Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006368

Physical Location & Seq

Genomic Coordinates Reverse (-)

38192166 .. 38194814

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACCTTGGAGTTGGTGAAGGCAATAGTCAGCTTCCATGTGAATTTATTCTGGAGAATCATCATATGGTCAATTGCTATTATATCTCTTCCTGGACGAATTTTGACGGCCTTACAAAGGGAAAGACATCTGGGACTGCACTTGCATCATATGCAAATCGAGCTCGAGAATCTGGCATGGGATAGGAAAGAGCTTGAGGAACATCTACAAAAAGCAATTAAAGAACAAAAAGTGATGGAGTTGATATTAGCAGAGCTTGAAGAAGAACATGACAAGGTCATTGCCAAAATTGAAGTGCTGGTGGGCGAGTTACAGGATCTGAAAACTGAAAATCTTCGGCTGAAAGAAGTTCAAGGAAAGAGCTATTGGAACTTTAAAGGTCGAGATGAAACAAGTGATGTCCATAATACAGCAATCGCCGACTATGGCATTCCCTACGGGATCCCATCATGGAAATCCAGTTATGATGGAAGTGGTATTGTCCTCCAGGACCTTCTAATGCGCAAAGATGCGTGGGGAGAAGAAAGTAAACCTAAAACCGAGTTGCAGATCTTACGAAATGATTCAAAGTACGTTGGGCCTGTTCATCCTATTATGCCTGAAACCAACACCAGAATTGTAGATATGGGTGAAGTTTTTAACCAACGAAGGGTTATTGCAATGAAACAGAGTCTATTTAGTGCAGTTTTATCGCTTTTGGTTGGAGTGATTATCTGGCAAGCTGAAGACCCTTGCATGCCCCTTGTCGTGGCTCTCTTCACTGTAGTTGGCATGTCATTAAAGAGTGTCGTTGGGTTTTTCTCAACCGTAAAGAATAGACCTGCTTCGGATGCTGTTGCTCTCTTAAGCTTCAACTGGTTCATACTTGGCACACTTACCTACCCAACACTGCCGAGGGTTGCCCATATTGTGGCCCCAGTGGCATCAAATCTTGTGGACCGGGCATTAAGCTGGCTTGGTTTCTCTTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

36.73

Weight (kDa)

