Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Forward (+)

32882080 .. 32885751

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G353600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGACTATATCAGAGGATGAGGACGAGATTTTGGCTCATTTCCTTGAATCGGAGGTGCTCTCCGAGGTTTCAGACCAGGAGGAGGAGGATAAAATGAAAAATGAGTCCAAAGCAAAGAGAATGCGAGTAGTAGAGGATAAGACTGAGGAAGACCCTAAATTTCACAAAAACCCAGAAGACAGAGGAGCCTCGTCCTCATCTTCTTCAAGGATTGAGACTGGCATTTTCGGCAAAATCCCTCCTGAACTCTTCCCTCACATCCTCAAGTTCCTCTCTTCTGAGGATCTTATTGCTTGTTCTCTCGTCTGTAGATTTCTAAATTATGCTGCATCGGATGAATCCTTATGGCGCCGCTTGTATTGTATGCGATGGGGTCTTTTACCTCCTACTAGAAAGTTACGTGAATGTCCTTGGAAAAAACTTTATATTCAGCGTGATGAGGAGGACATGGTGGAACTTGTTAGGAATTGCTCACTTGAGTTCAAGGAATACTATATACAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGTGAATGACGATGGGATAATTCTTGACAGGACAGTAGCTGATCAAGTGTCTATGTGGAAAAGTAGTAAAGGCCTGACTGATAAGGTTGTAGCTGATCATGCTTGTTCTGGTGAAATCTGTACTTACTACCAAATTGGAGATGTATTTGTTTGTGAGAAGACTGGGCAGGTTCATGTATGTGATGATAACTGCAGAGAAGTTGTTATGGATCCAACCAATGAGCTTTGGGTCTGTACAATATCTGGGCACTGTTTTGATAGGCTACTATCACCAGCAGAAATGGAGCCAGATTCTGAACTGCAACAAGGGGGTGTGACAGATGAGGCAGAACCATTCATGGGATCTGGTCGCTTTGCAAGAGCCTATCAGTTGGGATACAATTGTGCTGATGAAAAAGAGCTAGAGGATGCTTTGAGGTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

323

Amino Acids

36.84

Weight (kDa)

