Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Forward (+)

32631170 .. 32635548

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCATTGATTTCTGAGTTATTATCTACCACAATAATCTTGGCTACTAGGCCCTTCTCACTTCTCAAGCTTTTGTGCATGTTTGGAGTAAAAACTGTTTTCCTTTTCATTAATCTATGGACAGAGTTGGTGAAGGCAATAGTCAGCTTCCATGTGAATTTATTCTGGAGAATCCTCATATGGTCAATTGCTATTATATATCTTCCTGGACGAATTTTGACGGCCTTACAAAGGGAGAGACATCTGGAACTGCATTTACATGATATGCAAATTGAGCTCCAGAATCTGGCATGGGATAGGAAAGAGCTTGAGGAACATCTACAAAAAGCAATTAAAGAACAAAAAATGATGGAGCTGATATTAGCAGAGCTTGAAGAAGAACATGACAAGGTCATTGCCAAAATTGAAGTGCTAGTGGGCGAGTTACAGGATCTGAAAACTGAAAATCTTCGGCTGAAAGAAGTTCAAGGAAAGAGCTATTGGAACTTTAAAGGTCGAGATGAAACAAGTGATGTCCATAATACAGCAATCGCTGACTATGGCATACCCTACGGGATCCCATCATGGAAATCCAGTTATAATGGAAGTGGTATTGTCCTCCAGGACCTTCTAATGCGCAAAGATGCGTGGGGAGAAGAAAGTAAACCTAAAACCGAGTTGCAGATCTTACGAAATGATTCAAAGTACGTTGGGCCTGTTCATCCTATTATGCCTGAAACCAACTCCAGAAATATTGTAGATATGGGTGAAGTTTTTAACCAACGAAGGGTTATTGCAATGAAACAGAGTCTATTTAGTGCAGTTTTATCGCTTATGGTTGGAGTGATTATCTGGCAAGCTGAAGACCCTTGCATGCCCCTTGTCGTGGCTCTCTTCACTGTAGTTGGCATGTCATTAAAGAGTGTTGTCGAGTTTTTCTCAACCATAAAGAACAGACCTGCTTCGGATGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGCACACTTACCTACCCAACACTGCCGAGGGTTGCCCATATGGTGGCACCAGTGGCATCAAATCTTGTGGGCCGGGCATTAAGCTGGCTTGGTTTCTCTTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

41.35

Weight (kDa)

