Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Reverse (-)

1606591 .. 1611227

Gene Structure 4637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G014600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATGTGATGGCATTGGTTTCTGAATTACTAACTAACATAATAATCTTAGTGACTAGGCCTTTTTCACTTTTCAAGCTGTTATGCTTGTTTGGCATAAAAACTACTTTTATTATCGTTTATACATGCATAGAGTTGATGATGGCATCAGTCTGCTTCCATGTGAACCTATTCTGGAGAATAACGATGTGGACATTTGCACTTATATCTCTGCCTGGGCGAGTTTTAACTGCCTTAGAGAGGGAGAGACAGCTGGAACGGCATTTACTTGATATGCAAATTGAGTTGGAGAATCTGGCATGGGATAGGAAAGAACTTCAGGAACATCTACAAACAGCCATTAAAGAACAAAAAATGATGGAGTTGATATTAGCAGAACTTGAAGAGGAGCATGACAAGGCCATTGCTAAAATTGAACTGCTAGCAAGCGAGTTACACGATCTGAAAACTGAAAATCTTCGGCTAAGAGAAATTCAGGGCAAAGGATATTGGAACAATAAAGGTAGAGATGAAACAGGCAATGTCAAGGACTTAGCCATTGCTGACTATGGCATTCCCTATGGGATCCCGTCATGGAAATCCCGTTATGATGGAAGCGGTATGATCCTCCAAGACCTTCTGATGCACAAAGATGCTTGGGGAGACGAGAGCAAAACTAAAACAGAGTTGCTCAAAATCTTAAGAAATGAATCAATATCTAGTGGGCCTATACATCCTGTTATGTCTGAAATCAACCTGAGACATTTAGATATGAGTGAAGTTTTGGACCAGCGAAGGGGTATTGCAATCAAACAGAGTCTTTTCAGTGCAGTGTTATCACTTTTGGTTGGAATAATTGTTTGGCAAGCTGAAGACCCTTGCATGCCCCTCGTTGTTGCTCTCTTCACCGTAGTTGGTATGTCACTGAAGAGTGTGGTTCAGTTTTTCTCCACCATAAACAACAGACCTGCTTCTGATGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGCACGCTTACCTACCCGACATTGCCGAAGGTAGCTCATATGGTGGCCATAGTGGCATTAAATTTTGTGGACCGAGCATTGAGCTTGCTTGGTTTTTCTTTTTTCCTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.85

Weight (kDa)

