pycom16g25750

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
27872962 .. 27873246
285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25750.1

Sequence Viewer

Length: 285 bp
ATGGAGTTGCTCAAAATCTTGAGAAATGAACCAATATCCACTGGACCTATACATCCTGTTATGCCTGAAATCAGCCTCAGAAGTTTAGATATGAGTGAAGTTATCGACCATCGAAGGGGTATTGCAGTCAAACAGACTCTTTTCAGTGCAGCGTTATCACATGTGGTTGGAATGATTGTTTGGCAAGCTGAAGACCCTTGCATGCCCCCTTATCGTGGCTCTCTTCTCTGTGGTTGGTATGTCATTGAAGAGTGTGGTTCAGTTTTTCTCTACCATAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.64

Weight (kDa)

5.75

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 115, 215
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 117
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 215
Bse1I ACTGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 115, 215
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 115, 215
BspCNI CTCAG 1 cut(s) 90
BsrI ACTGG 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 228, 243
BstC8I GCNNGC 2 cut(s) 186, 203
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 52
BstNSI RCATGY 2 cut(s) 164, 205
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 39, 151
Cac8I GCNNGC 2 cut(s) 186, 203
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 2 cut(s) 161, 202
CviJI RGCY 3 cut(s) 75, 188, 219
CviKI_1 RGCY 3 cut(s) 75, 188, 219
DdeI CTNAG 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 228, 243
EarI CTCTTC 2 cut(s) 228, 243
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 2 cut(s) 164, 205
FaiI YATR 7 cut(s) 50, 62, 92, 162, 203, 240, 276
FatI CATG 2 cut(s) 160, 201
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 164, 205
HinfI GANTC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 125, 149, 201
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 2 cut(s) 164, 205
LpnPI CCDG 3 cut(s) 27, 69, 78
Lsp1109I GCAGC 1 cut(s) 161
MboII GAAGA 3 cut(s) 203, 215, 260
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 1 cut(s) 86
NlaIII CATG 2 cut(s) 164, 205
NspI RCATGY 2 cut(s) 164, 205
PaeI GCATGC 1 cut(s) 205
PciI ACATGT 1 cut(s) 160
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 160
PspPI GGNCC 1 cut(s) 44
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 130
SetI ASST 2 cut(s) 49, 190
SgeI CNNG 9 cut(s) 31, 54, 68, 77, 173, 197, 210, 214, 227
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SphI GCATGC 1 cut(s) 205
TaqI TCGA 2 cut(s) 105, 112
TscAI CASTG 2 cut(s) 46, 151
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 2 cut(s) 46, 151
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 2 cut(s) 164, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.