Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Forward (+)

30903253 .. 30907555

Gene Structure 4303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG287400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCATTGATTTCTGAGTTATTAACTACCACAATAATCTTGGCTACTAGGCCCTTCTCACTTCTCAAGCTTTTGTGCATGTTTGGAGTAAAAACTCTTTTCCTTTTCATTAATCTATGGACAGAGTTGGTGAAGGCAGTAGTCAGCTTCCATGTGAATTTATTCTGGAGAATCCTCATATGGTCAATTGCTATTATATATCTTCCTGGACGAATTTTGACGGCCTTACAAAGGGAGAGACATCTGGAACTGCATTTACATGATATGCAAATCGAGCTCCAGAATCTGGCATTGGATAGGAAAGAGCTTGAGGAACATCTACAAAAAGCAATTAAAGAACAAAAAATAATGGAGCTGATATTAGCAGAGCTTGAAGAAGAACATGACAAGGTCATTGCCAAAATTGAAGTGCTAGTGGGCGAGTTACAGGATCTGAAAACTGAAAATCTTCGGCTGAAAGATGTTCAAGGAAAGAGCTATTGGAACTTTAAAGGTCGAGATGAAACAAGTGATCATGTCCATAATACAGCAATCGCTGACTATGGCATTCCCTATGGGATCCCATCATGGAAATCCAGTTATGATGGAAGTGGTATTGTCCTCCAGGACCTTCTAATGCGCAAAGATGCGTGGGGAGAAGAAAGTAAACCTAAAACCGAGTTGCAGATCTTACGAAATGATTCAAAGTACGTTGGGCCTGTTCATCCTATTATGCCTGAAACCAACTCCAGAATTGTAGATATGGGTGAAGTTTTTAACCAACGAAGGGTTATTGCAATGAAACAGAGTCTATTTAGTGCAGTTTTATCGCTTTTGGTTGGAGTGATTATCTGGCAAGCTGAAGACCCTTGCATGCCCCTTGTCGTGGCTCTCTTCACTGTAGTTGGCATGTCATTAAAGAGTGTTGTCGAGTTTTTCTCAACCATAAAGAACAGACCTGCTTCGGATGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGCACACTTACCTACCCAACACTGCCGAGGGTTGCCCATATGGTGGCGCACCAGTGGCATCAAATCTTGTGGACCGGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.7

Weight (kDa)