6.52

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc16I	TGCGCA	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	946
AccB1I	GGYRCC	1 cut(s)	1030
AccB7I	CCANNNNNTGG	2 cut(s)	286, 1027
AclWI	GGATC	3 cut(s)	438, 550, 563
AcsI	RAATTY	2 cut(s)	157, 213
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
AflII	CTTAAG	1 cut(s)	961
AgsI	TTSAA	5 cut(s)	374, 407, 467, 681, 970
AjnI	CCWGG	2 cut(s)	205, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	438, 550, 563
AlwNI	CAGNNNCTG	2 cut(s)	286, 433
AoxI	GGCC	4 cut(s)	50, 222, 692, 1054
ApoI	RAATTY	2 cut(s)	157, 213
AseI	ATTAAT	1 cut(s)	111
Asp700I	GAANNNNTTC	3 cut(s)	161, 447, 676
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	4 cut(s)	51, 604, 692, 1054
AsuC2I	CCSGG	1 cut(s)	1058
AsuHPI	GGTGA	2 cut(s)	142, 758
AvaII	GGWCC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	1030
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	2 cut(s)	343, 568
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciT130I	CCWGG	2 cut(s)	207, 602
BcnI	CCSGG	1 cut(s)	1058
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	3 cut(s)	48, 413, 1090
BfmI	CTRYAG	1 cut(s)	879
BfrI	CTTAAG	1 cut(s)	961
BfuAI	ACCTGC	1 cut(s)	946
BglII	AGATCT	1 cut(s)	663
Bme1390I	CCNGG	3 cut(s)	207, 602, 1058
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	4 cut(s)	51, 604, 692, 1054
BmiI	GGNNCC	2 cut(s)	557, 1032
BmrFI	CCNGG	3 cut(s)	207, 602, 1058
BmsI	GCATC	3 cut(s)	613, 937, 1049
BpiI	GAAGAC	1 cut(s)	849
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
BpmI	CTGGAG	4 cut(s)	187, 263, 584, 709
BpuEI	CTTGAG	2 cut(s)	50, 329
BpuMI	CCSGG	1 cut(s)	1058
BsaJI	CCNNGG	1 cut(s)	1010
Bsc4I	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
Bse1I	ACTGG	3 cut(s)	573, 977, 1034
Bse3DI	GCAATG	2 cut(s)	393, 783
BseBI	CCWGG	2 cut(s)	207, 602
BseDI	CCNNGG	1 cut(s)	1010
BseGI	GGATG	2 cut(s)	700, 952
BseLI	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
BseMI	GCAATG	2 cut(s)	393, 783
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	573, 977, 1034
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	4 cut(s)	52, 224, 694, 1056
BshNI	GGYRCC	1 cut(s)	1030
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	1057
BslI	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	52, 224, 694, 1056
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	430, 555, 663
BspANI	GGCC	4 cut(s)	52, 224, 694, 1056
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	557, 1032
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	3 cut(s)	438, 550, 563
BspT107I	GGYRCC	1 cut(s)	1030
BspTI	CTTAAG	1 cut(s)	961
BsrDI	GCAATG	2 cut(s)	393, 783
BsrI	ACTGG	3 cut(s)	573, 977, 1034
BssECI	CCNNGG	1 cut(s)	1010
BssMI	GATC	3 cut(s)	430, 555, 663
Bst2UI	CCWGG	2 cut(s)	207, 602
Bst4CI	ACNGT	2 cut(s)	97, 880
Bst6I	CTCTTC	1 cut(s)	878
BstAFI	CTTAAG	1 cut(s)	961
BstC8I	GCNNGC	3 cut(s)	837, 854, 1070
BstDEI	CTNAG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	700, 952
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	3 cut(s)	433, 558, 666
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	430, 555, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 947, 1037
BstNI	CCWGG	2 cut(s)	207, 602
BstNSI	RCATGY	3 cut(s)	82, 856, 892
BstSCI	CCNGG	3 cut(s)	205, 600, 1056
BstSFI	CTRYAG	1 cut(s)	879
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	3 cut(s)	430, 555, 663
BstYI	RGATCY	3 cut(s)	430, 555, 663
BsuRI	GGCC	4 cut(s)	52, 224, 694, 1056
BtsCI	GGATG	2 cut(s)	700, 952
BtsI	GCAGTG	1 cut(s)	1004
BtsIMutI	CAGTG	3 cut(s)	876, 1004, 1041
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	3 cut(s)	837, 854, 1070
CaiI	CAGNNNCTG	2 cut(s)	286, 433
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	4 cut(s)	51, 604, 692, 1054
Csp6I	GTAC	1 cut(s)	685
CspCI	CAANNNNNGTGG	2 cut(s)	1032, 1067
CviAII	CATG	8 cut(s)	79, 152, 260, 291, 383, 564, 853, 889
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	432, 557, 665
DpnII	GATC	3 cut(s)	430, 555, 663
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	604
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	51, 604
EcoRII	CCWGG	2 cut(s)	205, 600
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 856, 892
FatI	CATG	8 cut(s)	78, 151, 259, 290, 382, 563, 852, 888
FauNDI	CATATG	2 cut(s)	179, 1023
FokI	GGATG	2 cut(s)	687, 959
