Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Reverse (-)

67009252 .. 67012844

Gene Structure 3593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG458800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACGATATCAGAGGACGAGGACGAGAGTTTGGCTCAATTCCTTGAAACGGAGGTGCTCTCCGAGGTCTCCGATCAGGAGGAGGAGGAAGATTTGATGATAAAGGAGCCCAACCCTAAGAGAATGCATATGACCGAGGATAAGGCAGAGAATGAGAAAAGCAAAGAAGAAGATAAAGCAAGCTGCTCTTCATCTTCTTCGACCGCCATTGTCAGTAACAACCAGCTCATGAGAATTGACACTGGGATTTTGAGCAAAATCCCACCCGAGCTGTTCCGTCACATCCTCAAGTTCCTATCTTCTGAGGATCTCATTGCTTGTTCACTCGTCTGTAGATTTCTGAATCATGCAGCTTCTGATGAATCCTTGTGGCAACGCTTGTATCGTATGCGATGGGGTCTTTTGCCCCCTACCAGAAAGCTACGCGAATGTCCTTGGAAAAAGCTTTACATTGAGCGTGATGAAGAGGACATGGTGGATCTTGGTAGAAATTGCCCGGTTGAGTTCAAGGAGTACTATGTCCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGCGAAAGATGATGGGTTAATTCTTGACAAGACAGTAGCTGATCAAGTGTCCATCTGGAAAAGAAGTAAAGGCCTGACTGATAAGGTGGTAACTGATCATACTTGTTCCGGTGAAAAGTGTACTTACTACCAAGTTGGAGATGTGTTTGTTTGCGAGAAGACTGGGCAGGTTCATGTATGTGATGAGTTTTGCAGAGAAGCTGTTATGGATCCCGCTAATATGCTTTGGGTCTGTAGAATATCTGGTCATTGCTTTGATAATGTACTGTCACCACAAGAAGTGGAGTCAGATGCAGTGAGTGGAAATCTGCTCTACCTTGCAATTTTAATTGTCATACTGAAAGTCTTCATAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

307

Amino Acids

35.09

Weight (kDa)

