Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Forward (+)

32623771 .. 32628010

Gene Structure 4240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCATTGATTTCTGAGTTATTAACTACCACAATAATCTTGGCTACTAGGCCCTTCTCACTTCTCAAGCTTTTGTGCATGTTTGGAGTAAAAACTCTTTTCCTTTTCATTAATCTATGGACAGAGTTGGTGAAGGCAGTAGTCAGCTTCCATGTGAATTTATTCTGGAGAATCCTCATATGGTCAATTGCTATTATATATCTTCCTGGACGAATTTTGACGGCCTTACAAAGGGAGAGACATCTGGAACTGCATTTACATGATATGCAAATCGAGCTCCAGAATCTGGCATGGGATAGGAAAGAGCTTGAGGAACATCTACAAAAAGCAATTAAAGAACAAAAAATAATGGAGCTGATATTAGCAGAGCTTGAAGAAGAACATGACAAGGTCATTGCCAAAATTGAAGTGCTAGTGGGCGAGTTACAGGATCTGAAAACTGAAAATCTTCGGCTGAAAGAAGTTCAAGGAAAGAGCTATTGGAACTTTAAAGGTCGAGATGAAACAAGTGATGTCCATAATACAGCAATCGCTGACTATGGCATTCCCTACGGGATCCCATCATGGAAATCCAGTTATGATGGAAGTGGTATTGTCCTCCAGGACCTTCTAATGCGCAAAGATGCGTGGGGAGAAGAAAGTAAACCTAAAACCGAGTTGCAGATCTTACGAAATGATTCAAAGTACGTTGGGCCTGTTCATCCTATTATGCCTAAAACCAACTCCAGAATTGTAGATATGGGTGAAGTTTTTAACCAACGAAGGGTTATTGCAATGAAACAGAGTCTATTTAGTGCAGTTTTATCGCTTTTGGTTGGAGTGATTATCTGGCAAGCTGAAGACCCTTGCATGCCCCTTGTCGTGGCTCTCTTCACTGTTGTTGGCATGTCATTAAAGAGTGTTGTCGAGTTTTTCTCAACCATAAAGAACAGACCTGCTTCGGATGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGCACACTTACCTACCCAACACTGCCGAGGGTTGCCCATATGGTGGCGCACCAGTGGCATCAAATCTTGTGGACCGGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.65

Weight (kDa)

