Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Reverse (-)

990673 .. 993669

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCATTGCTTTCCGAGTTAATAACTATCACAATAGTCTTGGTGACTCGGCCTTTCTCACTTTTGAAGCTCTTATGCTTGTTTGGCATAAAGACTACTTTTATTGTCATTCATGCATGGTTGGATTTGTTGAGGGCAGCAGTCTTCTTCCATGTGAACATATTCTGGAGAATCATGATATGGACATTGGCACTTATATCCCTGCCTGGGCGTGTTTTGACTGCCTTACAGAGGGAGAGGCAGCTGGAAAAACATTTACACGATATGCAAATTGAGTTGGAGAATCTAGAATGGGATAGAAAAGAACTTCAGGAGCATCTACTTACAGCCATTAAAGAACAAAGAATGATGGAGTTGATATTAGCAGAACTTGAAGAGGAACATGACAAGGCCATTGCCAAAATTGATCTGCTAGTGAGCAAGTTACACGATCTGAAAACTGAAAATCTGCGGCTAAAAGAAATTCAGGGCAAAGGATGGAACGACAAAGGTCGAGATCAAACAGGCAATGCCCAGAGTACAGCCATTGGGATCCCATCATGGAAATCCCGTTATGATGGAAGTGAATTCATCCGTCAAGACCTTCTGATGCACAAAGATACATGGGGGGACGAAAGCAAAACTAATTTGGAGTTGCTCAAAACCTTAAGAAATGAACCCGTATCCAGTGGACCCATACATCCTGTTATGCCTGAAATCAGCCTCAGAAATTTAGATATGAGTGAAGTTTTTTACCAGCGAAGGGGTATTGCAATCAAACAGAGTCTTTTCAGTGCAGTGTTATCACTTGTGGTTGGGATTATCGTTTGGCAAGCTGAAGACCCTTGCATGCCCCTTGTCGTGGCTCTCTTCTCCGTGGTTGGTATGTCACTCAAGAGCGTGGTTCAGTTTTTCTCGACCATAAGGAATAGACCTGCTACTGACGCCGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGAACACTTACCTACCCGACATTACCGAAGGCTGCGCATATGGTGGCTCCATTGGCATTAAATTTTGTCGACCGAGCGTTGAGCTGGCTTGGTTTCTCTTTTCCCCTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

40.73

Weight (kDa)