6.36

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	946
AccB7I	CCANNNNNTGG	2 cut(s)	286, 1027
AclWI	GGATC	3 cut(s)	438, 553, 566
AcsI	RAATTY	2 cut(s)	157, 213
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
AflII	CTTAAG	1 cut(s)	961
AgsI	TTSAA	5 cut(s)	374, 407, 467, 684, 970
AjnI	CCWGG	2 cut(s)	205, 603
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 463, 495
AluBI	AGCT	9 cut(s)	70, 147, 277, 307, 355, 370, 477, 839, 966
AluI	AGCT	9 cut(s)	70, 147, 277, 307, 355, 370, 477, 839, 966
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	438, 553, 566
AlwNI	CAGNNNCTG	2 cut(s)	286, 433
AoxI	GGCC	3 cut(s)	50, 222, 695
ApoI	RAATTY	2 cut(s)	157, 213
AseI	ATTAAT	1 cut(s)	111
Asp700I	GAANNNNTTC	3 cut(s)	161, 447, 679
AspLEI	GCGC	2 cut(s)	621, 1033
AspS9I	GGNCC	4 cut(s)	51, 607, 695, 1056
AsuC2I	CCSGG	1 cut(s)	1060
AsuHPI	GGTGA	2 cut(s)	142, 758
AvaII	GGWCC	2 cut(s)	607, 1056
BamHI	GGATCC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	2 cut(s)	571, 578
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciT130I	CCWGG	2 cut(s)	207, 605
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	1060
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	48, 413
BfmI	CTRYAG	1 cut(s)	879
BfrI	CTTAAG	1 cut(s)	961
BfuAI	ACCTGC	1 cut(s)	946
BglII	AGATCT	1 cut(s)	666
Bme1390I	CCNGG	3 cut(s)	207, 605, 1060
Bme18I	GGWCC	2 cut(s)	607, 1056
BmgT120I	GGNCC	4 cut(s)	51, 607, 695, 1056
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	3 cut(s)	207, 605, 1060
BmsI	GCATC	3 cut(s)	616, 937, 1051
BpiI	GAAGAC	1 cut(s)	849
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
BpmI	CTGGAG	4 cut(s)	187, 263, 587, 712
BpuEI	CTTGAG	2 cut(s)	50, 329
BpuMI	CCSGG	1 cut(s)	1060
BsaJI	CCNNGG	1 cut(s)	1010
Bsc4I	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
Bse1I	ACTGG	3 cut(s)	576, 977, 1036
Bse3DI	GCAATG	2 cut(s)	393, 783
BseBI	CCWGG	2 cut(s)	207, 605
BseDI	CCNNGG	1 cut(s)	1010
BseGI	GGATG	2 cut(s)	703, 952
BseLI	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
BseMI	GCAATG	2 cut(s)	393, 783
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	576, 977, 1036
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	3 cut(s)	52, 224, 697
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	1059
BslI	CCNNNNNNNGG	5 cut(s)	231, 286, 766, 865, 1027
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	52, 224, 697
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	430, 511, 558, 666
BspANI	GGCC	3 cut(s)	52, 224, 697
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	560
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	3 cut(s)	438, 553, 566
BspTI	CTTAAG	1 cut(s)	961
BsrDI	GCAATG	2 cut(s)	393, 783
BsrI	ACTGG	3 cut(s)	576, 977, 1036
BssECI	CCNNGG	1 cut(s)	1010
BssMI	GATC	4 cut(s)	430, 511, 558, 666
Bst2UI	CCWGG	2 cut(s)	207, 605
Bst4CI	ACNGT	1 cut(s)	880
Bst6I	CTCTTC	1 cut(s)	878
BstAFI	CTTAAG	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	837, 854
BstDEI	CTNAG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	703, 952
BstHHI	GCGC	2 cut(s)	621, 1033
BstKTI	GATC	4 cut(s)	433, 514, 561, 669
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	430, 511, 558, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 947, 1039
BstNI	CCWGG	2 cut(s)	207, 605
BstNSI	RCATGY	3 cut(s)	82, 856, 892
BstSCI	CCNGG	3 cut(s)	205, 603, 1058
BstSFI	CTRYAG	1 cut(s)	879
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	3 cut(s)	430, 558, 666
BstYI	RGATCY	3 cut(s)	430, 558, 666
BsuRI	GGCC	3 cut(s)	52, 224, 697
BtsCI	GGATG	2 cut(s)	703, 952
BtsI	GCAGTG	1 cut(s)	1004
BtsIMutI	CAGTG	3 cut(s)	876, 1004, 1043
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	837, 854
CaiI	CAGNNNCTG	2 cut(s)	286, 433
CfoI	GCGC	2 cut(s)	621, 1033
Cfr13I	GGNCC	4 cut(s)	51, 607, 695, 1056
Csp6I	GTAC	1 cut(s)	688
CspCI	CAANNNNNGTGG	1 cut(s)	1034
CviAII	CATG	8 cut(s)	79, 152, 260, 383, 515, 567, 853, 889
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	4 cut(s)	432, 513, 560, 668
DpnII	GATC	4 cut(s)	430, 511, 558, 666
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	607, 1056
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	51, 607
EcoRII	CCWGG	2 cut(s)	205, 603
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	8 cut(s)	82, 155, 263, 386, 518, 570, 856, 892
FatI	CATG	8 cut(s)	78, 151, 259, 382, 514, 566, 852, 888
FauNDI	CATATG	2 cut(s)	179, 1023
FbaI	TGATCA	1 cut(s)	511
FokI	GGATG	2 cut(s)	690, 959