6.65

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	943
AccB7I	CCANNNNNTGG	2 cut(s)	286, 1024
AclWI	GGATC	3 cut(s)	438, 550, 563
AcsI	RAATTY	2 cut(s)	157, 213
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	5 cut(s)	231, 286, 763, 862, 1024
AflII	CTTAAG	1 cut(s)	958
AgsI	TTSAA	5 cut(s)	374, 407, 467, 681, 967
AjnI	CCWGG	2 cut(s)	205, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AluBI	AGCT	9 cut(s)	70, 147, 277, 307, 355, 370, 477, 836, 963
AluI	AGCT	9 cut(s)	70, 147, 277, 307, 355, 370, 477, 836, 963
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	438, 550, 563
AlwNI	CAGNNNCTG	2 cut(s)	286, 433
AoxI	GGCC	3 cut(s)	50, 222, 692
ApoI	RAATTY	2 cut(s)	157, 213
AseI	ATTAAT	1 cut(s)	111
Asp700I	GAANNNNTTC	3 cut(s)	161, 447, 676
AspLEI	GCGC	2 cut(s)	618, 1030
AspS9I	GGNCC	4 cut(s)	51, 604, 692, 1053
AsuC2I	CCSGG	1 cut(s)	1057
AsuHPI	GGTGA	2 cut(s)	142, 755
AvaII	GGWCC	2 cut(s)	604, 1053
BamHI	GGATCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	2 cut(s)	568, 575
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	786, 820
BciT130I	CCWGG	2 cut(s)	207, 602
BcnI	CCSGG	1 cut(s)	1057
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	48, 413
BfrI	CTTAAG	1 cut(s)	958
BfuAI	ACCTGC	1 cut(s)	943
BglII	AGATCT	1 cut(s)	663
Bme1390I	CCNGG	3 cut(s)	207, 602, 1057
Bme18I	GGWCC	2 cut(s)	604, 1053
BmgT120I	GGNCC	4 cut(s)	51, 604, 692, 1053
BmiI	GGNNCC	1 cut(s)	557
BmrFI	CCNGG	3 cut(s)	207, 602, 1057
BmsI	GCATC	3 cut(s)	613, 934, 1048
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpmI	CTGGAG	4 cut(s)	187, 263, 584, 709
BpuEI	CTTGAG	2 cut(s)	50, 329
BpuMI	CCSGG	1 cut(s)	1057
BsaJI	CCNNGG	1 cut(s)	1007
Bsc4I	CCNNNNNNNGG	5 cut(s)	231, 286, 763, 862, 1024
Bse1I	ACTGG	3 cut(s)	573, 974, 1033
Bse3DI	GCAATG	2 cut(s)	393, 780
BseBI	CCWGG	2 cut(s)	207, 602
BseDI	CCNNGG	1 cut(s)	1007
BseGI	GGATG	2 cut(s)	700, 949
BseLI	CCNNNNNNNGG	5 cut(s)	231, 286, 763, 862, 1024
BseMI	GCAATG	2 cut(s)	393, 780
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	573, 974, 1033
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	52, 224, 694
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	1056
BslI	CCNNNNNNNGG	5 cut(s)	231, 286, 763, 862, 1024
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	3 cut(s)	52, 224, 694
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	430, 555, 663
BspANI	GGCC	3 cut(s)	52, 224, 694
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	557
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	3 cut(s)	438, 550, 563
BspTI	CTTAAG	1 cut(s)	958
BsrDI	GCAATG	2 cut(s)	393, 780
BsrI	ACTGG	3 cut(s)	573, 974, 1033
BssECI	CCNNGG	1 cut(s)	1007
BssMI	GATC	3 cut(s)	430, 555, 663
Bst2UI	CCWGG	2 cut(s)	207, 602
Bst4CI	ACNGT	1 cut(s)	877
Bst6I	CTCTTC	1 cut(s)	875
BstAFI	CTTAAG	1 cut(s)	958
BstC8I	GCNNGC	2 cut(s)	834, 851
BstDEI	CTNAG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	700, 949
BstHHI	GCGC	2 cut(s)	618, 1030
BstKTI	GATC	3 cut(s)	433, 558, 666
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	430, 555, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 944, 1036
BstNI	CCWGG	2 cut(s)	207, 602
BstNSI	RCATGY	3 cut(s)	82, 853, 889
BstSCI	CCNGG	3 cut(s)	205, 600, 1055
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	3 cut(s)	430, 555, 663
BstYI	RGATCY	3 cut(s)	430, 555, 663
BsuRI	GGCC	3 cut(s)	52, 224, 694
BtsCI	GGATG	2 cut(s)	700, 949
BtsI	GCAGTG	1 cut(s)	1001
BtsIMutI	CAGTG	3 cut(s)	873, 1001, 1040
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	834, 851
CaiI	CAGNNNCTG	2 cut(s)	286, 433
CfoI	GCGC	2 cut(s)	618, 1030
Cfr13I	GGNCC	4 cut(s)	51, 604, 692, 1053
Csp6I	GTAC	1 cut(s)	685
CspCI	CAANNNNNGTGG	1 cut(s)	1031
CviAII	CATG	8 cut(s)	79, 152, 260, 291, 383, 564, 850, 886
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	432, 557, 665
DpnII	GATC	3 cut(s)	430, 555, 663
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	875
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	604, 1053
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	51, 604
EcoRII	CCWGG	2 cut(s)	205, 600
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 853, 889
FatI	CATG	8 cut(s)	78, 151, 259, 290, 382, 563, 849, 885
FauNDI	CATATG	2 cut(s)	179, 1020
FokI	GGATG	2 cut(s)	687, 956
