Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Forward (+)

16139357 .. 16143692

Gene Structure 4336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCATTGATTGCTGAGTTATTAACTGCCACAATAATCGTGGCTACTAGGCCTTTCTCACTTCTCAAGCTTATGTGCATGTTTGGAGTAAAAACTGTTTTCCTTTTCATTAGTCTATGGACAGAGTTGTTGAAGTCAGTAATCAGCTTGCATGTGAATTTATTCTGGCGAATCATCATATGGGGAGTTGCTATTATATCTCTGCCTGGACGTATTTTGACTGCCTTACAAAGGGAAAGACATCTGGAAATGCATTTACATAATATGCAAATCAACCTCGAGAATCTGGCATGGGATAGGAAAGAGCTTGAGGAACATCTACAAAGAGCAATTAGAGAACAAAAAATGATGGAGTTGATATTAGCAGAGCTTGAAGAAGAACATGATAAGGTCATTGCCAAAATTGAACTGCTAGTGGGCGAGTTGCAGGATCTGAAAACTGAAAATCTTCGGCTGAAAGAAGTTCAAGGAAAGAGCTATTGGAACTTTAAAGGTCGAGATGAAACAAGTGATGTCCATAATACAGCAGTCGCTGACTATGGAATTCCATACGGGATCCCATCATGGAAATCCAGTTATGATGGAAGTGGCATTGTCCTCCAGGATCTTCTAATGCACAAAGATCCGTGGGGAGAAGAGAGTAAACCTAAAACCGAGTTGAAGATCTTAAAAAATGATCCAAAGTATGTTGGGCCTCTTCATCCTATTATGCCTTCAAACAACACCAGAATTGTAGATTTGGCGGAAGTTTTCAACCAACGAAGGGTTATTGCAATGAAACAGAGTCTATTTAGTGCAGTATTATCGCTTTTGGTTGGAGTGACTATCTGGCAAGCTGAGGAGCCTTGCATGCCCCTTGTTGTGGCTCTCTTCACAGTTGTCGGCATGTCTTTAAAGAGTGTTTTTGAGTTTTTCTCAACCATAAAGAACAGACCTGCTTCGGACGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGAACACTTACCTACCCAACACTGCCGAGGGTTGCCCTTATGGTGGCACCAGTGGCATCAAATCTTGCGCACCAGGCATTAAGCTGGCTTGGTTTCTCTTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

41.13

Weight (kDa)

