Rh7BG279200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006368
Physical Location & Seq
Forward (+)
25935394 .. 25939764
4371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG279200.1

Sequence Viewer

Length: 969 bp
ATGGACAGAGTTGGTGAAGGCAGTAGTCAGCTTCCATGTGAATTTATTCTGGAGAATCCTCATATGGTCAATTGCTATTATATATCTTCCTGGACGAATTTTGACGGCCTTACAAAGGGAGAGCTGGAACTGCATTTACATGATATGCAAATCGAGCTCCAGAATCTGGCATGGGATAGGAAAGAGCTTGAGGAACATTTACAAAAAGCAATTAAAGAACAAAAAATGATGGAGCTGATATTAGGAGAGCTTGAAGAAGAACATGACAAGGTCATTGCCAAAATTGAAGTGCTAGTGGGCGAGTTACAGGATCTGAAAACTGAAAATCTTCGACTGAAAGAAGTTCAAGGAAAGAGCTATTGGAACTTTAAAGGCCGAGATGAAACAAGTGATGTCCATAATACAGCAATCGCTGACTATGGCATTCCCTACGGGATCCCATCATGGAAATCCAGTTATGATGGAAGTGGTATTGTCCTCCAGGACCTTCTAATGCGCAAAGATGCGTGGGGAGAAGAAAGTAAACCTAAAACCGAGTTGCAGATCTTACGAAATGATTCAAAGTACGTTGGGCCTGTTCATCCTATTATGCCTGAAACCAACACCAGAATTGTAGATATGGGTGAAGTTTTTAACCAACGAAGGGTTATTGCAATGAAACAGAGTCTATTTAGTGCAGTTTTATCGCTTTTGGTTGGAGTGATTATCTGGCAAGCTGAAGACCCTTGCATGCCCCTTGTCGTGGCTCTCTTCACTGTAGTTGGCATGTCATTAAAGAGTGTTGTCGAGTTTTTCTCAACCATAAAGAACAGACCTGCTTCGGATGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGCACACTTACCTACCCAACACTGCCGAGGGTTGCCCATATGGTGGCACCAGTGGCATCAAATCTTGTGGACCGGGCATTAAGCTGGCTTGGTTTCTCTTTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

36.52

Weight (kDa)

