871
Bse1I	ACTGG	1 cut(s)	911
Bse3DI	GCAATG	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	251, 682, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	911
Bsh1236I	CGCG	1 cut(s)	728
BshFI	GGCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	805
BsiSI	CCGG	2 cut(s)	343, 872
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	2 cut(s)	37, 905
BsmFI	GGGAC	1 cut(s)	950
BsnI	GGCC	1 cut(s)	440
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	194, 805
Bsp143I	GATC	2 cut(s)	4, 203
Bsp19I	CCATGG	1 cut(s)	1009
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	728
BspLI	GGNNCC	2 cut(s)	205, 966
BspPI	GGATC	3 cut(s)	12, 198, 211
BspTI	CTTAAG	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	871
BsrI	ACTGG	1 cut(s)	911
BssAI	RCCGGY	1 cut(s)	871
BssECI	CCNNGG	3 cut(s)	251, 682, 1009
BssMI	GATC	2 cut(s)	4, 203
BssNI	GRCGYC	1 cut(s)	671
BssSI	CACGAG	1 cut(s)	969
BssT1I	CCWWGG	2 cut(s)	251, 1009
Bst2BI	CACGAG	1 cut(s)	969
Bst4CI	ACNGT	3 cut(s)	814, 859, 985
Bst6I	CTCTTC	1 cut(s)	812
BstACI	GRCGYC	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	3 cut(s)	98, 382, 567
BstDSI	CCRYGG	1 cut(s)	1009
BstFNI	CGCG	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	2 cut(s)	7, 206
BstMAI	GTCTC	2 cut(s)	37, 905
BstMBI	GATC	2 cut(s)	4, 203
BstMWI	GCNNNNNNNGC	4 cut(s)	513, 723, 734, 881
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	728
BstV2I	GAAGAC	1 cut(s)	988
BstX2I	RGATCY	2 cut(s)	4, 203
BstYI	RGATCY	2 cut(s)	4, 203
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	1009
BtgZI	GCGATG	1 cut(s)	743
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	735
CfoI	GCGC	1 cut(s)	728
Cfr10I	RCCGGY	1 cut(s)	871
Cfr13I	GGNCC	1 cut(s)	964
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	3 cut(s)	185, 786, 921
CviAII	CATG	4 cut(s)	84, 370, 404, 1010
CviQI	GTAC	3 cut(s)	185, 786, 921
DdeI	CTNAG	3 cut(s)	98, 382, 567
DpnI	GATC	2 cut(s)	6, 205
DpnII	GATC	2 cut(s)	4, 203
Eam1104I	CTCTTC	1 cut(s)	812
EarI	CTCTTC	1 cut(s)	812
Eco130I	CCWWGG	2 cut(s)	251, 1009
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	964
EcoT14I	CCWWGG	2 cut(s)	251, 1009
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	251, 1009
FaeI	CATG	4 cut(s)	87, 373, 407, 1013
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	4 cut(s)	83, 369, 403, 1009
FriOI	GRGCYC	1 cut(s)	194
FspBI	CTAG	4 cut(s)	299, 392, 434, 740
GlaI	GCGC	1 cut(s)	727
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	2 cut(s)	343, 872
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	728
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	87, 373, 407, 1013
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HinfI	GANTC	8 cut(s)	229, 304, 337, 366, 678, 898, 937, 972
HpaII	CCGG	2 cut(s)	343, 872
HphI	GGTGA	2 cut(s)	151, 612
Hpy166II	GTNNAC	3 cut(s)	606, 786, 1045
Hpy188III	TCNNGA	3 cut(s)	226, 308, 711
Hpy8I	GTNNAC	3 cut(s)	606, 786, 1045
Hpy99I	CGWCG	1 cut(s)	989
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	3 cut(s)	814, 859, 985
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	75, 149, 584, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	513, 723, 734, 881
HpyF3I	CTNAG	3 cut(s)	98, 382, 567
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	87, 373, 407, 1013
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	4, 203
LmnI	GCTCC	3 cut(s)	504, 800, 1011
LpnPI	CCDG	8 cut(s)	9, 70, 184, 356, 362, 885, 892, 1047
LweI	GCATC	3 cut(s)	593, 720, 871
MaeI	CTAG	4 cut(s)	299, 392, 434, 740
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	112, 139
MalI	GATC	2 cut(s)	6, 205
MboI	GATC	2 cut(s)	4, 203
MflI	RGATCY	2 cut(s)	4, 203
MhlI	GDGCHC	2 cut(s)	194, 805
MluCI	AATT	5 cut(s)	150, 648, 665, 845, 957
MlyI	GAGTC	5 cut(s)	313, 687, 907, 931, 981
MnlI	CCTC	8 cut(s)	5, 253, 282, 430, 454, 633, 692, 1036
Mph1103I	ATGCAT	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	7 cut(s)	164, 486, 522, 615, 861, 978, 1057
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	2 cut(s)	343, 872
MspR9I	CCNGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	728
MwoI	GCNNNNNNNGC	4 cut(s)	513, 723, 734, 881
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	1009
NdeII	GATC	2 cut(s)	4, 203
NlaIII	CATG	4 cut(s)	87, 373, 407, 1013
NlaIV	GGNNCC	2 cut(s)	205, 966
NmeAIII	GCCGAG	2 cut(s)	466, 625
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	229, 337, 366
PfoI	TCCNGGA	1 cut(s)	342
PleI	GAGTC	5 cut(s)	312, 686, 906, 931, 980
PpsI	GAGTC	5 cut(s)	312, 686, 906, 931, 980
PspN4I	GGNNCC	2 cut(s)	205, 966
PspPI	GGNCC	1 cut(s)	964
PsuI	RGATCY	2 cut(s)	4, 203
RsaI	GTAC	3 cut(s)	186, 787, 922
RsaNI	GTAC	3 cut(s)	185, 786, 921
SaqAI	TTAA	7 cut(s)	164, 486, 522, 615, 861, 978, 1057
Sau3AI	GATC	2 cut(s)	4, 203
Sau96I	GGNCC	1 cut(s)	964
SchI	GAGTC	5 cut(s)	313, 687, 907, 931, 981
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	194, 805
SfaNI	GCATC	3 cut(s)	593, 720, 871
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	964
SmlI	CTYRAG	2 cut(s)	163, 266
SmoI	CTYRAG	2 cut(s)	163, 266
Sse9I	AATT	5 cut(s)	150, 648, 665, 845, 957
SsiI	CCGC	1 cut(s)	704
SspMI	CTAG	4 cut(s)	299, 392, 434, 740
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	251, 1009
TaaI	ACNGT	3 cut(s)	814, 859, 985
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	364, 644, 955
TaqII	GACCGA	1 cut(s)	982
TasI	AATT	5 cut(s)	150, 648, 665, 845, 957
TatI	WGTACW	1 cut(s)	785
TfiI	GAWTC	3 cut(s)	229, 337, 366
Tru1I	TTAA	7 cut(s)	164, 486, 522, 615, 861, 978, 1057
Tru9I	TTAA	7 cut(s)	164, 486, 522, 615, 861, 978, 1057
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	5 cut(s)	30, 402, 414, 423, 777
TspGWI	ACGGA	2 cut(s)	196, 539
TspRI	CASTG	1 cut(s)	819
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	964
XceI	RCATGY	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	4 cut(s)	299, 392, 434, 740
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.