4.88

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	84 - 125	4.6e-09	F-box domain
F-box-like	PF12937	85 - 129	1.1e-13	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	724
AccII	CGCG	1 cut(s)	426
AciI	CCGC	2 cut(s)	204, 780
AclWI	GGATC	4 cut(s)	315, 486, 770, 783
AfaI	GTAC	3 cut(s)	515, 688, 831
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	47, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	9 cut(s)	183, 226, 271, 353, 421, 445, 533, 605, 767
AluI	AGCT	9 cut(s)	183, 226, 271, 353, 421, 445, 533, 605, 767
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	4 cut(s)	315, 486, 770, 783
AlwNI	CAGNNNCTG	2 cut(s)	356, 605
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	183, 350, 533
Asp700I	GAANNNNTTC	1 cut(s)	911
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	689, 828
AvaI	CYCGRG	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BamHI	GGATCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	731, 904
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	170, 362, 520
BccI	CCATC	3 cut(s)	387, 572, 626
BclI	TGATCA	2 cut(s)	607, 661
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	2 cut(s)	331, 799
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	3 cut(s)	184, 351, 534
BlsI	GCNGC	3 cut(s)	185, 352, 535
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	108, 777
BmrFI	CCNGG	1 cut(s)	497
BmrI	ACTGGG	2 cut(s)	252, 738
BmsI	GCATC	1 cut(s)	847
BmuI	ACTGGG	2 cut(s)	252, 738
BpiI	GAAGAC	2 cut(s)	731, 904
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 44, 76
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	63, 135, 434
BsaWI	WCCGGW	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	247, 733
Bse3DI	GCAATG	2 cut(s)	312, 814
BseDI	CCNNGG	3 cut(s)	63, 135, 434
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	312, 814
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	247, 733
BseRI	GAGGAG	2 cut(s)	95, 98
BseXI	GCAGC	3 cut(s)	170, 362, 520
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	639
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	497, 675
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	639
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	60, 111
Bsp143I	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
BspACI	CCGC	2 cut(s)	204, 780
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	108, 777
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	4 cut(s)	315, 486, 770, 783
BspQI	GCTCTTC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	312, 814
BsrI	ACTGG	2 cut(s)	247, 733
BssECI	CCNNGG	3 cut(s)	63, 135, 434
BssMI	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	2 cut(s)	601, 834
Bst6I	CTCTTC	3 cut(s)	193, 459, 561
BstC8I	GCNNGC	2 cut(s)	181, 531
BstDEI	CTNAG	2 cut(s)	117, 303
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	6 cut(s)	76, 310, 481, 610, 664, 778
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
BstMCI	CGRYCG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	2 cut(s)	331, 799
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	170, 362, 520
BstV2I	GAAGAC	2 cut(s)	731, 904
BstX2I	RGATCY	3 cut(s)	307, 478, 775
BstYI	RGATCY	3 cut(s)	307, 478, 775
BsuRI	GGCC	1 cut(s)	639
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	2 cut(s)	240, 867
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	2 cut(s)	181, 531
CaiI	CAGNNNCTG	2 cut(s)	356, 605
CciI	TCATGA	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	514, 687, 830
CviAII	CATG	4 cut(s)	229, 347, 472, 740
CviQI	GTAC	3 cut(s)	514, 687, 830
DdeI	CTNAG	2 cut(s)	117, 303
DpnI	GATC	6 cut(s)	75, 309, 480, 609, 663, 777
DpnII	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
Eam1104I	CTCTTC	3 cut(s)	193, 459, 561
EarI	CTCTTC	3 cut(s)	193, 459, 561
Eco130I	CCWWGG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	232, 350, 475, 743
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 540, 572
FatI	CATG	4 cut(s)	228, 346, 471, 739
FauI	CCCGC	1 cut(s)	787
FauNDI	CATATG	1 cut(s)	129
FbaI	TGATCA	2 cut(s)	607, 661
Fnu4HI	GCNGC	3 cut(s)	184, 351, 534
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	184, 351, 534
GluI	GCNGC	3 cut(s)	184, 351, 534
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	497, 675
Hin1II	CATG	4 cut(s)	232, 350, 475, 743
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	343, 362, 851
HpaII	CCGG	2 cut(s)	497, 675
HphI	GGTGA	2 cut(s)	689, 828
Hpy166II	GTNNAC	2 cut(s)	323, 687
Hpy188I	TCNGA	7 cut(s)	13, 64, 73, 304, 342, 358, 856
Hpy188III	TCNNGA	4 cut(s)	77, 229, 590, 622
Hpy8I	GTNNAC	2 cut(s)	323, 687
HpyAV	CCTTC	1 cut(s)	570
HpyCH4III	ACNGT	2 cut(s)	601, 834
HpyCH4V	TGCA	6 cut(s)	127, 350, 529, 759, 860, 887
HpyF3I	CTNAG	2 cut(s)	117, 303
Hsp92II	CATG	4 cut(s)	232, 350, 475, 743
Ksp22I	TGATCA	2 cut(s)	607, 661
Kzo9I	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	3 cut(s)	170, 362, 520
LweI	GCATC	1 cut(s)	847
MaeIII	GTNAC	4 cut(s)	215, 278, 655, 834
MalI	GATC	6 cut(s)	75, 309, 480, 609, 663, 777
MboI	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
MflI	RGATCY	3 cut(s)	307, 478, 775
MhlI	GDGCHC	2 cut(s)	60, 111
MluCI	AATT	6 cut(s)	38, 234, 490, 585, 888, 894
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	1 cut(s)	682
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	2 cut(s)	584, 893
MslI	CAYNNNNRTG	1 cut(s)	744
MspI	CCGG	2 cut(s)	497, 675
MspR9I	CCNGG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	129
MvnI	CGCG	1 cut(s)	426
NciI	CCSGG	1 cut(s)	497
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
NlaIII	CATG	4 cut(s)	232, 350, 475, 743
NlaIV	GGNNCC	2 cut(s)	108, 777
NmuCI	GTSAC	2 cut(s)	278, 834
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	2 cut(s)	343, 362
PkrI	GCNGC	3 cut(s)	185, 352, 535
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
PspN4I	GGNNCC	2 cut(s)	108, 777
PstNI	CAGNNNCTG	2 cut(s)	356, 605
PsuI	RGATCY	3 cut(s)	307, 478, 775
RsaI	GTAC	3 cut(s)	515, 688, 831
RsaNI	GTAC	3 cut(s)	514, 687, 830
RseI	CAYNNNNRTG	1 cut(s)	744
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	584, 893
SatI	GCNGC	3 cut(s)	184, 351, 534
Sau3AI	GATC	6 cut(s)	73, 307, 478, 607, 661, 775
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	1 cut(s)	860
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	60, 111
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	2 cut(s)	331, 799
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	6 cut(s)	38, 234, 490, 585, 888, 894
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	2 cut(s)	204, 780
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	601, 834
TaqI	TCGA	1 cut(s)	200
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	6 cut(s)	38, 234, 490, 585, 888, 894
TatI	WGTACW	3 cut(s)	513, 686, 829
TfiI	GAWTC	2 cut(s)	343, 362
Tru1I	TTAA	2 cut(s)	584, 893
Tru9I	TTAA	2 cut(s)	584, 893
TscAI	CASTG	2 cut(s)	247, 867
TseFI	GTSAC	2 cut(s)	278, 834
TseI	GCWGC	3 cut(s)	183, 350, 533
Tsp45I	GTSAC	2 cut(s)	278, 834
TspDTI	ATGAA	5 cut(s)	180, 375, 477, 728, 904
TspGWI	ACGGA	2 cut(s)	65, 266
TspRI	CASTG	2 cut(s)	247, 867
XmnI	GAANNNNTTC	1 cut(s)	911
ZrmI	AGTACT	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.