6.22

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45310 AT5G45310
fragaria_vesca	FvH4_5g24810 FvH4_5g24810
malus_domestica	MD06G1011900.v1.1 MD16G1286500.v1.1
prunus_persica	Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1 Prupe.5G014600_v2.0.a1
pyrus_communis	pycom06g01000 pycom16g25740 pycom16g25750
rosa_chinensis	RchiOBHm_Chr7g0215151
rosa_laevigata	RLG00000002688
rosa_multiflora	Rmu_sc0006273.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244560
rosa_rugosa	Rorug07G0150500 Rorug07G0150600
rosa_samantha	Rh7AG287400 Rh7BG279200 Rh7CG307100 Rh7DG290700
rosa_wichuraiana	Rw7G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	829
AccB7I	CCANNNNNTGG	1 cut(s)	910
AclWI	GGATC	3 cut(s)	324, 436, 449
AcsI	RAATTY	2 cut(s)	43, 99
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	4 cut(s)	117, 649, 748, 910
AflII	CTTAAG	1 cut(s)	844
AgsI	TTSAA	5 cut(s)	260, 293, 353, 567, 853
AjnI	CCWGG	2 cut(s)	91, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	8 cut(s)	33, 163, 193, 256, 363, 722, 849, 951
AluI	AGCT	8 cut(s)	33, 163, 193, 256, 363, 722, 849, 951
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	3 cut(s)	324, 436, 449
AlwNI	CAGNNNCTG	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	108, 578, 912
ApoI	RAATTY	2 cut(s)	43, 99
Asp700I	GAANNNNTTC	3 cut(s)	47, 333, 562
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	4 cut(s)	490, 578, 913, 937
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	2 cut(s)	28, 641
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	490, 937
BamHI	GGATCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	3 cut(s)	229, 454, 461
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	672, 706
BciT130I	CCWGG	2 cut(s)	93, 488
BcnI	CCSGG	1 cut(s)	941
BfaI	CTAG	1 cut(s)	973
BfmI	CTRYAG	1 cut(s)	762
BfrI	CTTAAG	1 cut(s)	844
BfuAI	ACCTGC	1 cut(s)	829
BglI	GCCNNNNNGGC	1 cut(s)	920
BglII	AGATCT	1 cut(s)	549
Bme1390I	CCNGG	3 cut(s)	93, 488, 941
Bme18I	GGWCC	2 cut(s)	490, 937
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	4 cut(s)	490, 578, 913, 937
BmiI	GGNNCC	2 cut(s)	443, 915
BmrFI	CCNGG	3 cut(s)	93, 488, 941
BmrI	ACTGGG	1 cut(s)	911
BmsI	GCATC	4 cut(s)	154, 499, 820, 932
BmuI	ACTGGG	1 cut(s)	911
BpiI	GAAGAC	1 cut(s)	732
BpmI	CTGGAG	2 cut(s)	73, 470
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	941
BsaJI	CCNNGG	2 cut(s)	6, 893
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 649, 748, 910
Bse1I	ACTGG	3 cut(s)	459, 860, 917
Bse3DI	GCAATG	2 cut(s)	279, 666
BseBI	CCWGG	2 cut(s)	93, 488
BseDI	CCNNGG	2 cut(s)	6, 893
BseGI	GGATG	2 cut(s)	586, 835
BseLI	CCNNNNNNNGG	4 cut(s)	117, 649, 748, 910
BseMI	GCAATG	2 cut(s)	279, 666
BseNI	ACTGG	3 cut(s)	459, 860, 917
BsgI	GTGCAG	2 cut(s)	122, 702
BshFI	GGCC	3 cut(s)	110, 580, 914
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	940
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	4 cut(s)	117, 649, 748, 910
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	3 cut(s)	110, 580, 914
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	316, 441, 549
BspANI	GGCC	3 cut(s)	110, 580, 914
BspLI	GGNNCC	2 cut(s)	443, 915
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	3 cut(s)	324, 436, 449
BspTI	CTTAAG	1 cut(s)	844
BsrDI	GCAATG	2 cut(s)	279, 666
BsrI	ACTGG	3 cut(s)	459, 860, 917
BssECI	CCNNGG	2 cut(s)	6, 893
BssMI	GATC	3 cut(s)	316, 441, 549
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	93, 488
Bst4CI	ACNGT	2 cut(s)	763, 808
Bst6I	CTCTTC	2 cut(s)	93, 761
BstAFI	CTTAAG	1 cut(s)	844
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	720, 737, 953
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	586, 835
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	3 cut(s)	319, 444, 552
BstMBI	GATC	3 cut(s)	316, 441, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 160, 830, 920
BstNI	CCWGG	2 cut(s)	93, 488
BstNSI	RCATGY	2 cut(s)	739, 775
BstSCI	CCNGG	3 cut(s)	91, 486, 939
BstSFI	CTRYAG	1 cut(s)	762
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	3 cut(s)	316, 441, 549
BstYI	RGATCY	3 cut(s)	316, 441, 549
BsuRI	GGCC	3 cut(s)	110, 580, 914
BtsCI	GGATG	2 cut(s)	586, 835
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	3 cut(s)	759, 887, 924
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	3 cut(s)	720, 737, 953
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	4 cut(s)	490, 578, 913, 937
Csp6I	GTAC	1 cut(s)	571
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviAII	CATG	6 cut(s)	38, 177, 269, 450, 736, 772
CviQI	GTAC	1 cut(s)	571
DpnI	GATC	3 cut(s)	318, 443, 551