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	48, 413
FspI	TGCGCA	1 cut(s)	620
GlaI	GCGC	2 cut(s)	620, 1032
GsuI	CTGGAG	4 cut(s)	187, 263, 587, 712
HaeIII	GGCC	3 cut(s)	52, 224, 697
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	2 cut(s)	621, 1033
Hin1II	CATG	8 cut(s)	82, 155, 263, 386, 518, 570, 856, 892
Hin6I	GCGC	2 cut(s)	619, 1031
HinP1I	GCGC	2 cut(s)	619, 1031
HindIII	AAGCTT	2 cut(s)	68, 964
HinfI	GANTC	4 cut(s)	171, 283, 680, 787
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	142, 758
Hpy166II	GTNNAC	2 cut(s)	647, 1056
Hpy188I	TCNGA	3 cut(s)	16, 435, 946
Hpy188III	TCNNGA	5 cut(s)	166, 245, 280, 497, 729
Hpy8I	GTNNAC	2 cut(s)	647, 1056
HpyAV	CCTTC	4 cut(s)	64, 127, 620, 759
HpyCH4III	ACNGT	1 cut(s)	880
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	7 cut(s)	78, 253, 268, 664, 776, 800, 852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 947, 1039
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	8 cut(s)	82, 155, 263, 386, 518, 570, 856, 892
HspAI	GCGC	2 cut(s)	619, 1031
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	430, 511, 558, 666
LmnI	GCTCC	2 cut(s)	282, 352
LweI	GCATC	3 cut(s)	616, 937, 1051
MaeI	CTAG	2 cut(s)	48, 413
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	4 cut(s)	432, 513, 560, 668
MboI	GATC	4 cut(s)	430, 511, 558, 666
MboII	GAAGA	7 cut(s)	194, 386, 389, 440, 650, 854, 865
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	3 cut(s)	430, 558, 666
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	6 cut(s)	157, 186, 213, 330, 402, 732
MlyI	GAGTC	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	799
MnlI	CCTC	4 cut(s)	185, 304, 611, 1005
MroXI	GAANNNNTTC	3 cut(s)	161, 447, 679
MseI	TTAA	8 cut(s)	23, 111, 333, 489, 756, 896, 962, 1066
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	961
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	3 cut(s)	207, 605, 1060
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	207, 605
MwoI	GCNNNNNNNGC	3 cut(s)	274, 947, 1039
NciI	CCSGG	1 cut(s)	1060
NdeI	CATATG	2 cut(s)	179, 1023
NdeII	GATC	4 cut(s)	430, 511, 558, 666
NlaIII	CATG	8 cut(s)	82, 155, 263, 386, 518, 570, 856, 892
NlaIV	GGNNCC	1 cut(s)	560
NmeAIII	GCCGAG	1 cut(s)	1035
NsbI	TGCGCA	1 cut(s)	620
NspI	RCATGY	3 cut(s)	82, 856, 892
PaeI	GCATGC	1 cut(s)	856
PctI	GAATGC	1 cut(s)	546
PdmI	GAANNNNTTC	3 cut(s)	161, 447, 679
PfeI	GAWTC	3 cut(s)	171, 283, 680
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	2 cut(s)	286, 1027
PfoI	TCCNGGA	2 cut(s)	205, 603
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
PpuMI	RGGWCCY	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	205, 603
PspGI	CCWGG	2 cut(s)	205, 603
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	4 cut(s)	51, 607, 695, 1056
PspPPI	RGGWCCY	1 cut(s)	607
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PstNI	CAGNNNCTG	2 cut(s)	286, 433
PsuI	RGATCY	3 cut(s)	430, 558, 666
PsyI	GACNNNGTC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	8 cut(s)	23, 111, 333, 489, 756, 896, 962, 1066
Sau3AI	GATC	4 cut(s)	430, 511, 558, 666
Sau96I	GGNCC	4 cut(s)	51, 607, 695, 1056
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	3 cut(s)	207, 605, 1060
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	3 cut(s)	616, 937, 1051
SfcI	CTRYAG	1 cut(s)	879
SinI	GGWCC	2 cut(s)	607, 1056
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	3 cut(s)	65, 308, 961
SmoI	CTYRAG	3 cut(s)	65, 308, 961
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	6 cut(s)	157, 186, 213, 330, 402, 732
SspMI	CTAG	2 cut(s)	48, 413
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	205, 603, 1058
TaaI	ACNGT	1 cut(s)	880
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	3 cut(s)	273, 496, 909
TasI	AATT	6 cut(s)	157, 186, 213, 330, 402, 732
TfiI	GAWTC	3 cut(s)	171, 283, 680
Tru1I	TTAA	8 cut(s)	23, 111, 333, 489, 756, 896, 962, 1066
Tru9I	TTAA	8 cut(s)	23, 111, 333, 489, 756, 896, 962, 1066
TscAI	CASTG	3 cut(s)	883, 1011, 1043
TspDTI	ATGAA	5 cut(s)	97, 516, 692, 794, 967
TspRI	CASTG	3 cut(s)	883, 1011, 1043
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	2 cut(s)	286, 1027
Vha464I	CTTAAG	1 cut(s)	961
VpaK11BI	GGWCC	2 cut(s)	607, 1056
VspI	ATTAAT	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	157, 213
XceI	RCATGY	3 cut(s)	82, 856, 892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmnI	GAANNNNTTC	3 cut(s)	161, 447, 679
XspI	CTAG	2 cut(s)	48, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.