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	3 cut(s)	48, 413, 1090
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	1 cut(s)	617
GsuI	CTGGAG	4 cut(s)	187, 263, 584, 709
HaeIII	GGCC	4 cut(s)	52, 224, 694, 1056
HapII	CCGG	1 cut(s)	1057
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 856, 892
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HindIII	AAGCTT	2 cut(s)	68, 964
HinfI	GANTC	4 cut(s)	171, 283, 677, 787
HpaII	CCGG	1 cut(s)	1057
HphI	GGTGA	2 cut(s)	142, 758
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	3 cut(s)	16, 435, 946
Hpy188III	TCNNGA	5 cut(s)	166, 245, 280, 497, 726
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	4 cut(s)	64, 127, 617, 759
HpyCH4III	ACNGT	2 cut(s)	97, 880
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	7 cut(s)	78, 253, 268, 661, 776, 800, 852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 947, 1037
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 856, 892
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	430, 555, 663
LmnI	GCTCC	2 cut(s)	282, 352
LweI	GCATC	3 cut(s)	613, 937, 1049
MaeI	CTAG	3 cut(s)	48, 413, 1090
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	3 cut(s)	432, 557, 665
MboI	GATC	3 cut(s)	430, 555, 663
MboII	GAAGA	7 cut(s)	194, 386, 389, 440, 647, 854, 865
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	3 cut(s)	430, 555, 663
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	6 cut(s)	157, 186, 213, 270, 330, 402
MlyI	GAGTC	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	799
MnlI	CCTC	4 cut(s)	185, 304, 608, 1005
MroXI	GAANNNNTTC	3 cut(s)	161, 447, 676
MseI	TTAA	7 cut(s)	111, 333, 489, 756, 896, 962, 1064
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	961
MspI	CCGG	1 cut(s)	1057
MspR9I	CCNGG	3 cut(s)	207, 602, 1058
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	207, 602
MwoI	GCNNNNNNNGC	3 cut(s)	274, 947, 1037
NciI	CCSGG	1 cut(s)	1058
NdeI	CATATG	2 cut(s)	179, 1023
NdeII	GATC	3 cut(s)	430, 555, 663
NlaIII	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 856, 892
NlaIV	GGNNCC	2 cut(s)	557, 1032
NmeAIII	GCCGAG	1 cut(s)	1035
NsbI	TGCGCA	1 cut(s)	617
NspI	RCATGY	3 cut(s)	82, 856, 892
PaeI	GCATGC	1 cut(s)	856
PdmI	GAANNNNTTC	3 cut(s)	161, 447, 676
PfeI	GAWTC	3 cut(s)	171, 283, 677
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	2 cut(s)	286, 1027
PfoI	TCCNGGA	2 cut(s)	205, 600
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
PpuMI	RGGWCCY	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	205, 600
PspGI	CCWGG	2 cut(s)	205, 600
PspN4I	GGNNCC	2 cut(s)	557, 1032
PspPI	GGNCC	4 cut(s)	51, 604, 692, 1054
PspPPI	RGGWCCY	1 cut(s)	604
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PstNI	CAGNNNCTG	2 cut(s)	286, 433
PsuI	RGATCY	3 cut(s)	430, 555, 663
PsyI	GACNNNGTC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	7 cut(s)	111, 333, 489, 756, 896, 962, 1064
Sau3AI	GATC	3 cut(s)	430, 555, 663
Sau96I	GGNCC	4 cut(s)	51, 604, 692, 1054
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	3 cut(s)	207, 602, 1058
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	3 cut(s)	613, 937, 1049
SfcI	CTRYAG	1 cut(s)	879
SinI	GGWCC	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	3 cut(s)	65, 308, 961
SmoI	CTYRAG	3 cut(s)	65, 308, 961
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	6 cut(s)	157, 186, 213, 270, 330, 402
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	3 cut(s)	48, 413, 1090
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	205, 600, 1056
TaaI	ACNGT	2 cut(s)	97, 880
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	2 cut(s)	496, 909
TasI	AATT	6 cut(s)	157, 186, 213, 270, 330, 402
TfiI	GAWTC	3 cut(s)	171, 283, 677
Tru1I	TTAA	7 cut(s)	111, 333, 489, 756, 896, 962, 1064
Tru9I	TTAA	7 cut(s)	111, 333, 489, 756, 896, 962, 1064
TscAI	CASTG	3 cut(s)	883, 1011, 1041
TspDTI	ATGAA	5 cut(s)	97, 516, 689, 794, 967
TspRI	CASTG	3 cut(s)	883, 1011, 1041
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	2 cut(s)	286, 1027
Vha464I	CTTAAG	1 cut(s)	961
VpaK11BI	GGWCC	1 cut(s)	604
VspI	ATTAAT	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	157, 213
XceI	RCATGY	3 cut(s)	82, 856, 892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmnI	GAANNNNTTC	3 cut(s)	161, 447, 676
XspI	CTAG	3 cut(s)	48, 413, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.