6.81

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	996
Acc36I	ACCTGC	1 cut(s)	922
AccI	GTMKAC	1 cut(s)	1029
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	2 cut(s)	526, 539
AcsI	RAATTY	4 cut(s)	462, 566, 709, 1021
AcuI	CTGAAG	2 cut(s)	293, 837
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	4 cut(s)	207, 231, 742, 841
AflII	CTTAAG	2 cut(s)	646, 937
AgsI	TTSAA	3 cut(s)	67, 374, 946
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	6 cut(s)	70, 244, 815, 942, 1044, 1070
AluI	AGCT	6 cut(s)	70, 244, 815, 942, 1044, 1070
AlwI	GGATC	2 cut(s)	526, 539
AoxI	GGCC	2 cut(s)	50, 390
ApeKI	GCWGC	3 cut(s)	137, 241, 992
ApoI	RAATTY	4 cut(s)	462, 566, 709, 1021
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	997
AspS9I	GGNCC	1 cut(s)	671
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	136, 825
BbvI	GCAGC	3 cut(s)	149, 253, 979
BccI	CCATC	4 cut(s)	343, 471, 544, 551
BceAI	ACGGC	1 cut(s)	911
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	673
BfaI	CTAG	3 cut(s)	287, 413, 1067
BfrI	CTTAAG	2 cut(s)	646, 937
BfuAI	ACCTGC	1 cut(s)	922
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	138, 242, 452, 993
BlsI	GCNGC	4 cut(s)	139, 243, 453, 994
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	3 cut(s)	533, 673, 1008
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	325, 579
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	2 cut(s)	136, 825
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	857
BsaHI	GRCGYC	1 cut(s)	924
BsaJI	CCNNGG	2 cut(s)	206, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 231, 742, 841
Bse1I	ACTGG	2 cut(s)	666, 953
Bse3DI	GCAATG	3 cut(s)	5, 393, 514
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	206, 855
BseGI	GGATG	3 cut(s)	482, 570, 679
BseLI	CCNNNNNNNGG	4 cut(s)	207, 231, 742, 841
BseMI	GCAATG	3 cut(s)	5, 393, 514
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	2 cut(s)	666, 953
BseXI	GCAGC	3 cut(s)	149, 253, 979
BsgI	GTGCAG	1 cut(s)	795
Bsh1285I	CGRYCG	1 cut(s)	1033
BshFI	GGCC	2 cut(s)	52, 392
BsiEI	CGRYCG	1 cut(s)	1033
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	4 cut(s)	207, 231, 742, 841
BsmFI	GGGAC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	52, 392
Bsp143I	GATC	4 cut(s)	406, 430, 496, 531
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	2 cut(s)	52, 392
BspCNI	CTCAG	1 cut(s)	717
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	533, 673, 1008
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	2 cut(s)	526, 539
BspTI	CTTAAG	2 cut(s)	646, 937
BsrDI	GCAATG	3 cut(s)	5, 393, 514
BsrI	ACTGG	2 cut(s)	666, 953
BssECI	CCNNGG	2 cut(s)	206, 855
BssMI	GATC	4 cut(s)	406, 430, 496, 531
BssNI	GRCGYC	1 cut(s)	924
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	2 cut(s)	369, 854
BstACI	GRCGYC	1 cut(s)	924
BstAFI	CTTAAG	2 cut(s)	646, 937
BstC8I	GCNNGC	3 cut(s)	813, 830, 1046
BstDEI	CTNAG	1 cut(s)	704
BstDSI	CCRYGG	1 cut(s)	855
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	482, 570, 679
BstHHI	GCGC	1 cut(s)	997
BstKTI	GATC	4 cut(s)	409, 433, 499, 534
BstMBI	GATC	4 cut(s)	406, 430, 496, 531
BstMCI	CGRYCG	1 cut(s)	1033
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 923, 1013
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	832
BstPAI	GACNNNNGTC	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	149, 253, 979
BstV2I	GAAGAC	2 cut(s)	136, 825
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	52, 392
BtgI	CCRYGG	1 cut(s)	855
BtsCI	GGATG	3 cut(s)	482, 570, 679
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	673, 778, 783
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	3 cut(s)	813, 830, 1046
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	997
Cfr13I	GGNCC	1 cut(s)	671
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	8 cut(s)	113, 117, 152, 175, 383, 540, 603, 829
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	1 cut(s)	704
DpnI	GATC	4 cut(s)	408, 432, 498, 533
DpnII	GATC	4 cut(s)	406, 430, 496, 531
Eam1104I	CTCTTC	2 cut(s)	369, 854
EarI	CTCTTC	2 cut(s)	369, 854
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	293, 837
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	118
FaeI	CATG	8 cut(s)	116, 120, 155, 178, 386, 543, 606, 832
