AT5G45360

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010917
Physical Location & Seq
Reverse (-)
18384489 .. 18386871
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45360.1

Sequence Viewer

Length: 951 bp
ATGTCTGTTTCCGATGAGGAAGATGAGTGTTTCGCTCGATTCCTCGAATCAGAAGTCTCATCGGTAGAGGATAAAGAAGAAACGAAAGAACCTGAGGCAAAACGGCAACGTATTGAGAAAGGCGAAACAAAGGCTCTAGAGAAGGATGAAGATCAAAAGGAAAATGGTAACAAAGATAAAACTGATGCAAAGAGAATAGAGAGTGGAGTTTTCACCAATGTTCCTACTGAGCTGTTTCGTCATATTCTCAAGTTCTTATCTTCGGAGGATCTTGTATCATGCTCCTTGGTTTGTAAATTTCTCAATTTTGCTGCGGCTGATGAATCCTTATGGCGTCGCCTGTACTGTATCCGGTGGGGTCTAACTCTTCCAAGTAGAAAGTTACGTGAATCTGCTTGGAAGAAGCTTTATATTGATCGTGATGAACAGGACATGATTGAACTTGTCAGAACCTGTCCGTCGGATTTCAAGGAGTATTACGTACATATGCAAGCAGCAAAGAGAAGCCAAGCACCTCTTCCGTCCCAGATGGTGGATGACCGGATAATTCTTGACAATACTGTACTTGAACAAGTTTCTCTATGGAAGAAAAGCAAAGGACTTACTGATAAGGCTGTCACTGGCCATATTTGTTTGGGAACCAAATGTTCATACCATCAGATTGACGACGTGTTCATATGCAAAGAGACGGGAAATGTTCATGTATGCGATGATAACTGCAAGGAAGTAATACTGAGTCCAGAGGGTGACCTCATGGTGTGTACTATCTCAGGAGTTTGTTCTGATACTTTACTTGTACAAACTGAGCCAGACGCAGATGGGTGTTATGAGGAAGAAGCTGAACTAGAAGCTGAAGTATTCACAGATAAAAGCCGATTAGCCCGAGCTTTTGAACTTGGCTACAACTGCGATGATGAGCAGGAACTGGAACGTACCCTGAGGTTCTGCTGA

Protein Analysis

316

Amino Acids

36.24

Weight (kDa)