5.13

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 823
AccB1I GGYRCC 1 cut(s) 907
AccB7I CCANNNNNTGG 2 cut(s) 166, 904
AclWI GGATC 3 cut(s) 318, 430, 443
AcsI RAATTY 2 cut(s) 41, 97
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 5 cut(s) 115, 166, 643, 742, 904
AflII CTTAAG 1 cut(s) 838
AgsI TTSAA 5 cut(s) 254, 287, 347, 561, 847
AjnI CCWGG 2 cut(s) 89, 480
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 3 cut(s) 318, 430, 443
AlwNI CAGNNNCTG 2 cut(s) 166, 313
AoxI GGCC 3 cut(s) 106, 373, 572
ApoI RAATTY 2 cut(s) 41, 97
Asp700I GAANNNNTTC 3 cut(s) 45, 327, 556
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 3 cut(s) 484, 572, 931
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 2 cut(s) 26, 635
AvaII GGWCC 2 cut(s) 484, 931
BamHI GGATCC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 907
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 3 cut(s) 223, 448, 455
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 666, 700
BciT130I CCWGG 2 cut(s) 91, 482
BcnI CCSGG 1 cut(s) 935
BfaI CTAG 2 cut(s) 293, 967
BfmI CTRYAG 1 cut(s) 756
BfrI CTTAAG 1 cut(s) 838
BfuAI ACCTGC 1 cut(s) 823
BglII AGATCT 1 cut(s) 543
Bme1390I CCNGG 3 cut(s) 91, 482, 935
Bme18I GGWCC 2 cut(s) 484, 931
BmgT120I GGNCC 3 cut(s) 484, 572, 931
BmiI GGNNCC 2 cut(s) 437, 909
BmrFI CCNGG 3 cut(s) 91, 482, 935
BmsI GCATC 3 cut(s) 493, 814, 926
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 779, 811
BpmI CTGGAG 3 cut(s) 71, 143, 464
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 935
BsaJI CCNNGG 1 cut(s) 887
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 166, 643, 742, 904
Bse1I ACTGG 3 cut(s) 453, 854, 911
Bse3DI GCAATG 2 cut(s) 273, 660
BseBI CCWGG 2 cut(s) 91, 482
BseDI CCNNGG 1 cut(s) 887
BseGI GGATG 2 cut(s) 580, 829
BseLI CCNNNNNNNGG 5 cut(s) 115, 166, 643, 742, 904
BseMI GCAATG 2 cut(s) 273, 660
BseNI ACTGG 3 cut(s) 453, 854, 911
BsgI GTGCAG 1 cut(s) 696
BshFI GGCC 3 cut(s) 108, 375, 574
BshNI GGYRCC 1 cut(s) 907
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 934
BslI CCNNNNNNNGG 5 cut(s) 115, 166, 643, 742, 904
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 3 cut(s) 108, 375, 574
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 310, 435, 543
BspANI GGCC 3 cut(s) 108, 375, 574
BspLI GGNNCC 2 cut(s) 437, 909
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 3 cut(s) 318, 430, 443
BspT107I GGYRCC 1 cut(s) 907
BspTI CTTAAG 1 cut(s) 838
BsrDI GCAATG 2 cut(s) 273, 660
BsrI ACTGG 3 cut(s) 453, 854, 911
BssECI CCNNGG 1 cut(s) 887
BssMI GATC 3 cut(s) 310, 435, 543
Bst2UI CCWGG 2 cut(s) 91, 482
Bst4CI ACNGT 1 cut(s) 757
Bst6I CTCTTC 1 cut(s) 755
BstAFI CTTAAG 1 cut(s) 838
BstC8I GCNNGC 3 cut(s) 714, 731, 947
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 580, 829
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 3 cut(s) 313, 438, 546
BstMBI GATC 3 cut(s) 310, 435, 543
BstMWI GCNNNNNNNGC 4 cut(s) 130, 154, 824, 914
BstNI CCWGG 2 cut(s) 91, 482
BstNSI RCATGY 2 cut(s) 733, 769
BstSCI CCNGG 3 cut(s) 89, 480, 933
BstSFI CTRYAG 1 cut(s) 756
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 3 cut(s) 310, 435, 543
BstYI RGATCY 3 cut(s) 310, 435, 543
BsuRI GGCC 3 cut(s) 108, 375, 574
BtsCI GGATG 2 cut(s) 580, 829
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 3 cut(s) 753, 881, 918
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 3 cut(s) 714, 731, 947
CaiI CAGNNNCTG 2 cut(s) 166, 313
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 3 cut(s) 484, 572, 931
Csp6I GTAC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 909, 944
CviAII CATG 7 cut(s) 36, 140, 171, 263, 444, 730, 766
CviQI GTAC 1 cut(s) 565
DpnI GATC 3 cut(s) 312, 437, 545
DpnII GATC 3 cut(s) 310, 435, 543
DraI TTTAAA 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 484, 931
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 2 cut(s) 89, 480
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 7 cut(s) 39, 143, 174, 266, 447, 733, 769
FatI CATG 7 cut(s) 35, 139, 170, 262, 443, 729, 765
FauNDI CATATG 2 cut(s) 63, 900