5.77

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	955
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	3 cut(s)	559, 572, 598
AcoI	YGGCCR	1 cut(s)	1038
AcsI	RAATTY	2 cut(s)	471, 1054
AcuI	CTGAAG	3 cut(s)	302, 870, 926
AfiI	CCNNNNNNNGG	2 cut(s)	240, 775
AflII	CTTAAG	2 cut(s)	679, 970
AgsI	TTSAA	4 cut(s)	76, 383, 416, 979
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	823, 855
AluBI	AGCT	7 cut(s)	79, 253, 848, 975, 1028, 1077, 1103
AluI	AGCT	7 cut(s)	79, 253, 848, 975, 1028, 1077, 1103
Alw26I	GTCTC	3 cut(s)	241, 636, 733
AlwI	GGATC	3 cut(s)	559, 572, 598
AoxI	GGCC	4 cut(s)	59, 399, 704, 1038
ApoI	RAATTY	2 cut(s)	471, 1054
Asp700I	GAANNNNTTC	2 cut(s)	170, 456
AspS9I	GGNCC	3 cut(s)	704, 766, 1063
AsuHPI	GGTGA	1 cut(s)	877
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	766, 1063
BalI	TGGCCA	1 cut(s)	1040
BamHI	GGATCC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	858
BccI	CCATC	4 cut(s)	4, 136, 352, 584
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	241, 636, 733
BfaI	CTAG	4 cut(s)	57, 422, 699, 1100
BfrI	CTTAAG	2 cut(s)	679, 970
BfuAI	ACCTGC	1 cut(s)	955
BglI	GCCNNNNNGGC	1 cut(s)	1046
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	766, 1063
BmgT120I	GGNCC	3 cut(s)	704, 766, 1063
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	4 cut(s)	155, 612, 622, 946
BmtI	GCTAGC	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	858
BpmI	CTGGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 775
Bse1I	ACTGG	1 cut(s)	986
Bse3DI	GCAATG	4 cut(s)	402, 526, 537, 1013
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	10, 712
BseLI	CCNNNNNNNGG	2 cut(s)	240, 775
BseMI	GCAATG	4 cut(s)	402, 526, 537, 1013
BseMII	CTCAG	1 cut(s)	728
BseNI	ACTGG	1 cut(s)	986
BseRI	GAGGAG	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	828
BshFI	GGCC	4 cut(s)	61, 401, 706, 1040
BslI	CCNNNNNNNGG	2 cut(s)	240, 775
BsmAI	GTCTC	3 cut(s)	241, 636, 733
BsmBI	CGTCTC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	4 cut(s)	61, 401, 706, 1040
Bsp143I	GATC	3 cut(s)	439, 564, 603
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	4 cut(s)	61, 401, 706, 1040
BspCNI	CTCAG	1 cut(s)	729
BspLI	GGNNCC	1 cut(s)	566
BspMI	ACCTGC	1 cut(s)	955
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	559, 572, 598
BspTI	CTTAAG	2 cut(s)	679, 970
BsrDI	GCAATG	4 cut(s)	402, 526, 537, 1013
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	439, 564, 603
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	889
Bst6I	CTCTTC	3 cut(s)	378, 887, 902
BstAFI	CTTAAG	2 cut(s)	679, 970
BstC8I	GCNNGC	6 cut(s)	423, 427, 846, 863, 998, 1079
BstDEI	CTNAG	5 cut(s)	49, 235, 464, 532, 737
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	10, 712
BstKTI	GATC	3 cut(s)	442, 567, 606
BstMAI	GTCTC	3 cut(s)	241, 636, 733
BstMBI	GATC	3 cut(s)	439, 564, 603
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 259, 956, 1046
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	2 cut(s)	129, 865
BstSCI	CCNGG	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuRI	GGCC	4 cut(s)	61, 401, 706, 1040
BtsCI	GGATG	2 cut(s)	10, 712
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	811, 816, 902
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	6 cut(s)	423, 427, 846, 863, 998, 1079
Cfr13I	GGNCC	3 cut(s)	704, 766, 1063
CviAII	CATG	6 cut(s)	126, 161, 300, 392, 573, 862
DdeI	CTNAG	5 cut(s)	49, 235, 464, 532, 737
DpnI	GATC	3 cut(s)	441, 566, 605
DpnII	GATC	3 cut(s)	439, 564, 603
EaeI	YGGCCR	1 cut(s)	1038
Eam1104I	CTCTTC	3 cut(s)	378, 887, 902
EarI	CTCTTC	3 cut(s)	378, 887, 902
Eco147I	AGGCCT	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	766, 1063
Eco57I	CTGAAG	3 cut(s)	302, 870, 926
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	6 cut(s)	129, 164, 303, 395, 576, 865