4.72

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 72 - 112 4e-08 F-box domain
F-box-like PF12937 73 - 116 1.8e-13 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45360
fragaria_vesca FvH4_2g37370 FvH4_2g37370
malus_domestica MD15G1000900.v1.1
prunus_persica Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis pycom15g00030
rosa_chinensis RchiOBHm_Chr6g0304341
rosa_laevigata RLG00000010988
rosa_multiflora Rmu_ssc0000218.1_g000040
rosa_roxburghii Rroxscaffold_7G00163820
rosa_rugosa Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana Rw6G038500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 532
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 873
AcyI GRCGYC 1 cut(s) 334
AfaI GTAC 6 cut(s) 344, 483, 564, 763, 798, 934
AfiI CCNNNNNNNGG 1 cut(s) 532
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 4 cut(s) 440, 469, 569, 893
AjiI CACGTC 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 5 cut(s) 232, 406, 839, 851, 887
AluI AGCT 5 cut(s) 232, 406, 839, 851, 887
Alw26I GTCTC 2 cut(s) 61, 680
AlwI GGATC 1 cut(s) 276
AlwNI CAGNNNCTG 2 cut(s) 453, 925
Ama87I CYCGRG 1 cut(s) 882
AoxI GGCC 1 cut(s) 622
ApeKI GCWGC 2 cut(s) 311, 494
ApoI RAATTY 1 cut(s) 296
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AsuHPI GGTGA 2 cut(s) 205, 758
AvaI CYCGRG 1 cut(s) 882
AxyI CCTNAGG 2 cut(s) 93, 938
BalI TGGCCA 1 cut(s) 624
BbvI GCAGC 2 cut(s) 298, 506
BccI CCATC 3 cut(s) 523, 663, 812
BceAI ACGGC 1 cut(s) 119
BciVI GTATCC 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 61, 680
BfaI CTAG 2 cut(s) 137, 845
BfuI GTATCC 1 cut(s) 359
BisI GCNGC 3 cut(s) 312, 315, 495
BlsI GCNGC 3 cut(s) 313, 316, 496
BmeT110I CYCGRG 1 cut(s) 882
BmgBI CACGTC 1 cut(s) 670
BmiI GGNNCC 1 cut(s) 640
BmsI GCATC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 233
BsaAI YACGTR 2 cut(s) 386, 481
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 2 cut(s) 351, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 2 cut(s) 625, 930
Bse21I CCTNAGG 2 cut(s) 93, 938
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 151, 541
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMII CTCAG 6 cut(s) 84, 219, 725, 783, 795, 929
BseNI ACTGG 2 cut(s) 625, 930
BseXI GCAGC 2 cut(s) 298, 506
BshFI GGCC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 2 cut(s) 352, 541
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 2 cut(s) 61, 680
BsmBI CGTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 1 cut(s) 624
BsoBI CYCGRG 1 cut(s) 882
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 3 cut(s) 151, 268, 415
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 624
BspCNI CTCAG 6 cut(s) 85, 220, 726, 782, 796, 930
BspLI GGNNCC 1 cut(s) 640
BspPI GGATC 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 2 cut(s) 625, 930
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 151, 268, 415
BssNI GRCGYC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 347, 562
Bst6I CTCTTC 2 cut(s) 372, 522
BstACI GRCGYC 1 cut(s) 334
BstAUI TGTACA 1 cut(s) 796
BstBAI YACGTR 2 cut(s) 386, 481
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 6 cut(s) 93, 228, 734, 769, 804, 938
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 2 cut(s) 151, 541
BstKTI GATC 3 cut(s) 154, 271, 418
BstMAI GTCTC 2 cut(s) 61, 680
BstMBI GATC 3 cut(s) 151, 268, 415
BstMWI GCNNNNNNNGC 1 cut(s) 906
BstPI GGTNACC 1 cut(s) 746
BstSNI TACGTA 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 298, 506
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 2 cut(s) 93, 938
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 1 cut(s) 624
BtgZI GCGATG 2 cut(s) 723, 924
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 2 cut(s) 151, 541
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 2 cut(s) 453, 925
CseI GACGC 2 cut(s) 323, 821
Csp6I GTAC 6 cut(s) 343, 482, 563, 762, 797, 933
CviAII CATG 4 cut(s) 279, 433, 701, 754
CviQI GTAC 6 cut(s) 343, 482, 563, 762, 797, 933