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	8 cut(s)	112, 116, 151, 174, 382, 539, 602, 828
FauNDI	CATATG	1 cut(s)	999
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	4 cut(s)	138, 242, 452, 993
FokI	GGATG	3 cut(s)	489, 557, 666
Fsp4HI	GCNGC	4 cut(s)	138, 242, 452, 993
FspBI	CTAG	3 cut(s)	287, 413, 1067
FspI	TGCGCA	1 cut(s)	996
GlaI	GCGC	1 cut(s)	996
GluI	GCNGC	4 cut(s)	138, 242, 452, 993
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	52, 392
HgaI	GACGC	1 cut(s)	932
HhaI	GCGC	1 cut(s)	997
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	8 cut(s)	116, 120, 155, 178, 386, 543, 606, 832
Hin6I	GCGC	1 cut(s)	995
HinP1I	GCGC	1 cut(s)	995
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	4 cut(s)	46, 171, 283, 763
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	157, 671, 1030
Hpy188I	TCNGA	4 cut(s)	16, 435, 588, 707
Hpy188III	TCNNGA	8 cut(s)	166, 175, 287, 311, 494, 578, 874, 895
Hpy8I	GTNNAC	3 cut(s)	157, 671, 1030
HpyAV	CCTTC	3 cut(s)	593, 735, 982
HpyCH4V	TGCA	6 cut(s)	116, 268, 592, 752, 776, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 923, 1013
HpyF3I	CTNAG	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	8 cut(s)	116, 120, 155, 178, 386, 543, 606, 832
HspAI	GCGC	1 cut(s)	995
Kzo9I	GATC	4 cut(s)	406, 430, 496, 531
LmnI	GCTCC	2 cut(s)	313, 1012
Lsp1109I	GCAGC	3 cut(s)	149, 253, 979
LweI	GCATC	2 cut(s)	325, 579
MaeI	CTAG	3 cut(s)	287, 413, 1067
MaeIII	GTNAC	3 cut(s)	43, 423, 867
MalI	GATC	4 cut(s)	408, 432, 498, 533
MboI	GATC	4 cut(s)	406, 430, 496, 531
MboII	GAAGA	5 cut(s)	136, 139, 386, 830, 841
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	7 cut(s)	270, 402, 462, 566, 625, 709, 1021
MlyI	GAGTC	2 cut(s)	40, 772
MmeI	TCCRAC	2 cut(s)	102, 258
MnlI	CCTC	5 cut(s)	126, 225, 231, 370, 713
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	6 cut(s)	20, 333, 647, 938, 1019, 1072
MspA1I	CMGCKG	1 cut(s)	244
MspCI	CTTAAG	2 cut(s)	646, 937
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	84, 923, 1013
NdeI	CATATG	1 cut(s)	999
NdeII	GATC	4 cut(s)	406, 430, 496, 531
NlaIII	CATG	8 cut(s)	116, 120, 155, 178, 386, 543, 606, 832
NlaIV	GGNNCC	3 cut(s)	533, 673, 1008
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	43, 867
NsbI	TGCGCA	1 cut(s)	996
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	832
PaeI	GCATGC	1 cut(s)	832
PagI	TCATGA	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	171, 283
PkrI	GCNGC	4 cut(s)	139, 243, 453, 994
PleI	GAGTC	2 cut(s)	40, 771
PpsI	GAGTC	2 cut(s)	40, 771
PshAI	GACNNNNGTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	533, 673, 1008
PspPI	GGNCC	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	531
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	1028
SaqAI	TTAA	6 cut(s)	20, 333, 647, 938, 1019, 1072
SatI	GCNGC	4 cut(s)	138, 242, 452, 993
Sau3AI	GATC	4 cut(s)	406, 430, 496, 531
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	2 cut(s)	40, 772
ScrFI	CCNGG	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	325, 579
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	3 cut(s)	646, 872, 937
SmoI	CTYRAG	3 cut(s)	646, 872, 937
SphI	GCATGC	1 cut(s)	832
Sse9I	AATT	7 cut(s)	270, 402, 462, 566, 625, 709, 1021
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	3 cut(s)	287, 413, 1067
StyD4I	CCNGG	1 cut(s)	205
TaqI	TCGA	3 cut(s)	493, 896, 1029
TaqII	GACCGA	1 cut(s)	1047
TasI	AATT	7 cut(s)	270, 402, 462, 566, 625, 709, 1021
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	2 cut(s)	171, 283
Tru1I	TTAA	6 cut(s)	20, 333, 647, 938, 1019, 1072
Tru9I	TTAA	6 cut(s)	20, 333, 647, 938, 1019, 1072
TscAI	CASTG	3 cut(s)	673, 778, 783
TseFI	GTSAC	2 cut(s)	43, 867
TseI	GCWGC	3 cut(s)	137, 241, 992
Tsp45I	GTSAC	2 cut(s)	43, 867
TspDTI	ATGAA	4 cut(s)	101, 559, 669, 943
TspGWI	ACGGA	2 cut(s)	563, 844
TspRI	CASTG	3 cut(s)	673, 778, 783
Vha464I	CTTAAG	2 cut(s)	646, 937
VpaK11BI	GGWCC	1 cut(s)	671
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	4 cut(s)	462, 566, 709, 1021
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	832
XmiI	GTMKAC	1 cut(s)	1029
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	3 cut(s)	287, 413, 1067
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.