6.57

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1050
Acc36I	ACCTGC	1 cut(s)	943
AccB1I	GGYRCC	1 cut(s)	1027
AciI	CCGC	1 cut(s)	743
AclWI	GGATC	6 cut(s)	438, 550, 563, 612, 617, 671
AcsI	RAATTY	2 cut(s)	157, 543
AfiI	CCNNNNNNNGG	4 cut(s)	231, 763, 862, 1024
AflII	CTTAAG	1 cut(s)	958
AgsI	TTSAA	8 cut(s)	133, 374, 407, 467, 661, 717, 754, 967
AjnI	CCWGG	3 cut(s)	205, 600, 1053
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AluBI	AGCT	8 cut(s)	70, 147, 307, 370, 477, 836, 963, 1065
AluI	AGCT	8 cut(s)	70, 147, 307, 370, 477, 836, 963, 1065
AlwI	GGATC	6 cut(s)	438, 550, 563, 612, 617, 671
AlwNI	CAGNNNCTG	2 cut(s)	433, 533
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	50, 692
ApoI	RAATTY	2 cut(s)	157, 543
Asp700I	GAANNNNTTC	2 cut(s)	161, 447
AspLEI	GCGC	1 cut(s)	1051
AspS9I	GGNCC	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	1027
BbvCI	CCTCAGC	1 cut(s)	837
BccI	CCATC	3 cut(s)	343, 568, 575
BcgI	CGANNNNNNTGC	2 cut(s)	786, 820
BciT130I	CCWGG	3 cut(s)	207, 602, 1055
BfaI	CTAG	3 cut(s)	48, 413, 1087
BfrI	CTTAAG	1 cut(s)	958
BfuAI	ACCTGC	1 cut(s)	943
BglII	AGATCT	1 cut(s)	663
Bme1390I	CCNGG	3 cut(s)	207, 602, 1055
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	3 cut(s)	557, 843, 1029
BmrFI	CCNGG	3 cut(s)	207, 602, 1055
BmsI	GCATC	1 cut(s)	1046
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	2 cut(s)	50, 329
BsaJI	CCNNGG	2 cut(s)	626, 1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	231, 763, 862, 1024
Bse1I	ACTGG	3 cut(s)	573, 974, 1031
Bse3DI	GCAATG	2 cut(s)	393, 780
BseBI	CCWGG	3 cut(s)	207, 602, 1055
BseDI	CCNNGG	2 cut(s)	626, 1007
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	4 cut(s)	231, 763, 862, 1024
BseMI	GCAATG	2 cut(s)	393, 780
BseMII	CTCAG	2 cut(s)	6, 828
BseNI	ACTGG	3 cut(s)	573, 974, 1031
BseRI	GAGGAG	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	2 cut(s)	52, 694
BshNI	GGYRCC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	278
BslI	CCNNNNNNNGG	4 cut(s)	231, 763, 862, 1024
BsnI	GGCC	2 cut(s)	52, 694
BsoBI	CYCGRG	1 cut(s)	278
Bsp143I	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	2 cut(s)	52, 694
BspCNI	CTCAG	2 cut(s)	7, 829
BspLI	GGNNCC	3 cut(s)	557, 843, 1029
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	6 cut(s)	438, 550, 563, 612, 617, 671
BspT107I	GGYRCC	1 cut(s)	1027
BspTI	CTTAAG	1 cut(s)	958
BsrDI	GCAATG	2 cut(s)	393, 780
BsrI	ACTGG	3 cut(s)	573, 974, 1031
BssECI	CCNNGG	2 cut(s)	626, 1007
BssMI	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
Bst2UI	CCWGG	3 cut(s)	207, 602, 1055
Bst4CI	ACNGT	2 cut(s)	97, 877
Bst6I	CTCTTC	3 cut(s)	630, 702, 875
BstAFI	CTTAAG	1 cut(s)	958
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	149, 834, 851, 1067
BstDEI	CTNAG	2 cut(s)	15, 837
BstDSI	CCRYGG	1 cut(s)	626
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	1051
BstKTI	GATC	6 cut(s)	433, 558, 607, 625, 666, 679
BstMBI	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 850, 944, 1034, 1055
BstNI	CCWGG	3 cut(s)	207, 602, 1055
BstNSI	RCATGY	4 cut(s)	82, 155, 853, 889
BstSCI	CCNGG	3 cut(s)	205, 600, 1053
BstX2I	RGATCY	5 cut(s)	430, 555, 604, 622, 663
BstYI	RGATCY	5 cut(s)	430, 555, 604, 622, 663
BsuRI	GGCC	2 cut(s)	52, 694
BtgI	CCRYGG	1 cut(s)	626
BtsCI	GGATG	1 cut(s)	700
BtsI	GCAGTG	1 cut(s)	1001
BtsIMutI	CAGTG	2 cut(s)	1001, 1038
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	4 cut(s)	149, 834, 851, 1067
CaiI	CAGNNNCTG	2 cut(s)	433, 533
CfoI	GCGC	1 cut(s)	1051
Cfr13I	GGNCC	1 cut(s)	692
CseI	GACGC	1 cut(s)	953
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	7 cut(s)	79, 152, 291, 383, 564, 850, 886
DdeI	CTNAG	2 cut(s)	15, 837
DpnI	GATC	6 cut(s)	432, 557, 606, 624, 665, 678
DpnII	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
DraI	TTTAAA	2 cut(s)	490, 894
Eam1104I	CTCTTC	3 cut(s)	630, 702, 875
EarI	CTCTTC	3 cut(s)	630, 702, 875
EciI	GGCGGA	1 cut(s)	758
Eco147I	AGGCCT	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	205, 600, 1053