4.68

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	348
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	4 cut(s)	291, 746, 759, 892
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	2 cut(s)	664, 778
AfiI	CCNNNNNNNGG	3 cut(s)	49, 82, 881
AgsI	TTSAA	3 cut(s)	47, 207, 484
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	5 cut(s)	509, 581, 635, 766, 943
AluI	AGCT	5 cut(s)	509, 581, 635, 766, 943
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	4 cut(s)	291, 746, 759, 892
AlwNI	CAGNNNCTG	2 cut(s)	581, 836
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	2 cut(s)	326, 509
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	351
AsuHPI	GGTGA	3 cut(s)	556, 665, 804
BaeGI	GKGCMC	1 cut(s)	792
BaeI	ACNNNNGTAYC	2 cut(s)	910, 943
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	3 cut(s)	156, 183, 707
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	313, 496
BccI	CCATC	2 cut(s)	363, 548
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	911
BclI	TGATCA	2 cut(s)	583, 637
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	390, 944
BfmI	CTRYAG	2 cut(s)	307, 733
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	911
BisI	GCNGC	3 cut(s)	327, 352, 510
BlsI	GCNGC	3 cut(s)	328, 353, 511
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	4 cut(s)	187, 350, 753, 828
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	2 cut(s)	338, 940
BmuI	ACTGGG	1 cut(s)	714
BpiI	GAAGAC	3 cut(s)	156, 183, 707
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpuEI	CTTGAG	2 cut(s)	248, 497
BsaAI	YACGTR	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	63, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 82, 881
Bse1I	ACTGG	2 cut(s)	223, 709
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	63, 410
BseGI	GGATG	4 cut(s)	22, 258, 340, 955
BseLI	CCNNNNNNNGG	3 cut(s)	49, 82, 881
BseMII	CTCAG	2 cut(s)	135, 270
BseNI	ACTGG	2 cut(s)	223, 709
BseRI	GAGGAG	4 cut(s)	95, 98, 198, 455
BseSI	GKGCMC	1 cut(s)	792
BseXI	GCAGC	2 cut(s)	313, 496
BshFI	GGCC	1 cut(s)	615
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	49, 82, 881
BsmAI	GTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	60, 792
Bsp1407I	TGTACA	1 cut(s)	776
Bsp143I	GATC	5 cut(s)	283, 583, 637, 751, 884
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	2 cut(s)	136, 271
BspLI	GGNNCC	4 cut(s)	187, 350, 753, 828
BspMAI	CTGCAG	1 cut(s)	737
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	4 cut(s)	291, 746, 759, 892
BspT107I	GGYRCC	1 cut(s)	348
BsrGI	TGTACA	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	223, 709
BssECI	CCNNGG	2 cut(s)	63, 410
BssMI	GATC	5 cut(s)	283, 583, 637, 751, 884
BssNI	GRCGYC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	577, 794
Bst6I	CTCTTC	3 cut(s)	254, 280, 537
BstACI	GRCGYC	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	776
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	144, 279
BstF5I	GGATG	4 cut(s)	22, 258, 340, 955
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	286, 586, 640, 754, 887
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	283, 583, 637, 751, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 641
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	2 cut(s)	307, 733
BstSLI	GKGCMC	1 cut(s)	792
BstV1I	GCAGC	2 cut(s)	313, 496
BstV2I	GAAGAC	3 cut(s)	156, 183, 707
BstX2I	RGATCY	3 cut(s)	283, 751, 884
BstYI	RGATCY	3 cut(s)	283, 751, 884
BsuI	GTATCC	1 cut(s)	911
BsuRI	GGCC	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	4 cut(s)	22, 258, 340, 955
BtsIMutI	CAGTG	1 cut(s)	790
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	2 cut(s)	581, 836
CfoI	GCGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	663, 777
CviAII	CATG	4 cut(s)	448, 641, 716, 880
CviQI	GTAC	2 cut(s)	663, 777
DdeI	CTNAG	2 cut(s)	144, 279
DinI	GGCGCC	1 cut(s)	350
DpnI	GATC	5 cut(s)	285, 585, 639, 753, 886
DpnII	GATC	5 cut(s)	283, 583, 637, 751, 884
Eam1104I	CTCTTC	3 cut(s)	254, 280, 537
EarI	CTCTTC	3 cut(s)	254, 280, 537
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	410
EgeI	GGCGCC	1 cut(s)	350
EheI	GGCGCC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	4 cut(s)	451, 644, 719, 883
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	4 cut(s)	447, 640, 715, 879
FbaI	TGATCA	2 cut(s)	583, 637
Fnu4HI	GCNGC	3 cut(s)	327, 352, 510
FokI	GGATG	4 cut(s)	29, 245, 347, 962
Fsp4HI	GCNGC	3 cut(s)	327, 352, 510
FspBI	CTAG	2 cut(s)	390, 944
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	3 cut(s)	327, 352, 510
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	451, 644, 719, 883
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	47, 104, 338, 833
HphI	GGTGA	3 cut(s)	556, 665, 804
Hpy188I	TCNGA	7 cut(s)	13, 52, 64, 73, 280, 334, 838
Hpy188III	TCNNGA	2 cut(s)	242, 566
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	2 cut(s)	577, 794
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	5 cut(s)	329, 505, 735, 844, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 641
HpyF3I	CTNAG	2 cut(s)	144, 279
HpySE526I	ACGT	1 cut(s)	400
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	4 cut(s)	451, 644, 719, 883
HspAI	GCGC	1 cut(s)	349
KasI	GGCGCC	1 cut(s)	348
Ksp22I	TGATCA	2 cut(s)	583, 637
Kzo9I	GATC	5 cut(s)	283, 583, 637, 751, 884
LmnI	GCTCC	2 cut(s)	185, 826
Lsp1109I	GCAGC	2 cut(s)	313, 496
LweI	GCATC	2 cut(s)	338, 940
MaeI	CTAG	2 cut(s)	390, 944
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	396, 856
MalI	GATC	5 cut(s)	285, 585, 639, 753, 886
MboI	GATC	5 cut(s)	283, 583, 637, 751, 884
MboII	GAAGA	8 cut(s)	161, 188, 192, 195, 241, 267, 524, 712
MfeI	CAATTG	1 cut(s)	922
MflI	RGATCY	3 cut(s)	283, 751, 884
MhlI	GDGCHC	2 cut(s)	60, 792
MluCI	AATT	6 cut(s)	158, 319, 466, 561, 675, 922
Mly113I	GGCGCC	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	779
MslI	CAYNNNNRTG	1 cut(s)	720
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	922
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	228, 641
NarI	GGCGCC	1 cut(s)	349
NdeII	GATC	5 cut(s)	283, 583, 637, 751, 884
NlaIII	CATG	4 cut(s)	451, 644, 719, 883
NlaIV	GGNNCC	4 cut(s)	187, 350, 753, 828
NmuCI	GTSAC	1 cut(s)	856
PceI	AGGCCT	1 cut(s)	615
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	47, 338, 833
PkrI	GCNGC	3 cut(s)	328, 353, 511
PleI	GAGTC	1 cut(s)	112
PluTI	GGCGCC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	187, 350, 753, 828
PstI	CTGCAG	1 cut(s)	737
PstNI	CAGNNNCTG	2 cut(s)	581, 836
PsuI	RGATCY	3 cut(s)	283, 751, 884
RsaI	GTAC	2 cut(s)	664, 778
RsaNI	GTAC	2 cut(s)	663, 777
RseI	CAYNNNNRTG	1 cut(s)	720
SatI	GCNGC	3 cut(s)	327, 352, 510
Sau3AI	GATC	5 cut(s)	283, 583, 637, 751, 884
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	60, 792
SfaNI	GCATC	2 cut(s)	338, 940
SfcI	CTRYAG	2 cut(s)	307, 733
SfoI	GGCGCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	2 cut(s)	263, 476
SmoI	CTYRAG	2 cut(s)	263, 476
Sse9I	AATT	6 cut(s)	158, 319, 466, 561, 675, 922
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	1 cut(s)	352
SspDI	GGCGCC	1 cut(s)	348
SspMI	CTAG	2 cut(s)	390, 944
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	577, 794
TaiI	ACGT	1 cut(s)	403
TasI	AATT	6 cut(s)	158, 319, 466, 561, 675, 922
TatI	WGTACW	2 cut(s)	662, 776
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	47, 338, 833
TscAI	CASTG	1 cut(s)	797
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	2 cut(s)	326, 509
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	5 cut(s)	110, 351, 704, 868, 948
TspRI	CASTG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	2 cut(s)	390, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.