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	48, 413
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	2 cut(s)	617, 1029
GsuI	CTGGAG	4 cut(s)	187, 263, 584, 709
HaeIII	GGCC	3 cut(s)	52, 224, 694
HapII	CCGG	1 cut(s)	1056
HhaI	GCGC	2 cut(s)	618, 1030
Hin1II	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 853, 889
Hin6I	GCGC	2 cut(s)	616, 1028
HinP1I	GCGC	2 cut(s)	616, 1028
HindIII	AAGCTT	2 cut(s)	68, 961
HinfI	GANTC	4 cut(s)	171, 283, 677, 784
HpaII	CCGG	1 cut(s)	1056
HphI	GGTGA	2 cut(s)	142, 755
Hpy166II	GTNNAC	2 cut(s)	644, 1053
Hpy188I	TCNGA	3 cut(s)	16, 435, 943
Hpy188III	TCNNGA	5 cut(s)	166, 245, 280, 497, 726
Hpy8I	GTNNAC	2 cut(s)	644, 1053
HpyAV	CCTTC	4 cut(s)	64, 127, 617, 756
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	7 cut(s)	78, 253, 268, 661, 773, 797, 849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 944, 1036
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 853, 889
HspAI	GCGC	2 cut(s)	616, 1028
Kzo9I	GATC	3 cut(s)	430, 555, 663
LmnI	GCTCC	2 cut(s)	282, 352
LweI	GCATC	3 cut(s)	613, 934, 1048
MaeI	CTAG	2 cut(s)	48, 413
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	3 cut(s)	432, 557, 665
MboI	GATC	3 cut(s)	430, 555, 663
MboII	GAAGA	7 cut(s)	194, 386, 389, 440, 647, 851, 862
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	3 cut(s)	430, 555, 663
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	6 cut(s)	157, 186, 213, 330, 402, 729
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	4 cut(s)	185, 304, 608, 1002
MroXI	GAANNNNTTC	3 cut(s)	161, 447, 676
MseI	TTAA	8 cut(s)	23, 111, 333, 489, 753, 893, 959, 1063
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	958
MspI	CCGG	1 cut(s)	1056
MspR9I	CCNGG	3 cut(s)	207, 602, 1057
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	207, 602
MwoI	GCNNNNNNNGC	3 cut(s)	274, 944, 1036
NciI	CCSGG	1 cut(s)	1057
NdeI	CATATG	2 cut(s)	179, 1020
NdeII	GATC	3 cut(s)	430, 555, 663
NlaIII	CATG	8 cut(s)	82, 155, 263, 294, 386, 567, 853, 889
NlaIV	GGNNCC	1 cut(s)	557
NmeAIII	GCCGAG	1 cut(s)	1032
NsbI	TGCGCA	1 cut(s)	617
NspI	RCATGY	3 cut(s)	82, 853, 889
PaeI	GCATGC	1 cut(s)	853
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	3 cut(s)	161, 447, 676
PfeI	GAWTC	3 cut(s)	171, 283, 677
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	2 cut(s)	286, 1024
PfoI	TCCNGGA	2 cut(s)	205, 600
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	205, 600
PspGI	CCWGG	2 cut(s)	205, 600
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	4 cut(s)	51, 604, 692, 1053
PspPPI	RGGWCCY	1 cut(s)	604
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PstNI	CAGNNNCTG	2 cut(s)	286, 433
PsuI	RGATCY	3 cut(s)	430, 555, 663
PsyI	GACNNNGTC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	8 cut(s)	23, 111, 333, 489, 753, 893, 959, 1063
Sau3AI	GATC	3 cut(s)	430, 555, 663
Sau96I	GGNCC	4 cut(s)	51, 604, 692, 1053
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	3 cut(s)	207, 602, 1057
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	3 cut(s)	613, 934, 1048
SinI	GGWCC	2 cut(s)	604, 1053
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	3 cut(s)	65, 308, 958
SmoI	CTYRAG	3 cut(s)	65, 308, 958
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	6 cut(s)	157, 186, 213, 330, 402, 729
SspMI	CTAG	2 cut(s)	48, 413
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	205, 600, 1055
TaaI	ACNGT	1 cut(s)	877
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	3 cut(s)	273, 496, 906
TasI	AATT	6 cut(s)	157, 186, 213, 330, 402, 729
TfiI	GAWTC	3 cut(s)	171, 283, 677
Tru1I	TTAA	8 cut(s)	23, 111, 333, 489, 753, 893, 959, 1063
Tru9I	TTAA	8 cut(s)	23, 111, 333, 489, 753, 893, 959, 1063
TscAI	CASTG	3 cut(s)	880, 1008, 1040
TspDTI	ATGAA	5 cut(s)	97, 516, 689, 791, 964
TspRI	CASTG	3 cut(s)	880, 1008, 1040
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	2 cut(s)	286, 1024
Vha464I	CTTAAG	1 cut(s)	958
VpaK11BI	GGWCC	2 cut(s)	604, 1053
VspI	ATTAAT	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	157, 213
XceI	RCATGY	3 cut(s)	82, 853, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmnI	GAANNNNTTC	3 cut(s)	161, 447, 676
XspI	CTAG	2 cut(s)	48, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.