DpnII	GATC	3 cut(s)	316, 441, 549
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	93, 761
EarI	CTCTTC	2 cut(s)	93, 761
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	490, 937
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	91, 486
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	6 cut(s)	41, 180, 272, 453, 739, 775
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	6 cut(s)	37, 176, 268, 449, 735, 771
FauNDI	CATATG	2 cut(s)	65, 150
FokI	GGATG	2 cut(s)	573, 842
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	973
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	1 cut(s)	503
GsuI	CTGGAG	2 cut(s)	73, 470
HaeIII	GGCC	3 cut(s)	110, 580, 914
HapII	CCGG	1 cut(s)	940
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	6 cut(s)	41, 180, 272, 453, 739, 775
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	4 cut(s)	57, 169, 563, 670
HpaII	CCGG	1 cut(s)	940
HphI	GGTGA	2 cut(s)	28, 641
Hpy166II	GTNNAC	2 cut(s)	530, 937
Hpy188I	TCNGA	2 cut(s)	321, 829
Hpy188III	TCNNGA	3 cut(s)	52, 166, 383
Hpy8I	GTNNAC	2 cut(s)	530, 937
HpyAV	CCTTC	3 cut(s)	13, 503, 642
HpyCH4III	ACNGT	2 cut(s)	763, 808
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	7 cut(s)	139, 145, 154, 547, 659, 683, 735
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 160, 830, 920
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	6 cut(s)	41, 180, 272, 453, 739, 775
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	316, 441, 549
LweI	GCATC	4 cut(s)	154, 499, 820, 932
MaeI	CTAG	1 cut(s)	973
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	3 cut(s)	318, 443, 551
MboI	GATC	3 cut(s)	316, 441, 549
MboII	GAAGA	7 cut(s)	80, 272, 275, 326, 533, 737, 748
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	3 cut(s)	316, 441, 549
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	6 cut(s)	43, 72, 99, 216, 288, 615
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	3 cut(s)	190, 494, 888
MroXI	GAANNNNTTC	3 cut(s)	47, 333, 562
MseI	TTAA	6 cut(s)	219, 375, 639, 779, 845, 947
MspCI	CTTAAG	1 cut(s)	844
MspI	CCGG	1 cut(s)	940
MspR9I	CCNGG	3 cut(s)	93, 488, 941
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	93, 488
MwoI	GCNNNNNNNGC	4 cut(s)	151, 160, 830, 920
NciI	CCSGG	1 cut(s)	941
NdeI	CATATG	2 cut(s)	65, 150
NdeII	GATC	3 cut(s)	316, 441, 549
NlaIII	CATG	6 cut(s)	41, 180, 272, 453, 739, 775
NlaIV	GGNNCC	2 cut(s)	443, 915
NmeAIII	GCCGAG	1 cut(s)	918
NsbI	TGCGCA	1 cut(s)	503
NspI	RCATGY	2 cut(s)	739, 775
PaeI	GCATGC	1 cut(s)	739
PaeR7I	CTCGAG	1 cut(s)	164
PctI	GAATGC	1 cut(s)	429
PdmI	GAANNNNTTC	3 cut(s)	47, 333, 562
PfeI	GAWTC	3 cut(s)	57, 169, 563
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	910
PfoI	TCCNGGA	2 cut(s)	91, 486
PleI	GAGTC	1 cut(s)	678
PpsI	GAGTC	1 cut(s)	678
PpuMI	RGGWCCY	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	91, 486
PspGI	CCWGG	2 cut(s)	91, 486
PspN4I	GGNNCC	2 cut(s)	443, 915
PspPI	GGNCC	4 cut(s)	490, 578, 913, 937
PspPPI	RGGWCCY	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	3 cut(s)	316, 441, 549
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	6 cut(s)	219, 375, 639, 779, 845, 947
Sau3AI	GATC	3 cut(s)	316, 441, 549
Sau96I	GGNCC	4 cut(s)	490, 578, 913, 937
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	3 cut(s)	93, 488, 941
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	4 cut(s)	154, 499, 820, 932
SfcI	CTRYAG	1 cut(s)	762
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	490, 937
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	3 cut(s)	164, 194, 844
SmoI	CTYRAG	3 cut(s)	164, 194, 844
SphI	GCATGC	1 cut(s)	739
Sse9I	AATT	6 cut(s)	43, 72, 99, 216, 288, 615
SspMI	CTAG	1 cut(s)	973
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	91, 486, 939
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	763, 808
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	3 cut(s)	159, 165, 382
TasI	AATT	6 cut(s)	43, 72, 99, 216, 288, 615
TfiI	GAWTC	3 cut(s)	57, 169, 563
Tru1I	TTAA	6 cut(s)	219, 375, 639, 779, 845, 947
Tru9I	TTAA	6 cut(s)	219, 375, 639, 779, 845, 947
TscAI	CASTG	3 cut(s)	766, 894, 924
TspDTI	ATGAA	4 cut(s)	402, 575, 677, 850
TspRI	CASTG	3 cut(s)	766, 894, 924
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	910
Vha464I	CTTAAG	1 cut(s)	844
VpaK11BI	GGWCC	2 cut(s)	490, 937
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	43, 99
XceI	RCATGY	2 cut(s)	739, 775
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	3 cut(s)	47, 333, 562
XspI	CTAG	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.