FokI GGATG 2 cut(s) 567, 836
FriOI GRGCYC 1 cut(s) 159
FspBI CTAG 2 cut(s) 293, 967
FspI TGCGCA 1 cut(s) 497
GlaI GCGC 1 cut(s) 497
GsuI CTGGAG 3 cut(s) 71, 143, 464
HaeIII GGCC 3 cut(s) 108, 375, 574
HapII CCGG 1 cut(s) 934
HhaI GCGC 1 cut(s) 498
Hin1II CATG 7 cut(s) 39, 143, 174, 266, 447, 733, 769
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 4 cut(s) 55, 163, 557, 664
HpaII CCGG 1 cut(s) 934
HphI GGTGA 2 cut(s) 26, 635
Hpy166II GTNNAC 2 cut(s) 524, 931
Hpy188I TCNGA 2 cut(s) 315, 823
Hpy188III TCNNGA 2 cut(s) 50, 160
Hpy8I GTNNAC 2 cut(s) 524, 931
HpyAV CCTTC 3 cut(s) 11, 497, 636
HpyCH4III ACNGT 1 cut(s) 757
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 6 cut(s) 133, 148, 541, 653, 677, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 154, 824, 914
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 7 cut(s) 39, 143, 174, 266, 447, 733, 769
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 3 cut(s) 310, 435, 543
LmnI GCTCC 2 cut(s) 162, 232
LweI GCATC 3 cut(s) 493, 814, 926
MaeI CTAG 2 cut(s) 293, 967
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 303
MalI GATC 3 cut(s) 312, 437, 545
MboI GATC 3 cut(s) 310, 435, 543
MboII GAAGA 7 cut(s) 78, 266, 269, 320, 527, 731, 742
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 3 cut(s) 310, 435, 543
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 6 cut(s) 41, 70, 97, 210, 282, 609
MlyI GAGTC 1 cut(s) 673
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 4 cut(s) 69, 184, 488, 882
MroXI GAANNNNTTC 3 cut(s) 45, 327, 556
MseI TTAA 6 cut(s) 213, 369, 633, 773, 839, 941
MslI CAYNNNNRTG 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 1 cut(s) 934
MspR9I CCNGG 3 cut(s) 91, 482, 935
MunI CAATTG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 2 cut(s) 91, 482
MwoI GCNNNNNNNGC 4 cut(s) 130, 154, 824, 914
NciI CCSGG 1 cut(s) 935
NdeI CATATG 2 cut(s) 63, 900
NdeII GATC 3 cut(s) 310, 435, 543
NlaIII CATG 7 cut(s) 39, 143, 174, 266, 447, 733, 769
NlaIV GGNNCC 2 cut(s) 437, 909
NmeAIII GCCGAG 2 cut(s) 401, 912
NsbI TGCGCA 1 cut(s) 497
NspI RCATGY 2 cut(s) 733, 769
PaeI GCATGC 1 cut(s) 733
PctI GAATGC 1 cut(s) 423
PdmI GAANNNNTTC 3 cut(s) 45, 327, 556
PfeI GAWTC 3 cut(s) 55, 163, 557
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 2 cut(s) 166, 904
PfoI TCCNGGA 2 cut(s) 89, 480
PleI GAGTC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 672
PpuMI RGGWCCY 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 2 cut(s) 89, 480
PspGI CCWGG 2 cut(s) 89, 480
PspN4I GGNNCC 2 cut(s) 437, 909
PspPI GGNCC 3 cut(s) 484, 572, 931
PspPPI RGGWCCY 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 120, 152
PstNI CAGNNNCTG 2 cut(s) 166, 313
PsuI RGATCY 3 cut(s) 310, 435, 543
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 6 cut(s) 213, 369, 633, 773, 839, 941
Sau3AI GATC 3 cut(s) 310, 435, 543
Sau96I GGNCC 3 cut(s) 484, 572, 931
SchI GAGTC 1 cut(s) 673
ScrFI CCNGG 3 cut(s) 91, 482, 935
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 3 cut(s) 493, 814, 926
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 2 cut(s) 484, 931
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 188, 838
SmoI CTYRAG 2 cut(s) 188, 838
SphI GCATGC 1 cut(s) 733
Sse9I AATT 6 cut(s) 41, 70, 97, 210, 282, 609
SspMI CTAG 2 cut(s) 293, 967
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 89, 480, 933
TaaI ACNGT 1 cut(s) 757
TaiI ACGT 1 cut(s) 570
TaqI TCGA 3 cut(s) 153, 331, 786
TasI AATT 6 cut(s) 41, 70, 97, 210, 282, 609
TfiI GAWTC 3 cut(s) 55, 163, 557
Tru1I TTAA 6 cut(s) 213, 369, 633, 773, 839, 941
Tru9I TTAA 6 cut(s) 213, 369, 633, 773, 839, 941
TscAI CASTG 3 cut(s) 760, 888, 918
TspDTI ATGAA 4 cut(s) 396, 569, 671, 844
TspRI CASTG 3 cut(s) 760, 888, 918
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 2 cut(s) 166, 904
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 484, 931
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 2 cut(s) 41, 97
XceI RCATGY 2 cut(s) 733, 769
XmnI GAANNNNTTC 3 cut(s) 45, 327, 556
XspI CTAG 2 cut(s) 293, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.