DdeI CTNAG 6 cut(s) 93, 228, 734, 769, 804, 938
DpnI GATC 3 cut(s) 153, 270, 417
DpnII GATC 3 cut(s) 151, 268, 415
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 2 cut(s) 372, 522
EarI CTCTTC 2 cut(s) 372, 522
Eco105I TACGTA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 873
Eco81I CCTNAGG 2 cut(s) 93, 938
Eco88I CYCGRG 1 cut(s) 882
Eco91I GGTNACC 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 746
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 4 cut(s) 282, 436, 704, 757
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 508
FatI CATG 4 cut(s) 278, 432, 700, 753
FauNDI CATATG 2 cut(s) 486, 677
Fnu4HI GCNGC 3 cut(s) 312, 315, 495
FokI GGATG 2 cut(s) 158, 548
Fsp4HI GCNGC 3 cut(s) 312, 315, 495
FspBI CTAG 2 cut(s) 137, 845
GluI GCNGC 3 cut(s) 312, 315, 495
HaeIII GGCC 1 cut(s) 624
HapII CCGG 2 cut(s) 352, 541
HgaI GACGC 2 cut(s) 323, 821
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 4 cut(s) 282, 436, 704, 757
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 5 cut(s) 39, 47, 323, 389, 736
HpaII CCGG 2 cut(s) 352, 541
HphI GGTGA 2 cut(s) 205, 758
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 7 cut(s) 13, 52, 265, 449, 463, 660, 784
Hpy188III TCNNGA 5 cut(s) 137, 419, 551, 740, 771
Hpy8I GTNNAC 1 cut(s) 762
Hpy99I CGWCG 3 cut(s) 339, 463, 671
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 347, 562
HpyCH4IV ACGT 5 cut(s) 109, 385, 480, 669, 931
HpyCH4V TGCA 4 cut(s) 188, 490, 681, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 906
HpyF3I CTNAG 6 cut(s) 93, 228, 734, 769, 804, 938
HpySE526I ACGT 5 cut(s) 109, 385, 480, 669, 931
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 4 cut(s) 282, 436, 704, 757
Kzo9I GATC 3 cut(s) 151, 268, 415
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 2 cut(s) 298, 506
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 137, 845
MaeII ACGT 5 cut(s) 109, 385, 480, 669, 931
MaeIII GTNAC 4 cut(s) 167, 381, 616, 746
MalI GATC 3 cut(s) 153, 270, 417
MboI GATC 3 cut(s) 151, 268, 415
MboII GAAGA 9 cut(s) 32, 89, 161, 252, 359, 412, 509, 598, 845
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 3 cut(s) 296, 304, 546
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 1 cut(s) 441
Mox20I TGGCCA 1 cut(s) 624
MscI TGGCCA 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 624
MspI CCGG 2 cut(s) 352, 541
MwoI GCNNNNNNNGC 1 cut(s) 906
NdeI CATATG 2 cut(s) 486, 677
NdeII GATC 3 cut(s) 151, 268, 415
NlaIII CATG 4 cut(s) 282, 436, 704, 757
NlaIV GGNNCC 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 616, 746
PfeI GAWTC 4 cut(s) 39, 47, 323, 389
PflMI CCANNNNNTGG 1 cut(s) 532
PkrI GCNGC 3 cut(s) 313, 316, 496
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
Ppu21I YACGTR 2 cut(s) 386, 481
PspEI GGTNACC 1 cut(s) 746
PspN4I GGNNCC 1 cut(s) 640
PstNI CAGNNNCTG 2 cut(s) 453, 925
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 6 cut(s) 344, 483, 564, 763, 798, 934
RsaNI GTAC 6 cut(s) 343, 482, 563, 762, 797, 933
SatI GCNGC 3 cut(s) 312, 315, 495
Sau3AI GATC 3 cut(s) 151, 268, 415
SchI GAGTC 1 cut(s) 745
SfaNI GCATC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SnaBI TACGTA 1 cut(s) 481
Sse9I AATT 3 cut(s) 296, 304, 546
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 137, 845
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 347, 562
TaiI ACGT 5 cut(s) 112, 388, 483, 672, 934
TaqI TCGA 2 cut(s) 37, 45
TasI AATT 3 cut(s) 296, 304, 546
TatI WGTACW 4 cut(s) 342, 562, 761, 796
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 4 cut(s) 39, 47, 323, 389
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 2 cut(s) 616, 746
TseI GCWGC 2 cut(s) 311, 494
Tsp45I GTSAC 2 cut(s) 616, 746
TspDTI ATGAA 6 cut(s) 162, 336, 438, 639, 664, 689
TspGWI ACGGA 2 cut(s) 447, 510
TspRI CASTG 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 532
XapI RAATTY 1 cut(s) 296
XbaI TCTAGA 1 cut(s) 136
XspI CTAG 2 cut(s) 137, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.