FatI	CATG	6 cut(s)	125, 160, 299, 391, 572, 861
FauNDI	CATATG	1 cut(s)	1032
FokI	GGATG	2 cut(s)	17, 699
FspBI	CTAG	4 cut(s)	57, 422, 699, 1100
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	4 cut(s)	61, 401, 706, 1040
Hin1II	CATG	6 cut(s)	129, 164, 303, 395, 576, 865
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	3 cut(s)	292, 689, 796
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	3 cut(s)	166, 192, 1063
Hpy188I	TCNGA	5 cut(s)	25, 444, 621, 727, 955
Hpy188III	TCNNGA	2 cut(s)	175, 320
Hpy8I	GTNNAC	3 cut(s)	166, 192, 1063
HpyAV	CCTTC	3 cut(s)	626, 768, 1015
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4V	TGCA	7 cut(s)	129, 200, 277, 625, 785, 809, 861
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 259, 956, 1046
HpyF3I	CTNAG	5 cut(s)	49, 235, 464, 532, 737
Hsp92II	CATG	6 cut(s)	129, 164, 303, 395, 576, 865
Kzo9I	GATC	3 cut(s)	439, 564, 603
LmnI	GCTCC	1 cut(s)	388
LweI	GCATC	4 cut(s)	155, 612, 622, 946
MaeI	CTAG	4 cut(s)	57, 422, 699, 1100
MaeIII	GTNAC	3 cut(s)	52, 432, 900
MalI	GATC	3 cut(s)	441, 566, 605
MboI	GATC	3 cut(s)	439, 564, 603
MboII	GAAGA	5 cut(s)	395, 449, 863, 874, 919
MflI	RGATCY	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	1040
MluCI	AATT	6 cut(s)	26, 279, 411, 471, 834, 1054
MluNI	TGGCCA	1 cut(s)	1040
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	2 cut(s)	267, 808
MnlI	CCTC	4 cut(s)	234, 379, 617, 878
Mox20I	TGGCCA	1 cut(s)	1040
Mph1103I	ATGCAT	1 cut(s)	131
MroXI	GAANNNNTTC	2 cut(s)	170, 456
MscI	TGGCCA	1 cut(s)	1040
MseI	TTAA	6 cut(s)	227, 342, 680, 971, 1052, 1105
MslI	CAYNNNNRTG	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	1040
MspA1I	CMGCKG	1 cut(s)	253
MspCI	CTTAAG	2 cut(s)	679, 970
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	93, 259, 956, 1046
NdeI	CATATG	1 cut(s)	1032
NdeII	GATC	3 cut(s)	439, 564, 603
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	6 cut(s)	129, 164, 303, 395, 576, 865
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	2 cut(s)	52, 900
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	2 cut(s)	129, 865
PaeI	GCATGC	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	61
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	2 cut(s)	170, 456
PfeI	GAWTC	2 cut(s)	292, 689
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	3 cut(s)	704, 766, 1063
PsrI	GAACNNNNNNTAC	2 cut(s)	249, 281
PsuI	RGATCY	1 cut(s)	564
PvuII	CAGCTG	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	6 cut(s)	227, 342, 680, 971, 1052, 1105
Sau3AI	GATC	3 cut(s)	439, 564, 603
Sau96I	GGNCC	3 cut(s)	704, 766, 1063
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	1 cut(s)	216
SfaNI	GCATC	4 cut(s)	155, 612, 622, 946
SinI	GGWCC	2 cut(s)	766, 1063
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	679, 970
SmoI	CTYRAG	2 cut(s)	679, 970
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	6 cut(s)	26, 279, 411, 471, 834, 1054
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	4 cut(s)	57, 422, 699, 1100
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	889
TaqII	GACCGA	1 cut(s)	1080
TasI	AATT	6 cut(s)	26, 279, 411, 471, 834, 1054
TfiI	GAWTC	2 cut(s)	292, 689
Tru1I	TTAA	6 cut(s)	227, 342, 680, 971, 1052, 1105
Tru9I	TTAA	6 cut(s)	227, 342, 680, 971, 1052, 1105
TscAI	CASTG	3 cut(s)	811, 816, 909
TseFI	GTSAC	2 cut(s)	52, 900
Tsp45I	GTSAC	2 cut(s)	52, 900
TspDTI	ATGAA	3 cut(s)	525, 702, 976
TspRI	CASTG	3 cut(s)	811, 816, 909
Vha464I	CTTAAG	2 cut(s)	679, 970
VpaK11BI	GGWCC	2 cut(s)	766, 1063
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	471, 1054
XceI	RCATGY	2 cut(s)	129, 865
XmnI	GAANNNNTTC	2 cut(s)	170, 456
XspI	CTAG	4 cut(s)	57, 422, 699, 1100
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.