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	7 cut(s)	82, 155, 294, 386, 567, 853, 889
FatI	CATG	7 cut(s)	78, 151, 290, 382, 563, 849, 885
FauNDI	CATATG	1 cut(s)	179
FokI	GGATG	1 cut(s)	687
FspBI	CTAG	3 cut(s)	48, 413, 1087
FspI	TGCGCA	1 cut(s)	1050
GlaI	GCGC	1 cut(s)	1050
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	52, 694
HgaI	GACGC	1 cut(s)	953
HhaI	GCGC	1 cut(s)	1051
Hin1II	CATG	7 cut(s)	82, 155, 294, 386, 567, 853, 889
Hin6I	GCGC	1 cut(s)	1049
HinP1I	GCGC	1 cut(s)	1049
HindIII	AAGCTT	2 cut(s)	68, 961
HinfI	GANTC	3 cut(s)	171, 283, 784
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	2 cut(s)	435, 943
Hpy188III	TCNNGA	3 cut(s)	245, 280, 497
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	2 cut(s)	723, 756
HpyCH4III	ACNGT	2 cut(s)	97, 877
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	9 cut(s)	78, 151, 253, 268, 427, 616, 773, 797, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 850, 944, 1034, 1055
HpyF3I	CTNAG	2 cut(s)	15, 837
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	7 cut(s)	82, 155, 294, 386, 567, 853, 889
HspAI	GCGC	1 cut(s)	1049
Kzo9I	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
LmnI	GCTCC	1 cut(s)	841
LweI	GCATC	1 cut(s)	1046
MaeI	CTAG	3 cut(s)	48, 413, 1087
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	6 cut(s)	432, 557, 606, 624, 665, 678
MboI	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
MboII	GAAGA	8 cut(s)	386, 389, 440, 599, 647, 673, 689, 862
MflI	RGATCY	5 cut(s)	430, 555, 604, 622, 663
MluCI	AATT	5 cut(s)	157, 330, 402, 543, 729
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	6 cut(s)	287, 304, 608, 705, 832, 1002
Mph1103I	ATGCAT	1 cut(s)	255
MroXI	GAANNNNTTC	2 cut(s)	161, 447
MseI	TTAA	6 cut(s)	23, 489, 668, 893, 959, 1061
MspCI	CTTAAG	1 cut(s)	958
MspR9I	CCNGG	3 cut(s)	207, 602, 1055
MvaI	CCWGG	3 cut(s)	207, 602, 1055
MwoI	GCNNNNNNNGC	5 cut(s)	11, 850, 944, 1034, 1055
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
NlaIII	CATG	7 cut(s)	82, 155, 294, 386, 567, 853, 889
NlaIV	GGNNCC	3 cut(s)	557, 843, 1029
NmeAIII	GCCGAG	1 cut(s)	1032
NmuCI	GTSAC	1 cut(s)	820
NsbI	TGCGCA	1 cut(s)	1050
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	4 cut(s)	82, 155, 853, 889
PaeI	GCATGC	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	161, 447
PfeI	GAWTC	2 cut(s)	171, 283
PfoI	TCCNGGA	1 cut(s)	600
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	205, 600, 1053
PspGI	CCWGG	3 cut(s)	205, 600, 1053
PspN4I	GGNNCC	3 cut(s)	557, 843, 1029
PspPI	GGNCC	1 cut(s)	692
PstNI	CAGNNNCTG	2 cut(s)	433, 533
PsuI	RGATCY	5 cut(s)	430, 555, 604, 622, 663
SaqAI	TTAA	6 cut(s)	23, 489, 668, 893, 959, 1061
Sau3AI	GATC	6 cut(s)	430, 555, 604, 622, 663, 676
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	3 cut(s)	207, 602, 1055
SfaNI	GCATC	1 cut(s)	1046
Sfr274I	CTCGAG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	4 cut(s)	65, 278, 308, 958
SmoI	CTYRAG	4 cut(s)	65, 278, 308, 958
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	5 cut(s)	157, 330, 402, 543, 729
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	3 cut(s)	48, 413, 1087
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	205, 600, 1053
TaaI	ACNGT	2 cut(s)	97, 877
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	279, 496
TasI	AATT	5 cut(s)	157, 330, 402, 543, 729
TfiI	GAWTC	2 cut(s)	171, 283
Tru1I	TTAA	6 cut(s)	23, 489, 668, 893, 959, 1061
Tru9I	TTAA	6 cut(s)	23, 489, 668, 893, 959, 1061
TscAI	CASTG	2 cut(s)	1008, 1038
TseFI	GTSAC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	5 cut(s)	97, 516, 689, 791, 964
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	2 cut(s)	1008, 1038
Vha464I	CTTAAG	1 cut(s)	958
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	157, 543
XceI	RCATGY	4 cut(s)	82, 155, 853, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	278
XmnI	GAANNNNTTC	2 cut(s)	161, 447
XspI	CTAG	3 cut(s)	48, 413, 1087
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.