Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Forward (+)

61835612 .. 61839025

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATAAAGGAGCCCAACCCTAAGAGAATGCATATGACCGAGGATAAGGCAGAGAATCAGAAAAGCAAAGAAGAAGATAAAGCAAGCTGCTCTTCATCTTCTTCGACCGCCATTGTCAGTAACAACCAGCTCATGAGAATTGACACTGGGATTTTGAGCAAAATCCCACCCGAGCTGTTCCGTCACATCCTCAAGTTCCTATCTTCTGAGGATCTCATTGCTTGTTCACTCGTCTGTAGATTTCTGAATCATGCAGCTTCTGATGAATCCTTGTGGCAACGCTTGTATCGTATGCGATGGGGTCTTTTGCCCCCTACCAGAAAGCTACGCGAATGTCCTTGGAAAAAGCTTTACATTGAGCGTGATGAAGAGGACATGGTGGATCTTGGTAGAAATTGCCCGGTTGAGTTCAAGGAGTACTATGTCCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGCGAAAGATGATGGGTTAATTCTTGACAAGACAGTAGCTGATCAAGTGTCCATCTGGAAAAGAAGTAAAGGCCTGACTGATAAGGTGGTAACAGATCATACTTGTTCCGGTGAAAAGTGTACTTACTACCAAGTTGGAGATGTGTTTGTTTGCGAGAAGACTGGGCAGGTTCATGGTAGGAGATACTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

221

Amino Acids

25.45

Weight (kDa)

8.55

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	52 - 93	2.8e-09	F-box domain
F-box-like	PF12937	53 - 97	6.3e-14	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccII	CGCG	1 cut(s)	330
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	219, 390
AfaI	GTAC	2 cut(s)	419, 592
AgsI	TTSAA	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	8 cut(s)	87, 130, 175, 257, 325, 349, 437, 509
AluI	AGCT	8 cut(s)	87, 130, 175, 257, 325, 349, 437, 509
AlwI	GGATC	2 cut(s)	219, 390
AlwNI	CAGNNNCTG	2 cut(s)	260, 509
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	87, 254, 437
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	3 cut(s)	74, 266, 424
BccI	CCATC	3 cut(s)	291, 476, 530
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	3 cut(s)	88, 255, 438
BlsI	GCNGC	3 cut(s)	89, 256, 439
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	2 cut(s)	156, 642
BmuI	ACTGGG	2 cut(s)	156, 642
BpiI	GAAGAC	1 cut(s)	635
BplI	GAGNNNNNCTC	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	39, 338
BsaWI	WCCGGW	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	151, 637
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	39, 338
BseGI	GGATG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	151, 637
BseXI	GCAGC	3 cut(s)	74, 266, 424
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	401, 579
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	543
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	211, 382, 511, 565
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	2 cut(s)	219, 390
BspQI	GCTCTTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	151, 637
BssECI	CCNNGG	2 cut(s)	39, 338
BssMI	GATC	4 cut(s)	211, 382, 511, 565
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	3 cut(s)	97, 363, 465
BstC8I	GCNNGC	2 cut(s)	85, 435
BstDEI	CTNAG	2 cut(s)	21, 207
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	4 cut(s)	214, 385, 514, 568
BstMBI	GATC	4 cut(s)	211, 382, 511, 565
BstMCI	CGRYCG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	235
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	74, 266, 424
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	2 cut(s)	211, 382
BstYI	RGATCY	2 cut(s)	211, 382
BsuRI	GGCC	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	85, 435
CaiI	CAGNNNCTG	2 cut(s)	260, 509
CciI	TCATGA	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	418, 591
CviAII	CATG	4 cut(s)	133, 251, 376, 644
CviQI	GTAC	2 cut(s)	418, 591
DdeI	CTNAG	2 cut(s)	21, 207
DpnI	GATC	4 cut(s)	213, 384, 513, 567
DpnII	GATC	4 cut(s)	211, 382, 511, 565
Eam1104I	CTCTTC	3 cut(s)	97, 363, 465
EarI	CTCTTC	3 cut(s)	97, 363, 465
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	4 cut(s)	136, 254, 379, 647
FaiI	YATR	9 cut(s)	33, 35, 134, 252, 293, 377, 423, 570, 645
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 444, 476
FatI	CATG	4 cut(s)	132, 250, 375, 643
FauNDI	CATATG	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	88, 255, 438
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	88, 255, 438
GluI	GCNGC	3 cut(s)	88, 255, 438
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	2 cut(s)	401, 579
Hin1II	CATG	4 cut(s)	136, 254, 379, 647
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	55, 247, 266
HpaII	CCGG	2 cut(s)	401, 579
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	2 cut(s)	227, 591
Hpy188I	TCNGA	4 cut(s)	60, 208, 246, 262
Hpy188III	TCNNGA	3 cut(s)	133, 494, 526
Hpy8I	GTNNAC	2 cut(s)	227, 591
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	31, 254, 433
HpyF3I	CTNAG	2 cut(s)	21, 207
Hsp92II	CATG	4 cut(s)	136, 254, 379, 647
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	211, 382, 511, 565
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	74, 266, 424
MaeIII	GTNAC	3 cut(s)	119, 182, 559
MalI	GATC	4 cut(s)	213, 384, 513, 567
MboI	GATC	4 cut(s)	211, 382, 511, 565
MboII	GAAGA	9 cut(s)	83, 84, 86, 90, 93, 195, 380, 452, 640
MflI	RGATCY	2 cut(s)	211, 382
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	138, 394, 489
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	5 cut(s)	34, 200, 202, 364, 468
Mph1103I	ATGCAT	1 cut(s)	33
MseI	TTAA	1 cut(s)	488
MspI	CCGG	2 cut(s)	401, 579
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	33
MvnI	CGCG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	401
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	4 cut(s)	211, 382, 511, 565
NlaIII	CATG	4 cut(s)	136, 254, 379, 647
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	33
PagI	TCATGA	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	55, 247, 266
PkrI	GCNGC	3 cut(s)	89, 256, 439
PspN4I	GGNNCC	1 cut(s)	12
PstNI	CAGNNNCTG	2 cut(s)	260, 509
PsuI	RGATCY	2 cut(s)	211, 382
RsaI	GTAC	2 cut(s)	419, 592
RsaNI	GTAC	2 cut(s)	418, 591
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	3 cut(s)	88, 255, 438
Sau3AI	GATC	4 cut(s)	211, 382, 511, 565
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	138, 394, 489
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	104
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	138, 394, 489
TatI	WGTACW	2 cut(s)	417, 590
TfiI	GAWTC	3 cut(s)	55, 247, 266
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	87, 254, 437
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	84, 279, 381, 632
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.